/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "fix_wall.h" #include #include #include "input.h" #include "variable.h" #include "domain.h" #include "lattice.h" #include "update.h" #include "modify.h" #include "respa.h" #include "error.h" #include "force.h" #include "utils.h" using namespace LAMMPS_NS; using namespace FixConst; enum{XLO=0,XHI=1,YLO=2,YHI=3,ZLO=4,ZHI=5}; enum{NONE=0,EDGE,CONSTANT,VARIABLE}; /* ---------------------------------------------------------------------- */ FixWall::FixWall(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg), nwall(0) { scalar_flag = 1; vector_flag = 1; global_freq = 1; extscalar = 1; extvector = 1; respa_level_support = 1; ilevel_respa = 0; virial_flag = 1; // parse args int scaleflag = 1; fldflag = 0; int pbcflag = 0; for (int i = 0; i < 6; i++) xstr[i] = estr[i] = sstr[i] = NULL; int iarg = 3; while (iarg < narg) { if ((strcmp(arg[iarg],"xlo") == 0) || (strcmp(arg[iarg],"xhi") == 0) || (strcmp(arg[iarg],"ylo") == 0) || (strcmp(arg[iarg],"yhi") == 0) || (strcmp(arg[iarg],"zlo") == 0) || (strcmp(arg[iarg],"zhi") == 0)) { if (iarg+5 > narg) error->all(FLERR,"Illegal fix wall command"); int newwall; if (strcmp(arg[iarg],"xlo") == 0) newwall = XLO; else if (strcmp(arg[iarg],"xhi") == 0) newwall = XHI; else if (strcmp(arg[iarg],"ylo") == 0) newwall = YLO; else if (strcmp(arg[iarg],"yhi") == 0) newwall = YHI; else if (strcmp(arg[iarg],"zlo") == 0) newwall = ZLO; else if (strcmp(arg[iarg],"zhi") == 0) newwall = ZHI; for (int m = 0; (m < nwall) && (m < 6); m++) if (newwall == wallwhich[m]) error->all(FLERR,"Wall defined twice in fix wall command"); wallwhich[nwall] = newwall; if (strcmp(arg[iarg+1],"EDGE") == 0) { xstyle[nwall] = EDGE; int dim = wallwhich[nwall] / 2; int side = wallwhich[nwall] % 2; if (side == 0) coord0[nwall] = domain->boxlo[dim]; else coord0[nwall] = domain->boxhi[dim]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { xstyle[nwall] = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; xstr[nwall] = new char[n]; strcpy(xstr[nwall],&arg[iarg+1][2]); } else { xstyle[nwall] = CONSTANT; coord0[nwall] = force->numeric(FLERR,arg[iarg+1]); } if (strstr(arg[iarg+2],"v_") == arg[iarg+2]) { int n = strlen(&arg[iarg+2][2]) + 1; estr[nwall] = new char[n]; strcpy(estr[nwall],&arg[iarg+2][2]); estyle[nwall] = VARIABLE; } else { epsilon[nwall] = force->numeric(FLERR,arg[iarg+2]); estyle[nwall] = CONSTANT; } if (utils::strmatch(style,"^wall/morse")) { if (strstr(arg[iarg+3],"v_") == arg[iarg+3]) { int n = strlen(&arg[iarg+3][2]) + 1; astr[nwall] = new char[n]; strcpy(astr[nwall],&arg[iarg+3][2]); astyle[nwall] = VARIABLE; } else { alpha[nwall] = force->numeric(FLERR,arg[iarg+3]); astyle[nwall] = CONSTANT; } ++iarg; } if (strstr(arg[iarg+3],"v_") == arg[iarg+3]) { int n = strlen(&arg[iarg+3][2]) + 1; sstr[nwall] = new char[n]; strcpy(sstr[nwall],&arg[iarg+3][2]); sstyle[nwall] = VARIABLE; } else { sigma[nwall] = force->numeric(FLERR,arg[iarg+3]); sstyle[nwall] = CONSTANT; } cutoff[nwall] = force->numeric(FLERR,arg[iarg+4]); nwall++; iarg += 5; } else if (strcmp(arg[iarg],"units") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal fix wall command"); if (strcmp(arg[iarg+1],"box") == 0) scaleflag = 0; else if (strcmp(arg[iarg+1],"lattice") == 0) scaleflag = 1; else error->all(FLERR,"Illegal fix wall command"); iarg += 2; } else if (strcmp(arg[iarg],"fld") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal fix wall command"); if (strcmp(arg[iarg+1],"no") == 0) fldflag = 0; else if (strcmp(arg[iarg+1],"yes") == 0) fldflag = 1; else error->all(FLERR,"Illegal fix wall command"); iarg += 2; } else if (strcmp(arg[iarg],"pbc") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal fix wall command"); if (strcmp(arg[iarg+1],"yes") == 0) pbcflag = 1; else if (strcmp(arg[iarg+1],"no") == 0) pbcflag = 0; else error->all(FLERR,"Illegal fix wall command"); iarg += 2; } else error->all(FLERR,"Illegal fix wall command"); } size_vector = nwall; // error checks if (nwall == 0) error->all(FLERR,"Illegal fix wall command"); for (int m = 0; m < nwall; m++) if (cutoff[m] <= 0.0) error->all(FLERR,"Fix wall cutoff <= 0.0"); for (int m = 0; m < nwall; m++) if ((wallwhich[m] == ZLO || wallwhich[m] == ZHI) && domain->dimension == 2) error->all(FLERR,"Cannot use fix wall zlo/zhi for a 2d simulation"); if (!pbcflag) { for (int m = 0; m < nwall; m++) { if ((wallwhich[m] == XLO || wallwhich[m] == XHI) && domain->xperiodic) error->all(FLERR,"Cannot use fix wall in periodic dimension"); if ((wallwhich[m] == YLO || wallwhich[m] == YHI) && domain->yperiodic) error->all(FLERR,"Cannot use fix wall in periodic dimension"); if ((wallwhich[m] == ZLO || wallwhich[m] == ZHI) && domain->zperiodic) error->all(FLERR,"Cannot use fix wall in periodic dimension"); } } // scale factors for wall position for CONSTANT and VARIABLE walls int flag = 0; for (int m = 0; m < nwall; m++) if (xstyle[m] != EDGE) flag = 1; if (flag) { if (scaleflag) { xscale = domain->lattice->xlattice; yscale = domain->lattice->ylattice; zscale = domain->lattice->zlattice; } else xscale = yscale = zscale = 1.0; for (int m = 0; m < nwall; m++) { if (xstyle[m] != CONSTANT) continue; if (wallwhich[m] < YLO) coord0[m] *= xscale; else if (wallwhich[m] < ZLO) coord0[m] *= yscale; else coord0[m] *= zscale; } } // set xflag if any wall positions are variable // set varflag if any wall positions or parameters are variable // set wstyle to VARIABLE if either epsilon or sigma is a variable varflag = xflag = 0; for (int m = 0; m < nwall; m++) { if (xstyle[m] == VARIABLE) xflag = 1; if (xflag || estyle[m] == VARIABLE || sstyle[m] == VARIABLE) varflag = 1; if (estyle[m] == VARIABLE || sstyle[m] == VARIABLE) wstyle[m] = VARIABLE; else wstyle[m] = CONSTANT; } eflag = 0; for (int m = 0; m <= nwall; m++) ewall[m] = 0.0; } /* ---------------------------------------------------------------------- */ FixWall::~FixWall() { if (copymode) return; for (int m = 0; m < nwall; m++) { delete [] xstr[m]; delete [] estr[m]; delete [] sstr[m]; } } /* ---------------------------------------------------------------------- */ int FixWall::setmask() { int mask = 0; // FLD implicit needs to invoke wall forces before pair style if (fldflag) mask |= PRE_FORCE; else mask |= POST_FORCE; mask |= THERMO_ENERGY; mask |= POST_FORCE_RESPA; mask |= MIN_POST_FORCE; return mask; } /* ---------------------------------------------------------------------- */ void FixWall::init() { for (int m = 0; m < nwall; m++) { if (xstyle[m] == VARIABLE) { xindex[m] = input->variable->find(xstr[m]); if (xindex[m] < 0) error->all(FLERR,"Variable name for fix wall does not exist"); if (!input->variable->equalstyle(xindex[m])) error->all(FLERR,"Variable for fix wall is invalid style"); } if (estyle[m] == VARIABLE) { eindex[m] = input->variable->find(estr[m]); if (eindex[m] < 0) error->all(FLERR,"Variable name for fix wall does not exist"); if (!input->variable->equalstyle(eindex[m])) error->all(FLERR,"Variable for fix wall is invalid style"); } if (sstyle[m] == VARIABLE) { sindex[m] = input->variable->find(sstr[m]); if (sindex[m] < 0) error->all(FLERR,"Variable name for fix wall does not exist"); if (!input->variable->equalstyle(sindex[m])) error->all(FLERR,"Variable for fix wall is invalid style"); } } // setup coefficients for (int m = 0; m < nwall; m++) precompute(m); if (strstr(update->integrate_style,"respa")) { ilevel_respa = ((Respa *) update->integrate)->nlevels-1; if (respa_level >= 0) ilevel_respa = MIN(respa_level,ilevel_respa); } } /* ---------------------------------------------------------------------- */ void FixWall::setup(int vflag) { if (strstr(update->integrate_style,"verlet")) { if (!fldflag) post_force(vflag); } else { ((Respa *) update->integrate)->copy_flevel_f(ilevel_respa); post_force_respa(vflag,ilevel_respa,0); ((Respa *) update->integrate)->copy_f_flevel(ilevel_respa); } } /* ---------------------------------------------------------------------- */ void FixWall::min_setup(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- only called if fldflag set, in place of post_force ------------------------------------------------------------------------- */ void FixWall::pre_force(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixWall::post_force(int vflag) { // energy and virial setup eflag = 0; if (vflag) v_setup(vflag); else evflag = 0; for (int m = 0; m <= nwall; m++) ewall[m] = 0.0; // coord = current position of wall // evaluate variables if necessary, wrap with clear/add // for epsilon/sigma variables need to re-invoke precompute() if (varflag) modify->clearstep_compute(); double coord; for (int m = 0; m < nwall; m++) { if (xstyle[m] == VARIABLE) { coord = input->variable->compute_equal(xindex[m]); if (wallwhich[m] < YLO) coord *= xscale; else if (wallwhich[m] < ZLO) coord *= yscale; else coord *= zscale; } else coord = coord0[m]; if (wstyle[m] == VARIABLE) { if (estyle[m] == VARIABLE) { epsilon[m] = input->variable->compute_equal(eindex[m]); if (epsilon[m] < 0.0) error->all(FLERR,"Variable evaluation in fix wall gave bad value"); } if (sstyle[m] == VARIABLE) { sigma[m] = input->variable->compute_equal(sindex[m]); if (sigma[m] < 0.0) error->all(FLERR,"Variable evaluation in fix wall gave bad value"); } precompute(m); } wall_particle(m,wallwhich[m],coord); } if (varflag) modify->addstep_compute(update->ntimestep + 1); } /* ---------------------------------------------------------------------- */ void FixWall::post_force_respa(int vflag, int ilevel, int /*iloop*/) { if (ilevel == ilevel_respa) post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixWall::min_post_force(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- energy of wall interaction ------------------------------------------------------------------------- */ double FixWall::compute_scalar() { // only sum across procs one time if (eflag == 0) { MPI_Allreduce(ewall,ewall_all,nwall+1,MPI_DOUBLE,MPI_SUM,world); eflag = 1; } return ewall_all[0]; } /* ---------------------------------------------------------------------- components of force on wall ------------------------------------------------------------------------- */ double FixWall::compute_vector(int n) { // only sum across procs one time if (eflag == 0) { MPI_Allreduce(ewall,ewall_all,nwall+1,MPI_DOUBLE,MPI_SUM,world); eflag = 1; } return ewall_all[n+1]; }