/* -*- c++ -*- ---------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://www.lammps.org/, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #ifndef LMP_VARIABLE_H #define LMP_VARIABLE_H #include "pointers.h" namespace LAMMPS_NS { class Variable : protected Pointers { friend class Info; public: Variable(class LAMMPS *); ~Variable(); void set(int, char **); void set(const std::string &); void set(char *, int, char **); int set_string(const char *, const char *); int next(int, char **); int find(const char *); void set_arrays(int); void python_command(int, char **); int equalstyle(int); int atomstyle(int); int vectorstyle(int); char *pythonstyle(char *, char *); int internalstyle(int); char *retrieve(const char *); double compute_equal(int); double compute_equal(const std::string &); void compute_atom(int, int, double *, int, int); int compute_vector(int, double **); void internal_set(int, double); tagint int_between_brackets(char *&, int); double evaluate_boolean(char *); public: int nvar; // # of defined variables char **names; // name of each variable // must match "varstyles" array in info.cpp enum { INDEX, LOOP, WORLD, UNIVERSE, ULOOP, STRING, GETENV, SCALARFILE, ATOMFILE, FORMAT, EQUAL, ATOM, VECTOR, PYTHON, INTERNAL }; private: int me; int maxvar; // max # of variables following lists can hold int *style; // style of each variable int *num; // # of values for each variable int *which; // next available value for each variable int *pad; // 1 = pad loop/uloop variables with 0s, 0 = no pad class VarReader **reader; // variable that reads from file char ***data; // str value of each variable's values double *dvalue; // single numeric value for internal variables struct VecVar { int n, nmax; bigint currentstep; double *values; }; VecVar *vecs; int *eval_in_progress; // flag if evaluation of variable is in progress int treetype; // ATOM or VECTOR flag for formula evaluation class RanMars *randomequal; // random number generator for equal-style vars class RanMars *randomatom; // random number generator for atom-style vars int precedence[18]; // precedence level of math operators // set length to include up to XOR in enum struct Tree { // parse tree for atom-style or vector-style vars double value; // single scalar double *array; // per-atom or per-type list of doubles int *iarray; // per-atom list of ints bigint *barray; // per-atom list of bigints int type; // operation, see enum{} in variable.cpp int nvector; // length of array for vector-style variable int nstride; // stride between atoms if array is a 2d array int selfalloc; // 1 if array is allocated here, else 0 int ivalue1, ivalue2; // extra values needed for gmask,rmask,grmask int nextra; // # of additional args beyond first 2 Tree *first, *second; // ptrs further down tree for first 2 args Tree **extra; // ptrs further down tree for nextra args Tree() : array(nullptr), iarray(nullptr), barray(nullptr), selfalloc(0), ivalue1(0), ivalue2(0), nextra(0), first(nullptr), second(nullptr), extra(nullptr) { } }; int compute_python(int); void remove(int); void grow(); void copy(int, char **, char **); double evaluate(char *, Tree **, int); double collapse_tree(Tree *); double eval_tree(Tree *, int); int size_tree_vector(Tree *); int compare_tree_vector(int, int); void free_tree(Tree *); int find_matching_paren(char *, int, char *&, int); int math_function(char *, char *, Tree **, Tree **, int &, double *, int &, int); int group_function(char *, char *, Tree **, Tree **, int &, double *, int &, int); int region_function(char *, int); int special_function(char *, char *, Tree **, Tree **, int &, double *, int &, int); void peratom2global(int, char *, double *, int, tagint, Tree **, Tree **, int &, double *, int &); int is_atom_vector(char *); void atom_vector(char *, Tree **, Tree **, int &); int parse_args(char *, char **); char *find_next_comma(char *); void print_var_error(const std::string &, int, const std::string &, int, int global = 1); void print_tree(Tree *, int); }; class VarReader : protected Pointers { public: class FixStore *fixstore; char *id_fix; VarReader(class LAMMPS *, char *, char *, int); ~VarReader(); int read_scalar(char *); int read_peratom(); private: int me, style; FILE *fp; char *buffer; }; } // namespace LAMMPS_NS #endif /* ERROR/WARNING messages: E: Illegal ... command Self-explanatory. Check the input script syntax and compare to the documentation for the command. You can use -echo screen as a command-line option when running LAMMPS to see the offending line. E: World variable count doesn't match # of partitions A world-style variable must specify a number of values equal to the number of processor partitions. E: Universe/uloop variable count < # of partitions A universe or uloop style variable must specify a number of values >= to the number of processor partitions. E: Cannot open temporary file for world counter. Self-explanatory. E: All universe/uloop variables must have same # of values Self-explanatory. E: Cannot redefine variable as a different style An equal-style variable can be re-defined but only if it was originally an equal-style variable. E: File variable could not read value Check the file assigned to the variable. E: Atomfile variable could not read values Check the file assigned to the variable. E: LAMMPS is not built with Python embedded This is done by including the PYTHON package before LAMMPS is built. This is required to use python-style variables. E: Variable name '%s' must have only alphanumeric characters or underscore UNDOCUMENTED E: Invalid variable '%s' in next command UNDOCUMENTED E: All variables in next command must have same style UNDOCUMENTED E: Invalid variable style with next command Variable styles {equal} and {world} cannot be used in a next command. E: Incorrect conversion in format string A format style variable was not using either a %f, a %g, or a %e conversion. E: Next command must list all universe and uloop variables This is to insure they stay in sync. E: Python variable '%s' does not match Python function UNDOCUMENTED E: Divide by 0 in variable formula Self-explanatory. E: Modulo 0 in variable formula Self-explanatory. E: Power by 0 in variable formula Self-explanatory. E: Sqrt of negative value in variable formula Self-explanatory. E: Log of zero/negative value in variable formula Self-explanatory. E: Arcsin of invalid value in variable formula Argument of arcsin() must be between -1 and 1. E: Arccos of invalid value in variable formula Argument of arccos() must be between -1 and 1. E: Invalid math function in variable formula Self-explanatory. E: Variable name between brackets must be alphanumeric or underscore characters Self-explanatory. E: Non digit character between brackets in variable Self-explanatory. E: Mismatched brackets in variable Self-explanatory. E: Empty brackets in variable There is no variable syntax that uses empty brackets. Check the variable doc page. E: Invalid variable name in variable formula Variable name is not recognized. E: Invalid variable evaluation in variable formula A variable used in a formula could not be evaluated. E: Index between variable brackets must be positive Self-explanatory. E: Indexed per-atom vector in variable formula without atom map Accessing a value from an atom vector requires the ability to lookup an atom index, which is provided by an atom map. An atom map does not exist (by default) for non-molecular problems. Using the atom_modify map command will force an atom map to be created. E: Variable atom ID is too large Specified ID is larger than the maximum allowed atom ID. E: Variable uses atom property that isn't allocated Self-explanatory. E: Invalid atom vector in variable formula The atom vector is not recognized. E: Atom vector in equal-style variable formula Atom vectors generate one value per atom which is not allowed in an equal-style variable. E: Too many args in variable function More args are used than any variable function allows. E: Invalid Boolean syntax in if command Self-explanatory. E: Cannot open file variable file %s The specified file cannot be opened. Check that the path and name are correct. E: Cannot use atomfile-style variable unless atom map exists Self-explanatory. See the atom_modify command to create a map. E: Invalid atom ID in variable file Self-explanatory. U: Variable name must be alphanumeric or underscore characters Self-explanatory. U: Invalid variable in next command Self-explanatory. U: All variables in next command must be same style Self-explanatory. U: Variable has circular dependency A circular dependency is when variable "a" in used by variable "b" and variable "b" is also used by variable "a". Circular dependencies with longer chains of dependence are also not allowed. U: Python variable does not match Python function This matching is defined by the python-style variable and the python command. U: Python variable has no function No python command was used to define the function associated with the python-style variable. U: Invalid syntax in variable formula Self-explanatory. U: Variable evaluation before simulation box is defined Cannot evaluate a compute or fix or atom-based value in a variable before the simulation has been setup. U: Invalid compute ID in variable formula The compute is not recognized. U: Compute used in variable between runs is not current Computes cannot be invoked by a variable in between runs. Thus they must have been evaluated on the last timestep of the previous run in order for their value(s) to be accessed. See the doc page for the variable command for more info. U: Variable formula compute vector is accessed out-of-range Self-explanatory. U: Variable formula compute array is accessed out-of-range Self-explanatory. U: Per-atom compute in equal-style variable formula Equal-style variables cannot use per-atom quantities. U: Mismatched compute in variable formula A compute is referenced incorrectly or a compute that produces per-atom values is used in an equal-style variable formula. U: Invalid fix ID in variable formula The fix is not recognized. U: Fix in variable not computed at compatible time Fixes generate their values on specific timesteps. The variable is requesting the values on a non-allowed timestep. U: Variable formula fix vector is accessed out-of-range Self-explanatory. U: Variable formula fix array is accessed out-of-range Self-explanatory. U: Per-atom fix in equal-style variable formula Equal-style variables cannot use per-atom quantities. U: Mismatched fix in variable formula A fix is referenced incorrectly or a fix that produces per-atom values is used in an equal-style variable formula. U: Atom-style variable in equal-style variable formula Atom-style variables generate one value per atom which is not allowed in an equal-style variable. U: Atomfile-style variable in equal-style variable formula Self-explanatory. U: Mismatched variable in variable formula A variable is referenced incorrectly or an atom-style variable that produces per-atom values is used in an equal-style variable formula. U: Invalid math/group/special function in variable formula Self-explanatory. U: Invalid thermo keyword in variable formula The keyword is not recognized. U: Cannot use ramp in variable formula between runs This is because the ramp() function is time dependent. U: Cannot use vdisplace in variable formula between runs This is a function of elapsed time. U: Cannot use swiggle in variable formula between runs This is a function of elapsed time. U: Cannot use cwiggle in variable formula between runs This is a function of elapsed time. U: Group ID in variable formula does not exist Self-explanatory. U: Invalid group function in variable formula Group function is not recognized. U: Region ID in variable formula does not exist Self-explanatory. U: Invalid special function in variable formula Self-explanatory. U: Gmask function in equal-style variable formula Gmask is per-atom operation. U: Rmask function in equal-style variable formula Rmask is per-atom operation. U: Grmask function in equal-style variable formula Grmask is per-atom operation. U: Variable ID in variable formula does not exist Self-explanatory. U: Atomfile variable in equal-style variable formula Self-explanatory. U: Invalid variable style in special function next Only file-style or atomfile-style variables can be used with next(). U: Invalid is_active() function in variable formula Self-explanatory. U: Invalid is_available() function in variable formula Self-explanatory. U: Invalid is_defined() function in variable formula Self-explanatory. */