variable sname index h_molecule log ${sname}.spe.log units real newton on boundary p p p processors 1 * * atom_style wavepacket read_data data.${sname} #neighbor 2.0 nsq pair_style awpmd/cut -1. hartree ermscale 0.99 free flex_press pair_coeff * * timestep 0.001 fix 1 all nve/awpmd comm_modify vel yes compute energies all pair awpmd/cut variable eke equal c_energies[1] variable epauli equal c_energies[2] variable estatics equal c_energies[3] variable errestrain equal c_energies[4] compute peratom all stress/atom NULL compute p all reduce sum c_peratom[1] c_peratom[2] c_peratom[3] variable press equal -(c_p[1]+c_p[2]+c_p[3])/(3*vol) thermo 1 thermo_style custom step etotal pe ke v_eke v_epauli v_estatics v_errestrain temp press v_press run 0