LAMMPS (21 Feb 2017) using 1 OpenMP thread(s) per MPI task processors * * 1 units metal boundary p p f read_data adatom.data orthogonal box = (0 0 0) to (17.1214 14.8276 39.3197) 2 by 2 by 1 MPI processor grid reading atoms ... 181 atoms pair_style agni pair_coeff * * Al_jpc.agni Al Reading potential file Al_jpc.agni with DATE: 2017-02-24 neighbor 0.3 bin neigh_modify delay 2 check yes timestep 0.0005 velocity all create 500 12345 fix 1 all nvt temp 250 250 0.2 fix 5 all momentum 1 linear 1 1 1 thermo 100 thermo_style custom step ke temp # dump MyDump all custom 250 dump.atoms id type x y z vx vy vz fx fy fz run 1000 Neighbor list info ... update every 1 steps, delay 2 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.3 ghost atom cutoff = 8.3 binsize = 4.15, bins = 5 4 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair agni, perpetual attributes: full, newton on pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Memory usage per processor = 3.06041 Mbytes Step KinEng Temp 0 11.633413 500 100 4.6059941 197.96401 200 7.3700154 316.76067 300 6.0443913 259.78581 400 6.1631193 264.8887 500 6.2647281 269.25581 600 5.2732537 226.64259 700 5.651448 242.89725 800 6.5572405 281.82789 900 6.0576741 260.3567 1000 6.562224 282.04208 Loop time of 14.5263 on 4 procs for 1000 steps with 181 atoms Performance: 2.974 ns/day, 8.070 hours/ns, 68.841 timesteps/s 99.3% CPU use with 4 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 12.858 | 13.227 | 13.574 | 8.0 | 91.06 Neigh | 0.0056965 | 0.0058173 | 0.0060787 | 0.2 | 0.04 Comm | 0.92934 | 1.276 | 1.6455 | 25.7 | 8.78 Output | 0.00013971 | 0.00017625 | 0.00025463 | 0.0 | 0.00 Modify | 0.012693 | 0.012756 | 0.012911 | 0.1 | 0.09 Other | | 0.004066 | | | 0.03 Nlocal: 45.25 ave 52 max 40 min Histogram: 1 0 0 1 1 0 0 0 0 1 Nghost: 376.5 ave 382 max 366 min Histogram: 1 0 0 0 0 0 0 0 2 1 Neighs: 0 ave 0 max 0 min Histogram: 4 0 0 0 0 0 0 0 0 0 FullNghs: 4871 ave 5578 max 4374 min Histogram: 1 0 1 1 0 0 0 0 0 1 Total # of neighbors = 19484 Ave neighs/atom = 107.646 Neighbor list builds = 33 Dangerous builds = 0 Please see the log.cite file for references relevant to this simulation Total wall time: 0:00:14