860 lines
27 KiB
C++
860 lines
27 KiB
C++
/* ----------------------------------------------------------------------
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LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
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https://lammps.sandia.gov/, Sandia National Laboratories
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Steve Plimpton, sjplimp@sandia.gov
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Copyright (2003) Sandia Corporation. Under the terms of Contract
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DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
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certain rights in this software. This software is distributed under
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the GNU General Public License.
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See the README file in the top-level LAMMPS directory.
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------------------------------------------------------------------------- */
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#include "force.h"
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#include "style_angle.h" // IWYU pragma: keep
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#include "style_bond.h" // IWYU pragma: keep
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#include "style_dihedral.h" // IWYU pragma: keep
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#include "style_improper.h" // IWYU pragma: keep
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#include "style_kspace.h" // IWYU pragma: keep
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#include "style_pair.h" // IWYU pragma: keep
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#include "angle.h"
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#include "atom.h"
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#include "bond.h"
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#include "bond_hybrid.h"
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#include "comm.h"
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#include "dihedral.h"
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#include "error.h"
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#include "improper.h"
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#include "kspace.h"
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#include "pair.h"
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#include "pair_hybrid.h"
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#include "pair_hybrid_overlay.h"
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#include <cstring>
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using namespace LAMMPS_NS;
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#define MAXLINE 1024
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/* ---------------------------------------------------------------------- */
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Force::Force(LAMMPS *lmp) : Pointers(lmp)
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{
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newton = newton_pair = newton_bond = 1;
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special_lj[0] = special_coul[0] = 1.0;
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special_lj[1] = special_lj[2] = special_lj[3] = 0.0;
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special_coul[1] = special_coul[2] = special_coul[3] = 0.0;
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special_angle = special_dihedral = 0;
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special_extra = 0;
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dielectric = 1.0;
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qqr2e_lammps_real = 332.06371; // these constants are toggled
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qqr2e_charmm_real = 332.0716; // by new CHARMM pair styles
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pair = nullptr;
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bond = nullptr;
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angle = nullptr;
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dihedral = nullptr;
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improper = nullptr;
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kspace = nullptr;
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char *str = (char *) "none";
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int n = strlen(str) + 1;
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pair_style = new char[n];
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strcpy(pair_style,str);
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bond_style = new char[n];
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strcpy(bond_style,str);
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angle_style = new char[n];
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strcpy(angle_style,str);
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dihedral_style = new char[n];
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strcpy(dihedral_style,str);
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improper_style = new char[n];
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strcpy(improper_style,str);
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kspace_style = new char[n];
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strcpy(kspace_style,str);
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pair_restart = nullptr;
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create_factories();
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}
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void _noopt Force::create_factories()
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{
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// fill pair map with pair styles listed in style_pair.h
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pair_map = new PairCreatorMap();
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#define PAIR_CLASS
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#define PairStyle(key,Class) \
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(*pair_map)[#key] = &pair_creator<Class>;
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#include "style_pair.h"
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#undef PairStyle
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#undef PAIR_CLASS
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bond_map = new BondCreatorMap();
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#define BOND_CLASS
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#define BondStyle(key,Class) \
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(*bond_map)[#key] = &bond_creator<Class>;
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#include "style_bond.h"
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#undef BondStyle
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#undef BOND_CLASS
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angle_map = new AngleCreatorMap();
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#define ANGLE_CLASS
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#define AngleStyle(key,Class) \
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(*angle_map)[#key] = &angle_creator<Class>;
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#include "style_angle.h"
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#undef AngleStyle
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#undef ANGLE_CLASS
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dihedral_map = new DihedralCreatorMap();
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#define DIHEDRAL_CLASS
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#define DihedralStyle(key,Class) \
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(*dihedral_map)[#key] = &dihedral_creator<Class>;
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#include "style_dihedral.h"
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#undef DihedralStyle
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#undef DIHEDRAL_CLASS
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improper_map = new ImproperCreatorMap();
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#define IMPROPER_CLASS
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#define ImproperStyle(key,Class) \
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(*improper_map)[#key] = &improper_creator<Class>;
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#include "style_improper.h"
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#undef ImproperStyle
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#undef IMPROPER_CLASS
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kspace_map = new KSpaceCreatorMap();
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#define KSPACE_CLASS
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#define KSpaceStyle(key,Class) \
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(*kspace_map)[#key] = &kspace_creator<Class>;
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#include "style_kspace.h"
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#undef KSpaceStyle
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#undef KSPACE_CLASS
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}
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/* ---------------------------------------------------------------------- */
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Force::~Force()
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{
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delete [] pair_style;
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delete [] bond_style;
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delete [] angle_style;
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delete [] dihedral_style;
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delete [] improper_style;
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delete [] kspace_style;
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delete [] pair_restart;
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if (pair) delete pair;
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if (bond) delete bond;
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if (angle) delete angle;
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if (dihedral) delete dihedral;
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if (improper) delete improper;
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if (kspace) delete kspace;
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pair = nullptr;
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bond = nullptr;
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angle = nullptr;
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dihedral = nullptr;
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improper = nullptr;
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kspace = nullptr;
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delete pair_map;
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delete bond_map;
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delete angle_map;
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delete dihedral_map;
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delete improper_map;
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delete kspace_map;
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}
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/* ---------------------------------------------------------------------- */
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void Force::init()
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{
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qqrd2e = qqr2e/dielectric;
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// check if pair style must be specified after restart
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if (pair_restart) {
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if (!pair)
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error->all(FLERR,fmt::format("Must re-specify non-restarted pair style "
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"({}) after read_restart", pair_restart));
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}
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if (kspace) kspace->init(); // kspace must come before pair
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if (pair) pair->init(); // so g_ewald is defined
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if (bond) bond->init();
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if (angle) angle->init();
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if (dihedral) dihedral->init();
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if (improper) improper->init();
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// print warnings if topology and force field are inconsistent
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if (comm->me == 0) {
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if (!bond && (atom->nbonds > 0)) {
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error->warning(FLERR,"Bonds are defined but no bond style is set");
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if ((special_lj[1] != 1.0) || (special_coul[1] != 1.0))
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error->warning(FLERR,"Likewise 1-2 special neighbor interactions != 1.0");
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}
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if (!angle && (atom->nangles > 0)) {
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error->warning(FLERR,"Angles are defined but no angle style is set");
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if ((special_lj[2] != 1.0) || (special_coul[2] != 1.0))
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error->warning(FLERR,"Likewise 1-3 special neighbor interactions != 1.0");
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}
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if (!dihedral && (atom->ndihedrals > 0)) {
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error->warning(FLERR,"Dihedrals are defined but no dihedral style is set");
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if ((special_lj[3] != 1.0) || (special_coul[3] != 1.0))
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error->warning(FLERR,"Likewise 1-4 special neighbor interactions != 1.0");
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}
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if (!improper && (atom->nimpropers > 0))
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error->warning(FLERR,"Impropers are defined but no improper style is set");
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}
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}
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/* ---------------------------------------------------------------------- */
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void Force::setup()
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{
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if (pair) pair->setup();
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}
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/* ----------------------------------------------------------------------
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create a pair style, called from input script or restart file
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------------------------------------------------------------------------- */
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void Force::create_pair(const std::string &style, int trysuffix)
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{
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delete [] pair_style;
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if (pair) delete pair;
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if (pair_restart) delete [] pair_restart;
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pair_style = nullptr;
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pair = nullptr;
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pair_restart = nullptr;
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int sflag;
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pair = new_pair(style,trysuffix,sflag);
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store_style(pair_style,style,sflag);
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}
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/* ----------------------------------------------------------------------
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generate a pair class
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if trysuffix = 1, try first with suffix1/2 appended
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return sflag = 0 for no suffix added, 1 or 2 or 3 for suffix1/2/p added
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special case: if suffixp exists only try suffixp, not suffix
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------------------------------------------------------------------------- */
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Pair *Force::new_pair(const std::string &style, int trysuffix, int &sflag)
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{
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if (trysuffix && lmp->suffix_enable) {
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if (lmp->suffixp) {
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sflag = 3;
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std::string estyle = style + "/" + lmp->suffixp;
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if (pair_map->find(estyle) != pair_map->end()) {
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PairCreator &pair_creator = (*pair_map)[estyle];
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return pair_creator(lmp);
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}
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}
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if (lmp->suffix && !lmp->suffixp) {
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sflag = 1;
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std::string estyle = style + "/" + lmp->suffix;
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if (pair_map->find(estyle) != pair_map->end()) {
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PairCreator &pair_creator = (*pair_map)[estyle];
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return pair_creator(lmp);
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}
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}
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if (lmp->suffix2) {
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sflag = 2;
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std::string estyle = style + "/" + lmp->suffix2;
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if (pair_map->find(estyle) != pair_map->end()) {
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PairCreator &pair_creator = (*pair_map)[estyle];
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return pair_creator(lmp);
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}
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}
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}
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sflag = 0;
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if (style == "none") return nullptr;
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if (pair_map->find(style) != pair_map->end()) {
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PairCreator &pair_creator = (*pair_map)[style];
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return pair_creator(lmp);
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}
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error->all(FLERR,utils::check_packages_for_style("pair",style,lmp));
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return nullptr;
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}
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/* ----------------------------------------------------------------------
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one instance per pair style in style_pair.h
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------------------------------------------------------------------------- */
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template <typename T>
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Pair *Force::pair_creator(LAMMPS *lmp)
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{
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return new T(lmp);
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}
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/* ----------------------------------------------------------------------
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return ptr to Pair class if matches word or matches hybrid sub-style
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if exact, then style name must be exact match to word
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if not exact, style name must contain word
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if nsub > 0, match Nth hybrid sub-style
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return nullptr if no match or if nsub=0 and multiple sub-styles match
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------------------------------------------------------------------------- */
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Pair *Force::pair_match(const std::string &word, int exact, int nsub)
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{
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int iwhich,count;
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if (exact && (word == pair_style)) return pair;
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else if (!exact && utils::strmatch(pair_style,word)) return pair;
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else if (utils::strmatch(pair_style,"^hybrid")) {
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PairHybrid *hybrid = (PairHybrid *) pair;
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count = 0;
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for (int i = 0; i < hybrid->nstyles; i++)
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if ((exact && (word == hybrid->keywords[i])) ||
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(!exact && utils::strmatch(hybrid->keywords[i],word))) {
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iwhich = i;
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count++;
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if (nsub == count) return hybrid->styles[iwhich];
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}
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if (count == 1) return hybrid->styles[iwhich];
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}
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return nullptr;
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}
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/* ----------------------------------------------------------------------
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return style name of Pair class that matches Pair ptr
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called by Neighbor::print_neigh_info()
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return nullptr if no match
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------------------------------------------------------------------------- */
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char *Force::pair_match_ptr(Pair *ptr)
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{
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if (ptr == pair) return pair_style;
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if (utils::strmatch(pair_style,"^hybrid")) {
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PairHybrid *hybrid = (PairHybrid *) pair;
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for (int i = 0; i < hybrid->nstyles; i++)
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if (ptr == hybrid->styles[i]) return hybrid->keywords[i];
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}
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return nullptr;
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}
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/* ----------------------------------------------------------------------
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create a bond style, called from input script or restart file
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------------------------------------------------------------------------- */
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void Force::create_bond(const std::string &style, int trysuffix)
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{
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delete [] bond_style;
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if (bond) delete bond;
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int sflag;
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bond = new_bond(style,trysuffix,sflag);
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store_style(bond_style,style,sflag);
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}
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/* ----------------------------------------------------------------------
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generate a bond class, fist with suffix appended
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------------------------------------------------------------------------- */
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Bond *Force::new_bond(const std::string &style, int trysuffix, int &sflag)
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{
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if (trysuffix && lmp->suffix_enable) {
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if (lmp->suffix) {
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sflag = 1;
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std::string estyle = style + "/" + lmp->suffix;
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if (bond_map->find(estyle) != bond_map->end()) {
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BondCreator &bond_creator = (*bond_map)[estyle];
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return bond_creator(lmp);
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}
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}
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if (lmp->suffix2) {
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sflag = 2;
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std::string estyle = style + "/" + lmp->suffix2;
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if (bond_map->find(estyle) != bond_map->end()) {
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BondCreator &bond_creator = (*bond_map)[estyle];
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return bond_creator(lmp);
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}
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}
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}
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sflag = 0;
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if (style == "none") return nullptr;
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if (bond_map->find(style) != bond_map->end()) {
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BondCreator &bond_creator = (*bond_map)[style];
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return bond_creator(lmp);
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}
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error->all(FLERR,utils::check_packages_for_style("bond",style,lmp));
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return nullptr;
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}
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/* ----------------------------------------------------------------------
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one instance per bond style in style_bond.h
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------------------------------------------------------------------------- */
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template <typename T>
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Bond *Force::bond_creator(LAMMPS *lmp)
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{
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return new T(lmp);
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}
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/* ----------------------------------------------------------------------
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return ptr to current bond class or hybrid sub-class if matches style
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------------------------------------------------------------------------- */
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Bond *Force::bond_match(const std::string &style)
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{
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if (style == bond_style) return bond;
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else if (strcmp(bond_style,"hybrid") == 0) {
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BondHybrid *hybrid = (BondHybrid *) bond;
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for (int i = 0; i < hybrid->nstyles; i++)
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if (style == hybrid->keywords[i]) return hybrid->styles[i];
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}
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return nullptr;
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}
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/* ----------------------------------------------------------------------
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create an angle style, called from input script or restart file
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------------------------------------------------------------------------- */
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void Force::create_angle(const std::string &style, int trysuffix)
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{
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delete [] angle_style;
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if (angle) delete angle;
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int sflag;
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angle = new_angle(style,trysuffix,sflag);
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store_style(angle_style,style,sflag);
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}
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/* ----------------------------------------------------------------------
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generate an angle class
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------------------------------------------------------------------------- */
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Angle *Force::new_angle(const std::string &style, int trysuffix, int &sflag)
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{
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if (trysuffix && lmp->suffix_enable) {
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if (lmp->suffix) {
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sflag = 1;
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std::string estyle = style + "/" + lmp->suffix;
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if (angle_map->find(estyle) != angle_map->end()) {
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AngleCreator &angle_creator = (*angle_map)[estyle];
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return angle_creator(lmp);
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}
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}
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if (lmp->suffix2) {
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sflag = 2;
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std::string estyle = style + "/" + lmp->suffix;
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if (angle_map->find(estyle) != angle_map->end()) {
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AngleCreator &angle_creator = (*angle_map)[estyle];
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return angle_creator(lmp);
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}
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}
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}
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sflag = 0;
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if (style == "none") return nullptr;
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if (angle_map->find(style) != angle_map->end()) {
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AngleCreator &angle_creator = (*angle_map)[style];
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return angle_creator(lmp);
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}
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error->all(FLERR,utils::check_packages_for_style("angle",style,lmp));
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return nullptr;
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}
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/* ----------------------------------------------------------------------
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one instance per angle style in style_angle.h
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------------------------------------------------------------------------- */
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template <typename T>
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Angle *Force::angle_creator(LAMMPS *lmp)
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{
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return new T(lmp);
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}
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/* ----------------------------------------------------------------------
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return ptr to current angle class or hybrid sub-class if matches style
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------------------------------------------------------------------------- */
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Angle *Force::angle_match(const std::string &style)
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{
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if (style == angle_style) return angle;
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else if (utils::strmatch(angle_style,"^hybrid")) {
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AngleHybrid *hybrid = (AngleHybrid *) angle;
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for (int i = 0; i < hybrid->nstyles; i++)
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if (style == hybrid->keywords[i]) return hybrid->styles[i];
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}
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return nullptr;
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}
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/* ----------------------------------------------------------------------
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create a dihedral style, called from input script or restart file
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------------------------------------------------------------------------- */
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void Force::create_dihedral(const std::string &style, int trysuffix)
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{
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delete [] dihedral_style;
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if (dihedral) delete dihedral;
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int sflag;
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dihedral = new_dihedral(style,trysuffix,sflag);
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store_style(dihedral_style,style,sflag);
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}
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/* ----------------------------------------------------------------------
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generate a dihedral class
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------------------------------------------------------------------------- */
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Dihedral *Force::new_dihedral(const std::string &style, int trysuffix, int &sflag)
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{
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if (trysuffix && lmp->suffix_enable) {
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if (lmp->suffix) {
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sflag = 1;
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std::string estyle = style + "/" + lmp->suffix;
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if (dihedral_map->find(estyle) != dihedral_map->end()) {
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DihedralCreator &dihedral_creator = (*dihedral_map)[estyle];
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return dihedral_creator(lmp);
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}
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}
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if (lmp->suffix2) {
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sflag = 2;
|
|
std::string estyle = style + "/" + lmp->suffix2;
|
|
if (dihedral_map->find(estyle) != dihedral_map->end()) {
|
|
DihedralCreator &dihedral_creator = (*dihedral_map)[estyle];
|
|
return dihedral_creator(lmp);
|
|
}
|
|
}
|
|
}
|
|
|
|
sflag = 0;
|
|
if (style == "none") return nullptr;
|
|
if (dihedral_map->find(style) != dihedral_map->end()) {
|
|
DihedralCreator &dihedral_creator = (*dihedral_map)[style];
|
|
return dihedral_creator(lmp);
|
|
}
|
|
|
|
error->all(FLERR,utils::check_packages_for_style("dihedral",style,lmp));
|
|
|
|
return nullptr;
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
one instance per dihedral style in style_dihedral.h
|
|
------------------------------------------------------------------------- */
|
|
|
|
template <typename T>
|
|
Dihedral *Force::dihedral_creator(LAMMPS *lmp)
|
|
{
|
|
return new T(lmp);
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
return ptr to current angle class or hybrid sub-class if matches style
|
|
------------------------------------------------------------------------- */
|
|
|
|
Dihedral *Force::dihedral_match(const std::string &style)
|
|
{
|
|
if (style == dihedral_style) return dihedral;
|
|
else if (utils::strmatch(dihedral_style,"^hybrid")) {
|
|
DihedralHybrid *hybrid = (DihedralHybrid *) dihedral;
|
|
for (int i = 0; i < hybrid->nstyles; i++)
|
|
if (style == hybrid->keywords[i]) return hybrid->styles[i];
|
|
}
|
|
return nullptr;
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
create an improper style, called from input script or restart file
|
|
------------------------------------------------------------------------- */
|
|
|
|
void Force::create_improper(const std::string &style, int trysuffix)
|
|
{
|
|
delete [] improper_style;
|
|
if (improper) delete improper;
|
|
|
|
int sflag;
|
|
improper = new_improper(style,trysuffix,sflag);
|
|
store_style(improper_style,style,sflag);
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
generate a improper class
|
|
------------------------------------------------------------------------- */
|
|
|
|
Improper *Force::new_improper(const std::string &style, int trysuffix, int &sflag)
|
|
{
|
|
if (trysuffix && lmp->suffix_enable) {
|
|
if (lmp->suffix) {
|
|
sflag = 1;
|
|
std::string estyle = style + "/" + lmp->suffix;
|
|
if (improper_map->find(estyle) != improper_map->end()) {
|
|
ImproperCreator &improper_creator = (*improper_map)[estyle];
|
|
return improper_creator(lmp);
|
|
}
|
|
}
|
|
|
|
if (lmp->suffix2) {
|
|
sflag = 2;
|
|
std::string estyle = style + "/" + lmp->suffix2;
|
|
if (improper_map->find(estyle) != improper_map->end()) {
|
|
ImproperCreator &improper_creator = (*improper_map)[estyle];
|
|
return improper_creator(lmp);
|
|
}
|
|
}
|
|
}
|
|
|
|
sflag = 0;
|
|
if (style == "none") return nullptr;
|
|
if (improper_map->find(style) != improper_map->end()) {
|
|
ImproperCreator &improper_creator = (*improper_map)[style];
|
|
return improper_creator(lmp);
|
|
}
|
|
|
|
error->all(FLERR,utils::check_packages_for_style("improper",style,lmp));
|
|
|
|
return nullptr;
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
one instance per improper style in style_improper.h
|
|
------------------------------------------------------------------------- */
|
|
|
|
template <typename T>
|
|
Improper *Force::improper_creator(LAMMPS *lmp)
|
|
{
|
|
return new T(lmp);
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
return ptr to current improper class or hybrid sub-class if matches style
|
|
------------------------------------------------------------------------- */
|
|
|
|
Improper *Force::improper_match(const std::string &style)
|
|
{
|
|
if (style == improper_style) return improper;
|
|
else if (utils::strmatch(improper_style,"^hybrid")) {
|
|
ImproperHybrid *hybrid = (ImproperHybrid *) improper;
|
|
for (int i = 0; i < hybrid->nstyles; i++)
|
|
if (style == hybrid->keywords[i]) return hybrid->styles[i];
|
|
}
|
|
return nullptr;
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
new kspace style
|
|
------------------------------------------------------------------------- */
|
|
|
|
void Force::create_kspace(const std::string &style, int trysuffix)
|
|
{
|
|
delete [] kspace_style;
|
|
if (kspace) delete kspace;
|
|
|
|
int sflag;
|
|
kspace = new_kspace(style,trysuffix,sflag);
|
|
store_style(kspace_style,style,sflag);
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
generate a kspace class
|
|
------------------------------------------------------------------------- */
|
|
|
|
KSpace *Force::new_kspace(const std::string &style, int trysuffix, int &sflag)
|
|
{
|
|
if (trysuffix && lmp->suffix_enable) {
|
|
if (lmp->suffix) {
|
|
sflag = 1;
|
|
std::string estyle = style + "/" + lmp->suffix;
|
|
if (kspace_map->find(estyle) != kspace_map->end()) {
|
|
KSpaceCreator &kspace_creator = (*kspace_map)[estyle];
|
|
return kspace_creator(lmp);
|
|
}
|
|
}
|
|
|
|
if (lmp->suffix2) {
|
|
sflag = 1;
|
|
std::string estyle = style + "/" + lmp->suffix2;
|
|
if (kspace_map->find(estyle) != kspace_map->end()) {
|
|
KSpaceCreator &kspace_creator = (*kspace_map)[estyle];
|
|
return kspace_creator(lmp);
|
|
}
|
|
}
|
|
}
|
|
|
|
sflag = 0;
|
|
if (style == "none") return nullptr;
|
|
if (kspace_map->find(style) != kspace_map->end()) {
|
|
KSpaceCreator &kspace_creator = (*kspace_map)[style];
|
|
return kspace_creator(lmp);
|
|
}
|
|
|
|
error->all(FLERR,utils::check_packages_for_style("kspace",style,lmp));
|
|
|
|
return nullptr;
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
one instance per kspace style in style_kspace.h
|
|
------------------------------------------------------------------------- */
|
|
|
|
template <typename T>
|
|
KSpace *Force::kspace_creator(LAMMPS *lmp)
|
|
{
|
|
return new T(lmp);
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
return ptr to Kspace class if matches word
|
|
if exact, then style name must be exact match to word
|
|
if not exact, style name must contain word
|
|
return nullptr if no match
|
|
------------------------------------------------------------------------- */
|
|
|
|
KSpace *Force::kspace_match(const std::string &word, int exact)
|
|
{
|
|
if (exact && (word == kspace_style)) return kspace;
|
|
else if (!exact && utils::strmatch(kspace_style,word)) return kspace;
|
|
return nullptr;
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
store style name in str allocated here
|
|
if sflag = 0, no suffix
|
|
if sflag = 1/2/3, append suffix or suffix2 or suffixp to style
|
|
------------------------------------------------------------------------- */
|
|
|
|
void Force::store_style(char *&str, const std::string &style, int sflag)
|
|
{
|
|
std::string estyle = style;
|
|
|
|
if (sflag == 1) estyle += std::string("/") + lmp->suffix;
|
|
else if (sflag == 2) estyle += std::string("/") + lmp->suffix2;
|
|
else if (sflag == 3) estyle += std::string("/") + lmp->suffixp;
|
|
|
|
str = new char[estyle.size()+1];
|
|
strcpy(str,estyle.c_str());
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
set special bond values
|
|
------------------------------------------------------------------------- */
|
|
|
|
void Force::set_special(int narg, char **arg)
|
|
{
|
|
if (narg == 0) error->all(FLERR,"Illegal special_bonds command");
|
|
|
|
// defaults, but do not reset special_extra
|
|
|
|
special_lj[1] = special_lj[2] = special_lj[3] = 0.0;
|
|
special_coul[1] = special_coul[2] = special_coul[3] = 0.0;
|
|
special_angle = special_dihedral = 0;
|
|
|
|
int iarg = 0;
|
|
while (iarg < narg) {
|
|
if (strcmp(arg[iarg],"amber") == 0) {
|
|
if (iarg+1 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
special_lj[1] = 0.0;
|
|
special_lj[2] = 0.0;
|
|
special_lj[3] = 0.5;
|
|
special_coul[1] = 0.0;
|
|
special_coul[2] = 0.0;
|
|
special_coul[3] = 5.0/6.0;
|
|
iarg += 1;
|
|
} else if (strcmp(arg[iarg],"charmm") == 0) {
|
|
if (iarg+1 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
special_lj[1] = 0.0;
|
|
special_lj[2] = 0.0;
|
|
special_lj[3] = 0.0;
|
|
special_coul[1] = 0.0;
|
|
special_coul[2] = 0.0;
|
|
special_coul[3] = 0.0;
|
|
iarg += 1;
|
|
} else if (strcmp(arg[iarg],"dreiding") == 0) {
|
|
if (iarg+1 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
special_lj[1] = 0.0;
|
|
special_lj[2] = 0.0;
|
|
special_lj[3] = 1.0;
|
|
special_coul[1] = 0.0;
|
|
special_coul[2] = 0.0;
|
|
special_coul[3] = 1.0;
|
|
iarg += 1;
|
|
} else if (strcmp(arg[iarg],"fene") == 0) {
|
|
if (iarg+1 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
special_lj[1] = 0.0;
|
|
special_lj[2] = 1.0;
|
|
special_lj[3] = 1.0;
|
|
special_coul[1] = 0.0;
|
|
special_coul[2] = 1.0;
|
|
special_coul[3] = 1.0;
|
|
iarg += 1;
|
|
} else if (strcmp(arg[iarg],"lj/coul") == 0) {
|
|
if (iarg+4 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
special_lj[1] = special_coul[1] = utils::numeric(FLERR,arg[iarg+1],false,lmp);
|
|
special_lj[2] = special_coul[2] = utils::numeric(FLERR,arg[iarg+2],false,lmp);
|
|
special_lj[3] = special_coul[3] = utils::numeric(FLERR,arg[iarg+3],false,lmp);
|
|
iarg += 4;
|
|
} else if (strcmp(arg[iarg],"lj") == 0) {
|
|
if (iarg+4 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
special_lj[1] = utils::numeric(FLERR,arg[iarg+1],false,lmp);
|
|
special_lj[2] = utils::numeric(FLERR,arg[iarg+2],false,lmp);
|
|
special_lj[3] = utils::numeric(FLERR,arg[iarg+3],false,lmp);
|
|
iarg += 4;
|
|
} else if (strcmp(arg[iarg],"coul") == 0) {
|
|
if (iarg+4 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
special_coul[1] = utils::numeric(FLERR,arg[iarg+1],false,lmp);
|
|
special_coul[2] = utils::numeric(FLERR,arg[iarg+2],false,lmp);
|
|
special_coul[3] = utils::numeric(FLERR,arg[iarg+3],false,lmp);
|
|
iarg += 4;
|
|
} else if (strcmp(arg[iarg],"angle") == 0) {
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
if (strcmp(arg[iarg+1],"no") == 0) special_angle = 0;
|
|
else if (strcmp(arg[iarg+1],"yes") == 0) special_angle = 1;
|
|
else error->all(FLERR,"Illegal special_bonds command");
|
|
iarg += 2;
|
|
} else if (strcmp(arg[iarg],"dihedral") == 0) {
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal special_bonds command");
|
|
if (strcmp(arg[iarg+1],"no") == 0) special_dihedral = 0;
|
|
else if (strcmp(arg[iarg+1],"yes") == 0) special_dihedral = 1;
|
|
else error->all(FLERR,"Illegal special_bonds command");
|
|
iarg += 2;
|
|
} else error->all(FLERR,"Illegal special_bonds command");
|
|
}
|
|
|
|
for (int i = 1; i <= 3; i++)
|
|
if (special_lj[i] < 0.0 || special_lj[i] > 1.0 ||
|
|
special_coul[i] < 0.0 || special_coul[i] > 1.0)
|
|
error->all(FLERR,"Illegal special_bonds command");
|
|
}
|
|
|
|
/* ----------------------------------------------------------------------
|
|
memory usage of force classes
|
|
------------------------------------------------------------------------- */
|
|
|
|
double Force::memory_usage()
|
|
{
|
|
double bytes = 0;
|
|
if (pair) bytes += static_cast<bigint> (pair->memory_usage());
|
|
if (bond) bytes += static_cast<bigint> (bond->memory_usage());
|
|
if (angle) bytes += static_cast<bigint> (angle->memory_usage());
|
|
if (dihedral) bytes += static_cast<bigint> (dihedral->memory_usage());
|
|
if (improper) bytes += static_cast<bigint> (improper->memory_usage());
|
|
if (kspace) bytes += static_cast<bigint> (kspace->memory_usage());
|
|
return bytes;
|
|
}
|