/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "math.h" #include "stdlib.h" #include "string.h" #include "fix_wall.h" #include "atom.h" #include "input.h" #include "variable.h" #include "domain.h" #include "lattice.h" #include "update.h" #include "modify.h" #include "respa.h" #include "error.h" using namespace LAMMPS_NS; enum{XLO,XHI,YLO,YHI,ZLO,ZHI}; enum{NONE,EDGE,CONSTANT,VARIABLE}; /* ---------------------------------------------------------------------- */ FixWall::FixWall(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg) { scalar_flag = 1; vector_flag = 1; global_freq = 1; extscalar = 1; extvector = 1; // parse args nwall = 0; int scaleflag = 1; int iarg = 3; while (iarg < narg) { if ((strcmp(arg[iarg],"xlo") == 0) || (strcmp(arg[iarg],"xhi") == 0) || (strcmp(arg[iarg],"ylo") == 0) || (strcmp(arg[iarg],"yhi") == 0) || (strcmp(arg[iarg],"zlo") == 0) || (strcmp(arg[iarg],"zhi") == 0)) { if (iarg+5 > narg) error->all("Illegal fix wall command"); int newwall; if (strcmp(arg[iarg],"xlo") == 0) newwall = XLO; else if (strcmp(arg[iarg],"xhi") == 0) newwall = XHI; else if (strcmp(arg[iarg],"ylo") == 0) newwall = YLO; else if (strcmp(arg[iarg],"yhi") == 0) newwall = YHI; else if (strcmp(arg[iarg],"zlo") == 0) newwall = ZLO; else if (strcmp(arg[iarg],"zhi") == 0) newwall = ZHI; for (int m = 0; m < nwall; m++) if (newwall == wallwhich[m]) error->all("Wall defined twice in fix wall command"); wallwhich[nwall] = newwall; if (strcmp(arg[iarg+1],"EDGE") == 0) { wallstyle[nwall] = EDGE; int dim = wallwhich[nwall] / 2; int side = wallwhich[nwall] % 2; if (side == 0) coord0[nwall] = domain->boxlo[dim]; else coord0[nwall] = domain->boxhi[dim]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { wallstyle[nwall] = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; varstr[nwall] = new char[n]; strcpy(varstr[nwall],&arg[iarg+1][2]); } else { wallstyle[nwall] = CONSTANT; coord0[nwall] = atof(arg[iarg+1]); } epsilon[nwall] = atof(arg[iarg+2]); sigma[nwall] = atof(arg[iarg+3]); cutoff[nwall] = atof(arg[iarg+4]); nwall++; iarg += 5; } else if (strcmp(arg[iarg],"units") == 0) { if (iarg+2 > narg) error->all("Illegal fix wall command"); if (strcmp(arg[iarg+1],"box") == 0) scaleflag = 0; else if (strcmp(arg[iarg+1],"lattice") == 0) scaleflag = 1; else error->all("Illegal fix wall command"); iarg += 2; } else error->all("Illegal fix wall command"); } size_vector = nwall; // error check if (nwall == 0) error->all("Illegal fix wall command"); for (int m = 0; m < nwall; m++) if (cutoff[m] <= 0.0) error->all("Fix wall cutoff <= 0.0"); for (int m = 0; m < nwall; m++) { if ((wallwhich[m] == XLO || wallwhich[m] == XHI) && domain->xperiodic) error->all("Cannot use fix wall in periodic dimension"); if ((wallwhich[m] == YLO || wallwhich[m] == YHI) && domain->yperiodic) error->all("Cannot use fix wall in periodic dimension"); if ((wallwhich[m] == ZLO || wallwhich[m] == ZHI) && domain->zperiodic) error->all("Cannot use fix wall in periodic dimension"); } for (int m = 0; m < nwall; m++) if ((wallwhich[m] == ZLO || wallwhich[m] == ZHI) && domain->dimension == 2) error->all("Cannot use fix wall zlo/zhi for a 2d simulation"); // scale coord for CONSTANT walls int flag = 0; for (int m = 0; m < nwall; m++) if (wallstyle[m] == CONSTANT) flag = 1; if (flag) { if (scaleflag && domain->lattice == NULL) error->all("Use of fix wall with undefined lattice"); double xscale,yscale,zscale; if (scaleflag) { xscale = domain->lattice->xlattice; yscale = domain->lattice->ylattice; zscale = domain->lattice->zlattice; } else xscale = yscale = zscale = 1.0; double scale; for (int m = 0; m < nwall; m++) { if (wallwhich[m] < YLO) scale = xscale; else if (wallwhich[m] < ZLO) scale = yscale; else scale = zscale; if (wallstyle[m] == CONSTANT) coord0[m] *= scale; } } // set time_depend and varflag if any wall positions are variable varflag = 0; for (int m = 0; m < nwall; m++) if (wallstyle[m] == VARIABLE) time_depend = varflag = 1; eflag = 0; for (int m = 0; m <= nwall; m++) ewall[m] = 0.0; } /* ---------------------------------------------------------------------- */ FixWall::~FixWall() { for (int m = 0; m < nwall; m++) if (wallstyle[m] == VARIABLE) delete [] varstr[m]; } /* ---------------------------------------------------------------------- */ int FixWall::setmask() { int mask = 0; mask |= POST_FORCE; mask |= THERMO_ENERGY; mask |= POST_FORCE_RESPA; mask |= MIN_POST_FORCE; return mask; } /* ---------------------------------------------------------------------- */ void FixWall::init() { dt = update->dt; for (int m = 0; m < nwall; m++) { if (wallstyle[m] != VARIABLE) continue; varindex[m] = input->variable->find(varstr[m]); if (varindex[m] < 0) error->all("Variable name for fix wall does not exist"); if (!input->variable->equalstyle(varindex[m])) error->all("Variable for fix wall is invalid style"); } // setup coefficients for (int m = 0; m < nwall; m++) precompute(m); if (strstr(update->integrate_style,"respa")) nlevels_respa = ((Respa *) update->integrate)->nlevels; } /* ---------------------------------------------------------------------- */ void FixWall::setup(int vflag) { if (strstr(update->integrate_style,"verlet")) post_force(vflag); else { ((Respa *) update->integrate)->copy_flevel_f(nlevels_respa-1); post_force_respa(vflag,nlevels_respa-1,0); ((Respa *) update->integrate)->copy_f_flevel(nlevels_respa-1); } } /* ---------------------------------------------------------------------- */ void FixWall::min_setup(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixWall::post_force(int vflag) { eflag = 0; for (int m = 0; m <= nwall; m++) ewall[m] = 0.0; // coord = current position of wall // evaluate variable if necessary, wrap with clear/add if (varflag) modify->clearstep_compute(); double coord; for (int m = 0; m < nwall; m++) { if (wallstyle[m] == VARIABLE) coord = input->variable->compute_equal(varindex[m]); else coord = coord0[m]; wall_particle(m,wallwhich[m],coord); } if (varflag) modify->addstep_compute(update->ntimestep + 1); } /* ---------------------------------------------------------------------- */ void FixWall::post_force_respa(int vflag, int ilevel, int iloop) { if (ilevel == nlevels_respa-1) post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixWall::min_post_force(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- energy of wall interaction ------------------------------------------------------------------------- */ double FixWall::compute_scalar() { // only sum across procs one time if (eflag == 0) { MPI_Allreduce(ewall,ewall_all,nwall+1,MPI_DOUBLE,MPI_SUM,world); eflag = 1; } return ewall_all[0]; } /* ---------------------------------------------------------------------- components of force on wall ------------------------------------------------------------------------- */ double FixWall::compute_vector(int n) { // only sum across procs one time if (eflag == 0) { MPI_Allreduce(ewall,ewall_all,nwall+1,MPI_DOUBLE,MPI_SUM,world); eflag = 1; } return ewall_all[n+1]; }