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090778c42bf2b2040de605f54ab9b4ba8cdb5eba
lammps/doc/src
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Axel Kohlmeyer 090778c42b Merge pull request #1204 from lammps/doc-plumed 
Linkage mode improvements and documentation updates for USER-PLUMED package
2018-11-15 13:48:58 -05:00
..
99
Third batch of spelling fixes in manual
2017-03-07 00:51:31 -05:00
2001
Third batch of spelling fixes in manual
2017-03-07 00:51:31 -05:00
Developer
convert double quotes to latex style
2018-10-23 09:17:00 -04:00
Eqs
Added compute for Polyhedral Template Matching
2018-09-11 16:41:44 -04:00
JPG
Merge https://github.com/lammps/lammps
2018-07-26 11:42:53 +01:00
PDF
Update Colvars library to version 2018-10-16
2018-11-02 17:45:20 -04:00
USER/atc
correct link in AtC html docs
2018-08-22 19:16:11 -04:00
angle_charmm.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_class2.txt
updates some one-line style defs
2018-10-19 09:53:19 -06:00
angle_coeff.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
angle_cosine_buck6d.txt
added one-line pair descriptions
2018-10-19 09:53:19 -06:00
angle_cosine_delta.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_cosine_periodic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_cosine_shift_exp.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_cosine_shift.txt
fix a bunch more broken, duplicate links and misformatted text
2018-08-09 19:46:25 +02:00
angle_cosine_squared.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_cosine.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_dipole.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_fourier_simple.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_fourier.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_harmonic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_hybrid.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_none.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
angle_quartic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_sdk.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
angle_style.txt
updates some one-line style defs
2018-10-19 09:53:19 -06:00
angle_table.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
angle_zero.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
angles.txt
include added docpages in toctrees for sphinx
2018-02-01 18:50:25 +01:00
atom_modify.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
atom_style.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
balance.txt
fix broken links in manual
2018-10-21 18:39:25 -04:00
bond_class2.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_coeff.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
bond_fene_expand.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_fene.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_gromos.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_harmonic_shift_cut.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_harmonic_shift.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_harmonic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_hybrid.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_morse.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_none.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
bond_nonlinear.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_oxdna.txt
added one-line pair descriptions
2018-10-19 09:53:19 -06:00
bond_quartic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_style.txt
updates some one-line style defs
2018-10-19 09:53:19 -06:00
bond_table.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
bond_write.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
bond_zero.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
bonds.txt
add gromos bond style
2017-10-16 14:57:12 -04:00
boundary.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
box.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Build_basics.txt
fix typo reported in #1199
2018-11-09 08:03:19 -05:00
Build_cmake.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
Build_extras.txt
add detailed build instructions and discussion of linkage modes for PLUMED library and USER-PLUMED package
2018-11-15 11:35:04 -05:00
Build_link.txt
changes to replace Section_start.txt
2018-08-09 10:19:10 -06:00
Build_make.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
Build_package.txt
doc page additions for USER-PLUMED package
2018-11-13 08:29:07 -07:00
Build_settings.txt
fix some more spelling issues
2018-08-22 20:43:35 -04:00
Build_windows.txt
precompiled -> pre-compiled
2018-08-22 22:02:01 -04:00
Build.txt
add notes on compiling LAMMPS for windows
2018-08-22 09:41:12 -04:00
change_box.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
clear.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
comm_modify.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
comm_style.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Commands_all.txt
added new commands to doc pages, fixed a few missing entries as well
2018-11-12 17:23:15 -07:00
Commands_bond.txt
updating files that have lists of command styles
2018-10-19 09:53:18 -06:00
Commands_category.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Commands_compute.txt
Merge pull request #1152 from lammps/doc-adjust2
2018-10-23 13:05:04 -04:00
Commands_fix.txt
added new commands to doc pages, fixed a few missing entries as well
2018-11-12 17:23:15 -07:00
Commands_input.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Commands_kspace.txt
another doc change
2018-08-22 10:22:51 -06:00
commands_list.txt
added new commands to doc pages, fixed a few missing entries as well
2018-11-12 17:23:15 -07:00
Commands_pair.txt
first commit: added SDPD
2018-10-30 17:40:00 +03:30
Commands_parse.txt
fix some speelink ehrrors
2018-08-22 20:35:35 -04:00
Commands_structure.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Commands.txt
Fixes issue #1058
2018-08-17 10:13:19 -04:00
compute_ackland_atom.txt
last round of spelling fixes
2018-08-22 22:35:35 -04:00
compute_adf.txt
Eliminated another initialization error and tweaked rdf-adf example
2018-10-20 16:46:45 -06:00
compute_angle_local.txt
add variable option to compute bond/angle/dihedral local
2018-09-04 14:48:44 -06:00
compute_angle.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_angmom_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_basal_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_body_local.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_bond_local.txt
add variable option to compute bond/angle/dihedral local
2018-09-04 14:48:44 -06:00
compute_bond.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_centro_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_chunk_atom.txt
2 new computes: chunk/spread/atom and reduce/chunk
2018-08-31 13:44:49 -06:00
compute_chunk_spread_atom.txt
doc adjust
2018-08-31 13:53:02 -06:00
compute_cluster_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_cna_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_cnp_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_com_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_com.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_contact_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_coord_atom.txt
fix some more broken links detected by ebook conversion
2018-08-22 19:16:36 -04:00
compute_damage_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_dihedral_local.txt
add variable option to compute bond/angle/dihedral local
2018-09-04 14:48:44 -06:00
compute_dihedral.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_dilatation_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_dipole_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_displace_atom.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
compute_dpd_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_dpd.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_edpd_temp_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_entropy_atom.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
compute_erotate_asphere.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_erotate_rigid.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_erotate_sphere_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_erotate_sphere.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_event_displace.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_fep.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_global_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_group_group.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_gyration_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_gyration.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_heat_flux.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_hexorder_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_improper_local.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_improper.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_inertia_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_ke_atom_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_ke_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_ke_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_ke_rigid.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_ke.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_meso_e_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_meso_rho_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_meso_t_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_modify.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
compute_msd_chunk.txt
fix typos in compute msd/chunk
2018-10-02 16:29:18 +02:00
compute_msd_nongauss.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_msd.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_omega_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_orientorder_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_pair_local.txt
fix a bunch of typos and broken links as detected by ebook-convert
2018-08-12 17:16:24 +02:00
compute_pair.txt
change implementation to be consistent with pair_coeff and remain backward compatible
2018-10-08 17:23:22 +02:00
compute_pe_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_pe.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_plasticity_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_pressure_cylinder.txt
reformat compute pressure/cylinder docs and integrate it into the manual
2018-10-02 11:51:23 -04:00
compute_pressure_uef.txt
fix some more broken links detected by ebook conversion
2018-08-22 19:16:36 -04:00
compute_pressure.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_property_atom.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
compute_property_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_property_local.txt
change zero-size shrink box to original box
2018-08-09 08:50:11 -06:00
compute_ptm_atom.txt
replace non-ASCII character
2018-11-09 08:03:41 -05:00
compute_rdf.txt
Added compute_rdf.txt
2018-10-19 18:43:58 -06:00
compute_reduce_chunk.txt
2 new computes: chunk/spread/atom and reduce/chunk
2018-08-31 13:44:49 -06:00
compute_reduce.txt
2 new computes: chunk/spread/atom and reduce/chunk
2018-08-31 13:44:49 -06:00
compute_rigid_local.txt
atomID -> atom-ID
2018-08-22 22:28:53 -04:00
compute_saed.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_slice.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_smd_contact_radius.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_damage.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_hourglass_error.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_internal_energy.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_plastic_strain_rate.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_plastic_strain.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_rho.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_tlsph_defgrad.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_tlsph_dt.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
compute_smd_tlsph_num_neighs.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_tlsph_shape.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_tlsph_strain_rate.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_tlsph_strain.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_tlsph_stress.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_triangle_vertices.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
compute_smd_ulsph_num_neighs.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_ulsph_strain_rate.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_ulsph_strain.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_ulsph_stress.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_smd_vol.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_sna_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_spin.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
compute_stress_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_stress_mop.txt
moved contents of USER-MOP package to USER-MISC as suggested by @sjplimp
2018-09-05 10:56:12 -04:00
compute_tally.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_tdpd_cc_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_temp_asphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_temp_body.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_temp_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_com.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_cs.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_deform_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_temp_deform.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_drude.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_temp_partial.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_temp_profile.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_ramp.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_region_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_temp_region.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_rotate.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_temp_sphere.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_temp_uef.txt
fix some more broken links detected by ebook conversion
2018-08-22 19:16:36 -04:00
compute_temp.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_ti.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_torque_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_vacf.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_vcm_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
compute_voronoi_atom.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute_xrd.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
compute.txt
added new commands to doc pages, fixed a few missing entries as well
2018-11-12 17:23:15 -07:00
computes.txt
integrate compute adf into manual build infrastructure
2018-10-20 06:45:28 -04:00
create_atoms.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
create_bonds.txt
fix a bunch of typos and broken links as detected by ebook-convert
2018-08-12 17:16:24 +02:00
create_box.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
delete_atoms.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
delete_bonds.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
dielectric.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
dihedral_charmm.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_class2.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_coeff.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
dihedral_cosine_shift_exp.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_fourier.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_harmonic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_helix.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_hybrid.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_multi_harmonic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_nharmonic.txt
fix typo in example input
2018-10-02 10:58:28 +02:00
dihedral_none.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
dihedral_opls.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_quadratic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_spherical.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_style.txt
updates some one-line style defs
2018-10-19 09:53:19 -06:00
dihedral_table_cut.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_table.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dihedral_zero.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
dihedrals.txt
update documentation for dihedral style table/cut
2018-05-11 16:08:23 -04:00
dimension.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
displace_atoms.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
dump_cfg_uef.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dump_h5md.txt
fix broken links in manual
2018-10-21 18:39:25 -04:00
dump_image.txt
Update manual for renamed or removed files
2018-09-27 06:23:59 -04:00
dump_modify.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
dump_molfile.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
dump_netcdf.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dump_vtk.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
dump.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
echo.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
Errors_bugs.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Errors_common.txt
fix a bunch more broken, duplicate links and misformatted text
2018-08-09 19:46:25 +02:00
Errors_messages.txt
remove references to fix ave/spatial and ave/spatial/sphere
2018-09-27 06:51:30 -04:00
Errors_warnings.txt
remove references to fix ave/spatial and ave/spatial/sphere
2018-09-27 06:51:30 -04:00
Errors.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
Examples.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_adapt_fep.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_adapt.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_addforce.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_addtorque.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_append_atoms.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_atc.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_atom_swap.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_ave_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_ave_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_ave_correlate_long.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_ave_correlate.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_ave_histo.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_ave_time.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_aveforce.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_balance.txt
fix broken links in manual
2018-10-21 18:39:25 -04:00
fix_bocs.txt
last round of spelling fixes
2018-08-22 22:35:35 -04:00
fix_bond_break.txt
reciprocal 'related commands'
2018-11-01 01:09:52 -06:00
fix_bond_create.txt
reciprocal 'related commands'
2018-11-01 01:09:52 -06:00
fix_bond_react.txt
correct formatting
2018-11-09 08:03:58 -05:00
fix_bond_swap.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_box_relax.txt
typo in fix relax/box doc page
2018-09-11 12:44:35 -06:00
fix_client_md.txt
various fixes for the manual to address breakage from merging MESSAGE and USER-SCAFACOS packages
2018-09-06 22:28:20 -04:00
fix_cmap.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_colvars.txt
interlink fixes colvars, plumed, and smd
2018-11-15 10:52:41 -05:00
fix_controller.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_deform.txt
fix a bunch more broken, duplicate links and misformatted text
2018-08-09 19:46:25 +02:00
fix_deposit.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_dpd_energy.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_dpd_source.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_drag.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_drude_transform.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_drude.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_dt_reset.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
fix_efield.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_ehex.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_enforce2d.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_eos_cv.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_eos_table_rx.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_eos_table.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_evaporate.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_external.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
fix_ffl.txt
implement conventions for unique links in docs
2018-10-02 11:25:12 +02:00
fix_filter_corotate.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
fix_flow_gauss.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_freeze.txt
Merge branch 'master' into granular-kokkos
2018-08-20 22:02:41 -04:00
fix_gcmc.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_gld.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_gle.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_gravity.txt
Merge branch 'master' into granular-kokkos
2018-08-20 22:02:41 -04:00
fix_grem.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_halt.txt
first attempt to port fix halt to minimizations
2018-10-19 07:26:49 -04:00
fix_heat.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_hyper_global.txt
correct broken links detected by make mobi
2018-11-12 21:38:26 -05:00
fix_hyper_local.txt
correct broken links in manual reported by 'make html'
2018-11-12 21:33:37 -05:00
fix_imd.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_indent.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_ipi.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
fix_langevin_drude.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_langevin_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_langevin_spin.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
fix_langevin.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_latte.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
fix_lb_fluid.txt
subdomain -> sub-domain
2018-08-22 21:50:56 -04:00
fix_lb_momentum.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_lb_pc.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_lb_rigid_pc_sphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_lb_viscous.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_lineforce.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_manifoldforce.txt
Merge branch 'collected-small-changes' into doc-reorg-start
2018-08-09 18:48:11 +02:00
fix_meso_move.txt
first commit: added SDPD
2018-10-30 17:40:00 +03:30
fix_meso_stationary.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_meso.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_modify.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
fix_momentum.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_move.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_mscg.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_msst.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
fix_mvv_dpd.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_neb.txt
corrections to fix neb doc page
2018-10-19 09:53:19 -06:00
fix_nh_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nh_uef.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
fix_nh.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nph_asphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nph_body.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nph_sphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nphug.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_npt_asphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_npt_body.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_npt_sphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nve_asphere_noforce.txt
fix a bunch of typos and broken links as detected by ebook-convert
2018-08-12 17:16:24 +02:00
fix_nve_asphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nve_awpmd.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
fix_nve_body.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nve_dot.txt
Updated link to preprint article
2018-11-06 19:44:35 +00:00
fix_nve_dotc_langevin.txt
Updated link to preprint article
2018-11-06 19:44:35 +00:00
fix_nve_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nve_limit.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_nve_line.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nve_manifold_rattle.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nve_noforce.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_nve_sphere.txt
Merge branch 'master' into granular-kokkos
2018-08-20 22:02:41 -04:00
fix_nve_spin.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nve_tri.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nve.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nvk.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nvt_asphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nvt_body.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nvt_manifold_rattle.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nvt_sllod_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_nvt_sllod.txt
fix typo
2018-09-17 05:11:59 -04:00
fix_nvt_sphere.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_oneway.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_orient.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_phonon.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_pimd.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_planeforce.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_plumed.txt
reformatting and simplification of fix plumed docs
2018-11-15 10:53:38 -05:00
fix_poems.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
fix_pour.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_precession_spin.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_press_berendsen.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_print.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_property_atom.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
fix_python_invoke.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_python_move.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_qbmsst.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_qeq_comb.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_qeq_reax.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_qeq.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_qmmm.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_qtb.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_reax_bonds.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_reaxc_species.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_recenter.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_restrain.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_rhok.txt
last round of spelling fixes
2018-08-22 22:35:35 -04:00
fix_rigid_meso.txt
first commit: added SDPD
2018-10-30 17:40:00 +03:30
fix_rigid.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
fix_rx.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_saed_vtk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_setforce.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_shake.txt
doc page clarifications
2018-09-11 11:36:37 -06:00
fix_shardlow.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_smd_adjust_dt.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_smd_integrate_tlsph.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_smd_integrate_ulsph.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_smd_move_triangulated_surface.txt
Update manual for renamed or removed files
2018-09-27 06:23:59 -04:00
fix_smd_setvel.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_smd_wall_surface.txt
Update manual for renamed or removed files
2018-09-27 06:23:59 -04:00
fix_smd.txt
interlink fixes colvars, plumed, and smd
2018-11-15 10:52:41 -05:00
fix_spring_chunk.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_spring_rg.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_spring_self.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_spring.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_srd.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_store_force.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_store_state.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_temp_berendsen.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_temp_csvr.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_temp_rescale_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_temp_rescale.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_tfmc.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_thermal_conductivity.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_ti_spring.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_tmd.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_ttm.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_tune_kspace.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_vector.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_viscosity.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_viscous.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_wall_body_polygon.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_wall_body_polyhedron.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_wall_ees.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_wall_gran_region.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_wall_gran.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
fix_wall_piston.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix_wall_reflect.txt
Merge branch 'collected-small-changes' into doc-reorg-start
2018-08-09 18:48:11 +02:00
fix_wall_region.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_wall_srd.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
fix_wall.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
fix.txt
added new commands to doc pages, fixed a few missing entries as well
2018-11-12 17:23:15 -07:00
fixes.txt
added new commands to doc pages, fixed a few missing entries as well
2018-11-12 17:23:15 -07:00
group2ndx.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
group.txt
correction to fix group property doc
2018-11-05 00:49:33 -07:00
Howto_2d.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_barostat.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Howto_bash.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_bioFF.txt
fix a couple more broken links
2018-08-09 17:13:07 +02:00
Howto_body.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Howto_chunk.txt
correct end of itemized list to be compatible with txt2rst conversion
2018-09-10 22:22:42 -04:00
Howto_client_server.txt
more tweaks to client/server doc pages
2018-09-07 14:00:39 -06:00
Howto_coreshell.txt
fix a bunch of typos and broken links as detected by ebook-convert
2018-08-12 17:16:24 +02:00
Howto_couple.txt
merge master into cslib branch, update docs
2018-08-22 11:19:55 -06:00
Howto_diffusion.txt
doc typos and push author details back to website
2018-08-17 09:15:21 -06:00
Howto_dispersion.txt
doc typos and push author details back to website
2018-08-17 09:15:21 -06:00
Howto_drude2.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_drude.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_elastic.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_github.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_granular.txt
fix a bunch of typos and broken links as detected by ebook-convert
2018-08-12 17:16:24 +02:00
Howto_kappa.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_library.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Howto_manifold.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_multiple.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
Howto_nemd.txt
fix typo
2018-09-17 05:08:22 -04:00
Howto_output.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_polarizable.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_pylammps.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
Howto_replica.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
Howto_restart.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
Howto_spc.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_spherical.txt
fix broken and inconsistent links in the manual
2018-08-22 18:45:32 -04:00
Howto_spins.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Howto_temperature.txt
doc typos and push author details back to website
2018-08-17 09:15:21 -06:00
Howto_thermostat.txt
fix typo
2018-09-17 05:09:23 -04:00
Howto_tip3p.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_tip4p.txt
fix a bunch of broken linke or make links unique across files
2018-08-09 17:13:07 +02:00
Howto_triclinic.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_viscosity.txt
fix typo
2018-09-17 05:10:56 -04:00
Howto_viz.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto_walls.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Howto.txt
merge master into cslib branch, update docs
2018-08-22 11:19:55 -06:00
hyper.txt
correct broken links in manual reported by 'make html'
2018-11-12 21:33:37 -05:00
if.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
improper_class2.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_coeff.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
improper_cossq.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_cvff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_distance.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_fourier.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_harmonic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_hybrid.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_inversion_harmonic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_none.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
improper_ring.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_style.txt
updates some one-line style defs
2018-10-19 09:53:19 -06:00
improper_umbrella.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
improper_zero.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
impropers.txt
include added docpages in toctrees for sphinx
2018-02-01 18:50:25 +01:00
include.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
info.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Install_git.txt
fix a bunch more broken, duplicate links and misformatted text
2018-08-09 19:46:25 +02:00
Install_linux.txt
update description of RPM based LAMMPS packages with info from @junghans
2018-09-28 15:47:56 +02:00
Install_mac.txt
fix broken links in manual
2018-10-21 18:39:25 -04:00
Install_patch.txt
fix one more broken link
2018-08-22 21:48:42 -04:00
Install_svn.txt
fix a bunch more broken, duplicate links and misformatted text
2018-08-09 19:46:25 +02:00
Install_tarball.txt
small doc page changes, format and content on doc page tarballs
2018-09-07 09:56:03 -06:00
Install_windows.txt
changes to replace Section_start.txt
2018-08-09 10:19:10 -06:00
Install.txt
more changes to doc pages and CMakeLists.txt
2018-08-14 15:44:25 -06:00
Intro_authors.txt
mis-spelled word
2018-08-20 13:36:44 -06:00
Intro_features.txt
fix a bunch of broken linke or make links unique across files
2018-08-09 17:13:07 +02:00
Intro_nonfeatures.txt
one more tweak
2018-08-15 07:45:52 -06:00
Intro_opensource.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Intro_overview.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Intro_website.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Intro.txt
more changes to doc pages and CMakeLists.txt
2018-08-14 15:44:25 -06:00
jump.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
kspace_modify.txt
various fixes for the manual to address breakage from merging MESSAGE and USER-SCAFACOS packages
2018-09-06 22:28:20 -04:00
kspace_style.txt
various fixes for the manual to address breakage from merging MESSAGE and USER-SCAFACOS packages
2018-09-06 22:28:20 -04:00
label.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
lammps_commands_angle.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands_atc.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands_bond.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands_compute.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands_dihedral.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands_fix.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands_improper.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands_kspace.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands_pair.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps_commands.txt
refactor headline levels to result in a more structured PDF manual
2018-03-20 15:42:13 -04:00
lammps.book
added new commands to doc pages, fixed a few missing entries as well
2018-11-12 17:23:15 -07:00
lattice.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
log.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
Manual_build.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Manual_version.txt
Move Manual_version to Intro
2018-08-09 14:53:40 -04:00
Manual.txt
patch 9Nov2018
2018-11-08 16:48:43 -05:00
mass.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
message.txt
fix broken links in manual
2018-10-21 18:39:25 -04:00
min_modify.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
min_style.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
minimize.txt
doc page clarifications
2018-09-11 11:36:37 -06:00
Modify_atom.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_body.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_bond.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_command.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_compute.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_contribute.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
Modify_dump.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_fix.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_kspace.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_min.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_overview.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Modify_pair.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_region.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_thermo.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify_variable.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Modify.txt
tweaks to Manual formatting
2018-08-15 16:27:39 -06:00
molecule.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
neb.txt
last round of spelling fixes
2018-08-22 22:35:35 -04:00
neigh_modify.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
neighbor.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
newton.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
next.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
package.txt
use Hyper-Threading consistently
2018-08-22 21:54:41 -04:00
Packages_details.txt
correct some links
2018-11-15 10:52:03 -05:00
Packages_standard.txt
re-merge with current master
2018-08-24 09:57:08 -06:00
Packages_user.txt
Merge pull request #1204 from lammps/doc-plumed
2018-11-15 13:48:58 -05:00
Packages.txt
more changes to doc pages and CMakeLists.txt
2018-08-14 15:44:25 -06:00
pair_adp.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_agni.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_airebo.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_atm.txt
resolution of cutoff issues
2018-08-24 09:36:39 -06:00
pair_awpmd.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pair_beck.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_body_nparticle.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
pair_body_rounded_polygon.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_body_rounded_polyhedron.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_bop.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_born.txt
updating files that have lists of command styles
2018-10-19 09:53:18 -06:00
pair_brownian.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_buck6d_coul_gauss.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
pair_buck_long.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_buck.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_charmm.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_class2.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_coeff.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
pair_colloid.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_comb.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_coul_diel.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_coul_shield.txt
update formatting
2018-09-24 10:37:52 -04:00
pair_coul.txt
updating files that have lists of command styles
2018-10-19 09:53:18 -06:00
pair_cs.txt
more changes augmenting lists with USER styles and to core/shell doc pages
2018-10-19 09:53:18 -06:00
pair_dipole.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_dpd_fdt.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_dpd.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_dsmc.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
pair_eam.txt
document eam/cd/old
2018-09-28 13:44:42 +02:00
pair_edip.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_eff.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_eim.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_exp6_rx.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_extep.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pair_gauss.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_gayberne.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_gran.txt
Merge branch 'master' of github.com:lammps/lammps into granular-kokkos
2018-10-10 10:43:54 -06:00
pair_gromacs.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_gw.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_hbond_dreiding.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_hybrid.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_ilp_graphene_hbn.txt
update formatting
2018-09-24 10:37:52 -04:00
pair_kim.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_kolmogorov_crespi_full.txt
update formatting
2018-09-24 10:37:52 -04:00
pair_kolmogorov_crespi_z.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
pair_lcbop.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_line_lj.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_list.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_lj96.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_lj_cubic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_lj_expand.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_lj_long.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_lj_smooth_linear.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_lj_smooth.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_lj_soft.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_lj.txt
updating files that have lists of command styles
2018-10-19 09:53:18 -06:00
pair_lubricate.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_lubricateU.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_mdf.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_meam_spline.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
pair_meam_sw_spline.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_meam.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_meso.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_mgpt.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_mie.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pair_modify.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pair_momb.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_morse.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_multi_lucy_rx.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_multi_lucy.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_nb3b_harmonic.txt
remove references to USER-OMP version of pair style nb3b/harmonic
2018-09-27 07:44:54 -04:00
pair_nm.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_none.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pair_oxdna2.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_oxdna.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_peri.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_polymorphic.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_python.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
pair_quip.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_reax.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pair_reaxc.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_resquared.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_sdk.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
pair_sdpd_taitwater_isothermal.txt
replace non-ASCII characters
2018-11-06 22:21:19 -05:00
pair_smd_hertz.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_smd_tlsph.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_smd_triangulated_surface.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_smd_ulsph.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_smtbq.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_snap.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_soft.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_sph_heatconduction.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_sph_idealgas.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_sph_lj.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_sph_rhosum.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_sph_taitwater_morris.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_sph_taitwater.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_spin_dmi.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_spin_exchange.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_spin_magelec.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
pair_spin_neel.txt
jive src headers with doc page entries and example scripts
2018-09-25 10:50:43 -06:00
pair_srp.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pair_style.txt
first commit: added SDPD
2018-10-30 17:40:00 +03:30
pair_sw.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_table_rx.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_table.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_tersoff_mod.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_tersoff_zbl.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_tersoff.txt
more mis-matches between doc pages and src files
2018-09-25 13:18:54 -06:00
pair_thole.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_tri_lj.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_ufm.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_vashishta.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_write.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pair_yukawa_colloid.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_yukawa.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_zbl.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
pair_zero.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
pairs.txt
first commit: added SDPD
2018-10-30 17:40:00 +03:30
partition.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
prd.txt
new hyper examples
2018-11-12 12:32:53 -07:00
print.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
processors.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
Python_call.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Python_examples.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
Python_head.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Python_install.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
Python_library.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Python_mpi.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
Python_overview.txt
changes to Errors and Python doc pages
2018-07-25 14:10:00 -06:00
Python_pylammps.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
Python_run.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
Python_shlib.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
Python_test.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
python.txt
change Python.txt to Python_head.txt, adapt GPU package syntax
2018-08-15 07:31:31 -06:00
quit.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
read_data.txt
atomID -> atom-ID
2018-08-22 22:28:53 -04:00
read_dump.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
read_restart.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
region.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
replicate.txt
subdomain -> sub-domain
2018-08-22 21:50:56 -04:00
rerun.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
reset_ids.txt
fix some speelink ehrrors
2018-08-22 20:35:35 -04:00
reset_timestep.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
restart.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Run_basics.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Run_head.txt
Actually rename the file
2018-08-17 10:34:17 -04:00
Run_options.txt
added -restart2dump command-line option
2018-10-18 14:24:48 -06:00
Run_output.txt
Fixes issue #1058
2018-08-17 10:13:19 -04:00
run_style.txt
fix some speelink ehrrors
2018-08-22 20:35:35 -04:00
Run_windows.txt
even more broken links detected by ePUB to MOBI conversion
2018-08-22 19:41:44 -04:00
run.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
server_mc.txt
more tweaks to client/server doc pages
2018-09-07 14:00:39 -06:00
server_md.txt
more tweaks to client/server doc pages
2018-09-07 14:00:39 -06:00
server.txt
more doc page updates
2018-08-22 11:42:41 -06:00
set.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
shell.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
special_bonds.txt
remove listing of extinct special_bonds 'extra' keyword
2018-10-04 21:30:34 -06:00
Speed_bench.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Speed_compare.txt
some rewrite/update of the accelerator comparison page removing outdated info
2018-08-16 23:47:00 -04:00
Speed_gpu.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Speed_intel.txt
Adding full hybrid support to USER-INTEL package and fixing bug with EAM parameter initialization.
2018-10-11 05:12:00 -07:00
Speed_kokkos.txt
Merge pull request #1051 from stanmoore1/data_dup
2018-09-05 17:09:09 -06:00
Speed_measure.txt
recompile/recompute/reinit -> re-compile/re-compute/re-init
2018-08-22 22:18:16 -04:00
Speed_omp.txt
fix a bunch more spelling errors
2018-08-22 21:30:21 -04:00
Speed_opt.txt
more changes to doc pages and CMakeLists.txt
2018-08-14 15:44:25 -06:00
Speed_packages.txt
fix broken and inconsistent links in the manual
2018-08-22 18:45:32 -04:00
Speed_tips.txt
more updates to Build doc page
2018-08-10 15:04:33 -06:00
Speed.txt
Undo change, would create inconsistent tocs
2018-08-16 12:39:48 -04:00
suffix.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
tad.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
temper_grem.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
temper_npt.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
temper.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
thermo_modify.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
thermo_style.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
thermo.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
timer.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
timestep.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
Tools.txt
Modify Howto and Tools
2018-08-20 01:50:16 -04:00
uncompute.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
undump.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
unfix.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
units.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
variable.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
velocity.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
write_coeff.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
write_data.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00
write_dump.txt
more changes to ATM source and doc file
2018-08-06 20:49:05 +01:00
write_restart.txt
more changes induced by removing Section_start.txt
2018-08-09 10:20:02 -06:00