/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "mpi.h" #include "string.h" #include "stdlib.h" #include "fix_aveforce.h" #include "atom.h" #include "update.h" #include "modify.h" #include "domain.h" #include "region.h" #include "respa.h" #include "input.h" #include "variable.h" #include "error.h" using namespace LAMMPS_NS; enum{NONE,CONSTANT,EQUAL}; /* ---------------------------------------------------------------------- */ FixAveForce::FixAveForce(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg) { if (narg < 6) error->all("Illegal fix aveforce command"); vector_flag = 1; size_vector = 3; global_freq = 1; extvector = 1; xstr = ystr = zstr = NULL; if (strstr(arg[3],"v_") == arg[3]) { int n = strlen(&arg[3][2]) + 1; xstr = new char[n]; strcpy(xstr,&arg[3][2]); } else if (strcmp(arg[3],"NULL") == 0) { xstyle = NONE; } else { xvalue = atof(arg[3]); xstyle = CONSTANT; } if (strstr(arg[4],"v_") == arg[4]) { int n = strlen(&arg[4][2]) + 1; ystr = new char[n]; strcpy(ystr,&arg[4][2]); } else if (strcmp(arg[4],"NULL") == 0) { ystyle = NONE; } else { yvalue = atof(arg[4]); ystyle = CONSTANT; } if (strstr(arg[5],"v_") == arg[5]) { int n = strlen(&arg[5][2]) + 1; zstr = new char[n]; strcpy(zstr,&arg[5][2]); } else if (strcmp(arg[5],"NULL") == 0) { zstyle = NONE; } else { zvalue = atof(arg[5]); zstyle = CONSTANT; } // optional args iregion = -1; idregion = NULL; int iarg = 6; while (iarg < narg) { if (strcmp(arg[iarg],"region") == 0) { if (iarg+2 > narg) error->all("Illegal fix aveforce command"); iregion = domain->find_region(arg[iarg+1]); if (iregion == -1) error->all("Region ID for fix aveforce does not exist"); int n = strlen(arg[iarg+1]) + 1; idregion = new char[n]; strcpy(idregion,arg[iarg+1]); iarg += 2; } else error->all("Illegal fix aveforce command"); } foriginal_all[0] = foriginal_all[1] = foriginal_all[2] = foriginal_all[3] = 0.0; } /* ---------------------------------------------------------------------- */ FixAveForce::~FixAveForce() { delete [] xstr; delete [] ystr; delete [] zstr; delete [] idregion; } /* ---------------------------------------------------------------------- */ int FixAveForce::setmask() { int mask = 0; mask |= POST_FORCE; mask |= POST_FORCE_RESPA; mask |= MIN_POST_FORCE; return mask; } /* ---------------------------------------------------------------------- */ void FixAveForce::init() { // check variables if (xstr) { xvar = input->variable->find(xstr); if (xvar < 0) error->all("Variable name for fix aveforce does not exist"); if (input->variable->equalstyle(xvar)) xstyle = EQUAL; else error->all("Variable for fix aveforce is invalid style"); } if (ystr) { yvar = input->variable->find(ystr); if (yvar < 0) error->all("Variable name for fix aveforce does not exist"); if (input->variable->equalstyle(yvar)) ystyle = EQUAL; else error->all("Variable for fix aveforce is invalid style"); } if (zstr) { zvar = input->variable->find(zstr); if (zvar < 0) error->all("Variable name for fix aveforce does not exist"); if (input->variable->equalstyle(zvar)) zstyle = EQUAL; else error->all("Variable for fix aveforce is invalid style"); } // set index and check validity of region if (iregion >= 0) { iregion = domain->find_region(idregion); if (iregion == -1) error->all("Region ID for fix aveforce does not exist"); } if (xstyle == EQUAL || ystyle == EQUAL || zstyle == EQUAL) varflag = EQUAL; else varflag = CONSTANT; if (strcmp(update->integrate_style,"respa") == 0) nlevels_respa = ((Respa *) update->integrate)->nlevels; } /* ---------------------------------------------------------------------- */ void FixAveForce::setup(int vflag) { if (strcmp(update->integrate_style,"verlet") == 0) post_force(vflag); else for (int ilevel = 0; ilevel < nlevels_respa; ilevel++) { ((Respa *) update->integrate)->copy_flevel_f(ilevel); post_force_respa(vflag,ilevel,0); ((Respa *) update->integrate)->copy_f_flevel(ilevel); } } /* ---------------------------------------------------------------------- */ void FixAveForce::min_setup(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixAveForce::post_force(int vflag) { // sum forces on participating atoms double **x = atom->x; double **f = atom->f; int *mask = atom->mask; int nlocal = atom->nlocal; double foriginal[4]; foriginal[0] = foriginal[1] = foriginal[2] = foriginal[3] = 0.0; for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (iregion >= 0 && !domain->regions[iregion]->match(x[i][0],x[i][1],x[i][2])) continue; foriginal[0] += f[i][0]; foriginal[1] += f[i][1]; foriginal[2] += f[i][2]; foriginal[3] += 1.0; } // average the force on participating atoms // add in requested amount, computed via variable evaluation if necessary // wrap variable evaluation with clear/add MPI_Allreduce(foriginal,foriginal_all,4,MPI_DOUBLE,MPI_SUM,world); int ncount = static_cast (foriginal_all[3]); if (ncount == 0) return; if (varflag == EQUAL) { modify->clearstep_compute(); if (xstyle == EQUAL) xvalue = input->variable->compute_equal(xvar); if (ystyle == EQUAL) yvalue = input->variable->compute_equal(yvar); if (zstyle == EQUAL) zvalue = input->variable->compute_equal(zvar); modify->addstep_compute(update->ntimestep + 1); } double fave[3]; fave[0] = foriginal_all[0]/ncount + xvalue; fave[1] = foriginal_all[1]/ncount + yvalue; fave[2] = foriginal_all[2]/ncount + zvalue; // set force of all participating atoms to same value // only for active dimensions for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (iregion >= 0 && !domain->regions[iregion]->match(x[i][0],x[i][1],x[i][2])) continue; if (xstyle) f[i][0] = fave[0]; if (ystyle) f[i][1] = fave[1]; if (zstyle) f[i][2] = fave[2]; } } /* ---------------------------------------------------------------------- */ void FixAveForce::post_force_respa(int vflag, int ilevel, int iloop) { // ave + extra force on outermost level // just ave on inner levels if (ilevel == nlevels_respa-1) post_force(vflag); else { double **x = atom->x; double **f = atom->f; int *mask = atom->mask; int nlocal = atom->nlocal; double foriginal[4]; foriginal[0] = foriginal[1] = foriginal[2] = foriginal[3] = 0.0; for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (iregion >= 0 && !domain->regions[iregion]->match(x[i][0],x[i][1],x[i][2])) continue; foriginal[0] += f[i][0]; foriginal[1] += f[i][1]; foriginal[2] += f[i][2]; foriginal[3] += 1.0; } MPI_Allreduce(foriginal,foriginal_all,4,MPI_DOUBLE,MPI_SUM,world); int ncount = static_cast (foriginal_all[3]); if (ncount == 0) return; double fave[3]; fave[0] = foriginal_all[0]/ncount; fave[1] = foriginal_all[1]/ncount; fave[2] = foriginal_all[2]/ncount; for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (iregion >= 0 && !domain->regions[iregion]->match(x[i][0],x[i][1],x[i][2])) continue; if (xstyle) f[i][0] = fave[0]; if (ystyle) f[i][1] = fave[1]; if (zstyle) f[i][2] = fave[2]; } } } /* ---------------------------------------------------------------------- */ void FixAveForce::min_post_force(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- return components of total force on fix group before force was changed ------------------------------------------------------------------------- */ double FixAveForce::compute_vector(int n) { return foriginal_all[n]; }