/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "string.h" #include "stdlib.h" #include "fix_setforce.h" #include "atom.h" #include "update.h" #include "modify.h" #include "domain.h" #include "region.h" #include "respa.h" #include "input.h" #include "variable.h" #include "memory.h" #include "error.h" using namespace LAMMPS_NS; enum{NONE,CONSTANT,EQUAL,ATOM}; /* ---------------------------------------------------------------------- */ FixSetForce::FixSetForce(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg) { if (narg < 6) error->all("Illegal fix setforce command"); vector_flag = 1; size_vector = 3; global_freq = 1; extvector = 1; xstr = ystr = zstr = NULL; if (strstr(arg[3],"v_") == arg[3]) { int n = strlen(&arg[3][2]) + 1; xstr = new char[n]; strcpy(xstr,&arg[3][2]); } else if (strcmp(arg[3],"NULL") == 0) { xstyle = NONE; } else { xvalue = atof(arg[3]); xstyle = CONSTANT; } if (strstr(arg[4],"v_") == arg[4]) { int n = strlen(&arg[4][2]) + 1; ystr = new char[n]; strcpy(ystr,&arg[4][2]); } else if (strcmp(arg[4],"NULL") == 0) { ystyle = NONE; } else { yvalue = atof(arg[4]); ystyle = CONSTANT; } if (strstr(arg[5],"v_") == arg[5]) { int n = strlen(&arg[5][2]) + 1; zstr = new char[n]; strcpy(zstr,&arg[5][2]); } else if (strcmp(arg[5],"NULL") == 0) { zstyle = NONE; } else { zvalue = atof(arg[5]); zstyle = CONSTANT; } // optional args iregion = -1; idregion = NULL; int iarg = 6; while (iarg < narg) { if (strcmp(arg[iarg],"region") == 0) { if (iarg+2 > narg) error->all("Illegal fix setforce command"); iregion = domain->find_region(arg[iarg+1]); if (iregion == -1) error->all("Region ID for fix setforce does not exist"); int n = strlen(arg[iarg+1]) + 1; idregion = new char[n]; strcpy(idregion,arg[iarg+1]); iarg += 2; } else error->all("Illegal fix setforce command"); } force_flag = 0; foriginal[0] = foriginal[1] = foriginal[2] = 0.0; maxatom = 0; sforce = NULL; } /* ---------------------------------------------------------------------- */ FixSetForce::~FixSetForce() { delete [] xstr; delete [] ystr; delete [] zstr; delete [] idregion; memory->destroy(sforce); } /* ---------------------------------------------------------------------- */ int FixSetForce::setmask() { int mask = 0; mask |= POST_FORCE; mask |= POST_FORCE_RESPA; mask |= MIN_POST_FORCE; return mask; } /* ---------------------------------------------------------------------- */ void FixSetForce::init() { // check variables if (xstr) { xvar = input->variable->find(xstr); if (xvar < 0) error->all("Variable name for fix setforce does not exist"); if (input->variable->equalstyle(xvar)) xstyle = EQUAL; else if (input->variable->atomstyle(xvar)) xstyle = ATOM; else error->all("Variable for fix setforce is invalid style"); } if (ystr) { yvar = input->variable->find(ystr); if (yvar < 0) error->all("Variable name for fix setforce does not exist"); if (input->variable->equalstyle(yvar)) ystyle = EQUAL; else if (input->variable->atomstyle(yvar)) ystyle = ATOM; else error->all("Variable for fix setforce is invalid style"); } if (zstr) { zvar = input->variable->find(zstr); if (zvar < 0) error->all("Variable name for fix setforce does not exist"); if (input->variable->equalstyle(zvar)) zstyle = EQUAL; else if (input->variable->atomstyle(zvar)) zstyle = ATOM; else error->all("Variable for fix setforce is invalid style"); } // set index and check validity of region if (iregion >= 0) { iregion = domain->find_region(idregion); if (iregion == -1) error->all("Region ID for fix setforce does not exist"); } if (xstyle == ATOM || ystyle == ATOM || zstyle == ATOM) varflag = ATOM; else if (xstyle == EQUAL || ystyle == EQUAL || zstyle == EQUAL) varflag = EQUAL; else varflag = CONSTANT; if (strstr(update->integrate_style,"respa")) nlevels_respa = ((Respa *) update->integrate)->nlevels; // cannot use non-zero forces for a minimization since no energy is integrated // use fix addforce instead int flag = 0; if (update->whichflag == 2) { if (xstyle == EQUAL || xstyle == ATOM) flag = 1; if (ystyle == EQUAL || ystyle == ATOM) flag = 1; if (zstyle == EQUAL || zstyle == ATOM) flag = 1; if (xstyle == CONSTANT && xvalue != 0.0) flag = 1; if (ystyle == CONSTANT && yvalue != 0.0) flag = 1; if (zstyle == CONSTANT && zvalue != 0.0) flag = 1; } if (flag) error->all("Cannot use non-zero forces in an energy minimization"); } /* ---------------------------------------------------------------------- */ void FixSetForce::setup(int vflag) { if (strstr(update->integrate_style,"verlet")) post_force(vflag); else for (int ilevel = 0; ilevel < nlevels_respa; ilevel++) { ((Respa *) update->integrate)->copy_flevel_f(ilevel); post_force_respa(vflag,ilevel,0); ((Respa *) update->integrate)->copy_f_flevel(ilevel); } } /* ---------------------------------------------------------------------- */ void FixSetForce::min_setup(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixSetForce::post_force(int vflag) { double **x = atom->x; double **f = atom->f; int *mask = atom->mask; int nlocal = atom->nlocal; // reallocate sforce array if necessary if (varflag == ATOM && nlocal > maxatom) { maxatom = atom->nmax; memory->destroy(sforce); memory->create(sforce,maxatom,3,"setforce:sforce"); } foriginal[0] = foriginal[1] = foriginal[2] = 0.0; force_flag = 0; if (varflag == CONSTANT) { for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (iregion >= 0 && !domain->regions[iregion]->match(x[i][0],x[i][1],x[i][2])) continue; foriginal[0] += f[i][0]; foriginal[1] += f[i][1]; foriginal[2] += f[i][2]; if (xstyle) f[i][0] = xvalue; if (ystyle) f[i][1] = yvalue; if (zstyle) f[i][2] = zvalue; } // variable force, wrap with clear/add } else { modify->clearstep_compute(); if (xstyle == EQUAL) xvalue = input->variable->compute_equal(xvar); else if (xstyle == ATOM && sforce) input->variable->compute_atom(xvar,igroup,&sforce[0][0],3,0); if (ystyle == EQUAL) yvalue = input->variable->compute_equal(yvar); else if (ystyle == ATOM && sforce) input->variable->compute_atom(yvar,igroup,&sforce[0][1],3,0); if (zstyle == EQUAL) zvalue = input->variable->compute_equal(zvar); else if (zstyle == ATOM && sforce) input->variable->compute_atom(zvar,igroup,&sforce[0][2],3,0); modify->addstep_compute(update->ntimestep + 1); for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (iregion >= 0 && !domain->regions[iregion]->match(x[i][0],x[i][1],x[i][2])) continue; foriginal[0] += f[i][0]; foriginal[1] += f[i][1]; foriginal[2] += f[i][2]; if (xstyle == ATOM) f[i][0] = sforce[i][0]; else if (xstyle) f[i][0] = xvalue; if (ystyle == ATOM) f[i][1] = sforce[i][1]; else if (ystyle) f[i][1] = yvalue; if (zstyle == ATOM) f[i][2] = sforce[i][2]; else if (zstyle) f[i][2] = zvalue; } } } /* ---------------------------------------------------------------------- */ void FixSetForce::post_force_respa(int vflag, int ilevel, int iloop) { // set force to desired value on outermost level, 0.0 on other levels if (ilevel == nlevels_respa-1) post_force(vflag); else { double **f = atom->f; int *mask = atom->mask; int nlocal = atom->nlocal; for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (xstyle) f[i][0] = 0.0; if (ystyle) f[i][1] = 0.0; if (zstyle) f[i][2] = 0.0; } } } /* ---------------------------------------------------------------------- */ void FixSetForce::min_post_force(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- return components of total force on fix group before force was changed ------------------------------------------------------------------------- */ double FixSetForce::compute_vector(int n) { // only sum across procs one time if (force_flag == 0) { MPI_Allreduce(foriginal,foriginal_all,3,MPI_DOUBLE,MPI_SUM,world); force_flag = 1; } return foriginal_all[n]; } /* ---------------------------------------------------------------------- memory usage of local atom-based array ------------------------------------------------------------------------- */ double FixSetForce::memory_usage() { double bytes = 0.0; if (varflag == ATOM) bytes = atom->nmax*3 * sizeof(double); return bytes; }