/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://lammps.sandia.gov/, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "compute_bond.h" #include "bond.h" #include "bond_hybrid.h" #include "error.h" #include "force.h" #include "update.h" using namespace LAMMPS_NS; /* ---------------------------------------------------------------------- */ ComputeBond::ComputeBond(LAMMPS *lmp, int narg, char **arg) : Compute(lmp, narg, arg), emine(nullptr) { if (narg != 3) error->all(FLERR,"Illegal compute bond command"); vector_flag = 1; extvector = 1; peflag = 1; timeflag = 1; // check if bond style hybrid exists bond = (BondHybrid *) force->bond_match("hybrid"); if (!bond) error->all(FLERR,"Bond style for compute bond command is not hybrid"); size_vector = nsub = bond->nstyles; emine = new double[nsub]; vector = new double[nsub]; } /* ---------------------------------------------------------------------- */ ComputeBond::~ComputeBond() { delete [] emine; delete [] vector; } /* ---------------------------------------------------------------------- */ void ComputeBond::init() { // recheck bond style in case it has been changed bond = (BondHybrid *) force->bond_match("hybrid"); if (!bond) error->all(FLERR,"Bond style for compute bond command is not hybrid"); if (bond->nstyles != nsub) error->all(FLERR,"Bond style for compute bond command has changed"); } /* ---------------------------------------------------------------------- */ void ComputeBond::compute_vector() { invoked_vector = update->ntimestep; if (update->eflag_global != invoked_vector) error->all(FLERR,"Energy was not tallied on needed timestep"); for (int i = 0; i < nsub; i++) emine[i] = bond->styles[i]->energy; MPI_Allreduce(emine,vector,nsub,MPI_DOUBLE,MPI_SUM,world); }