Files
lammps/lib/colvars/colvarproxy_tcl.cpp
Giacomo Fiorin 377c652a83 Update Colvars library to version 2023-05-01
This update consists exclusively of bugfixes or maintenance-related changes.

The following is a list of pull requests in the Colvars repository since the previous update to LAMMPS:

- 532 Add XYZ trajectory reading feature
  https://github.com/Colvars/colvars/pull/532 (@jhenin, @giacomofiorin)

- 531 Delete objects quietly, unless explicitly requested via script (including VMD)
  https://github.com/Colvars/colvars/pull/531 (@giacomofiorin)

- 530 Append newline to log and error messages if not already present
  https://github.com/Colvars/colvars/pull/530 (@giacomofiorin)

- 528 Forward-declare OpenMP lock
  https://github.com/Colvars/colvars/pull/528 (@giacomofiorin)

- 527 Remove unneeded STL container
  https://github.com/Colvars/colvars/pull/527 (@giacomofiorin)

- 526 Allow collecting configuration files and strings before setting up interface
  https://github.com/Colvars/colvars/pull/526 (@giacomofiorin, @jhenin)

- 523 Fallback to linearCombination when customFunction is missing in customColvar
  https://github.com/Colvars/colvars/pull/523 (@HanatoK, @giacomofiorin)

- 522 Use iostream::fail() to check for I/O error
  https://github.com/Colvars/colvars/pull/522 (@jhenin)

- 520 Fix ref count
  https://github.com/Colvars/colvars/pull/520 (@giacomofiorin)

- 513 Set target temperature through a common code path
  https://github.com/Colvars/colvars/pull/513 (@giacomofiorin, @jhenin)

- 509 Safer detection of Windows with recent Microsoft Visual Studio versions
  https://github.com/Colvars/colvars/pull/509 (@akohlmey)

- 508 Update LAMMPS patching method to reflect Lepton availability
  https://github.com/Colvars/colvars/pull/508 (@giacomofiorin)

- 497 Increase the precision of write_multicol
  https://github.com/Colvars/colvars/pull/497 (@HanatoK)

- 496 Only perform MTS automatic enable/disable for timeStepFactor > 1
  https://github.com/Colvars/colvars/pull/496 (@giacomofiorin)

- 493 Remove unused branch of quaternion input function
  https://github.com/Colvars/colvars/pull/493 (@giacomofiorin)

- 489 Ensure there are spaces between the fields in the header
  https://github.com/Colvars/colvars/pull/489 (@HanatoK)

- 487 Use map of output streams, and return references to its elements
  https://github.com/Colvars/colvars/pull/487 (@giacomofiorin, @jhenin)

- 486 Remember first step of moving restraint
  https://github.com/Colvars/colvars/pull/486 (@jhenin)

- 485 Add decoupling option for moving restraints
  https://github.com/Colvars/colvars/pull/485 (@jhenin)

- 483 Update Lepton via patching procedure
  https://github.com/Colvars/colvars/pull/483 (@giacomofiorin)

- 481 Make file-reading operations of input data abstractable
  https://github.com/Colvars/colvars/pull/481 (@giacomofiorin)

Authors: @akohlmey, @giacomofiorin, @HanatoK, @jhenin
2023-05-17 13:29:00 -04:00

226 lines
6.1 KiB
C++

// -*- c++ -*-
// This file is part of the Collective Variables module (Colvars).
// The original version of Colvars and its updates are located at:
// https://github.com/Colvars/colvars
// Please update all Colvars source files before making any changes.
// If you wish to distribute your changes, please submit them to the
// Colvars repository at GitHub.
#include <sstream>
#include <iostream>
#include "colvarmodule.h"
#include "colvarproxy.h"
#include "colvarproxy_tcl.h"
#include "colvaratoms.h"
#ifdef COLVARS_TCL
#include <tcl.h>
#endif
colvarproxy_tcl::colvarproxy_tcl()
{
tcl_interp_ = NULL;
}
colvarproxy_tcl::~colvarproxy_tcl()
{
}
void colvarproxy_tcl::init_tcl_pointers()
{
// This is overloaded by NAMD and VMD proxies to use the local interpreters
#if defined(COLVARS_TCL)
if (tcl_interp_ == NULL) {
// Allocate a dedicated Tcl interpreter for Colvars
std::cout << "colvars: Allocating Tcl interpreter." << std::endl;
set_tcl_interp(Tcl_CreateInterp());
} else {
std::cerr << "Error: init_tcl_pointers called with non-NULL tcl_interp_" << std::endl;
}
#else
std::cerr << "Error: Tcl support is not available in this build." << std::endl;
#endif
}
char const *colvarproxy_tcl::tcl_get_str(void *obj)
{
#if defined(COLVARS_TCL)
return Tcl_GetString(reinterpret_cast<Tcl_Obj *>(obj));
#else
(void) obj;
return NULL;
#endif
}
int colvarproxy_tcl::tcl_run_script(std::string const &script)
{
#if defined(COLVARS_TCL)
Tcl_Interp *const interp = get_tcl_interp();
int err = Tcl_Eval(interp, script.c_str());
if (err != TCL_OK) {
cvm::log("Error while executing Tcl script:\n");
cvm::error(Tcl_GetStringResult(interp));
return COLVARS_ERROR;
}
return cvm::get_error();
#else
return COLVARS_NOT_IMPLEMENTED;
#endif
}
int colvarproxy_tcl::tcl_run_file(std::string const &fileName)
{
#if defined(COLVARS_TCL)
Tcl_Interp *const interp = get_tcl_interp();
int err = Tcl_EvalFile(interp, fileName.c_str());
if (err != TCL_OK) {
cvm::log("Error while executing Tcl script file" + fileName + ":\n");
cvm::error(Tcl_GetStringResult(interp));
return COLVARS_ERROR;
}
return cvm::get_error();
#else
return COLVARS_NOT_IMPLEMENTED;
#endif
}
int colvarproxy_tcl::tcl_run_force_callback()
{
#if defined(COLVARS_TCL)
Tcl_Interp *const interp = get_tcl_interp();
if (Tcl_FindCommand(interp, "calc_colvar_forces", NULL, 0) == NULL) {
cvm::error("Error: Colvars force procedure calc_colvar_forces is not defined.\n");
return COLVARS_ERROR;
}
std::string cmd = std::string("calc_colvar_forces ")
+ cvm::to_str(cvm::step_absolute());
int err = Tcl_Eval(interp, cmd.c_str());
if (err != TCL_OK) {
cvm::log("Error while executing calc_colvar_forces:\n");
cvm::error(Tcl_GetStringResult(interp));
return COLVARS_ERROR;
}
return cvm::get_error();
#else
return COLVARS_NOT_IMPLEMENTED;
#endif
}
int colvarproxy_tcl::tcl_run_colvar_callback(
std::string const &name,
std::vector<const colvarvalue *> const &cvc_values,
colvarvalue &value)
{
#if defined(COLVARS_TCL)
Tcl_Interp *const interp = get_tcl_interp();
size_t i;
std::string cmd = std::string("calc_") + name;
if (Tcl_FindCommand(interp, cmd.c_str(), NULL, 0) == NULL) {
cvm::error("Error: scripted colvar procedure \"" + cmd + "\" is not defined.\n");
return COLVARS_ERROR;
}
for (i = 0; i < cvc_values.size(); i++) {
cmd += std::string(" {") + (*(cvc_values[i])).to_simple_string() +
std::string("}");
}
int err = Tcl_Eval(interp, cmd.c_str());
const char *result = Tcl_GetStringResult(interp);
if (err != TCL_OK) {
return cvm::error(std::string("Error while executing ")
+ cmd + std::string(":\n") +
std::string(Tcl_GetStringResult(interp)),
COLVARS_ERROR);
}
std::istringstream is(result);
if (value.from_simple_string(is.str()) != COLVARS_OK) {
cvm::log("Error parsing colvar value from script:");
cvm::error(result);
return COLVARS_ERROR;
}
return cvm::get_error();
#else
(void) name;
(void) cvc_values;
(void) value;
return COLVARS_NOT_IMPLEMENTED;
#endif
}
int colvarproxy_tcl::tcl_run_colvar_gradient_callback(
std::string const &name,
std::vector<const colvarvalue *> const &cvc_values,
std::vector<cvm::matrix2d<cvm::real> > &gradient)
{
#if defined(COLVARS_TCL)
Tcl_Interp *const interp = get_tcl_interp();
size_t i;
std::string cmd = std::string("calc_") + name + "_gradient";
if (Tcl_FindCommand(interp, cmd.c_str(), NULL, 0) == NULL) {
cvm::error("Error: scripted colvar gradient procedure \"" + cmd + "\" is not defined.\n");
return COLVARS_ERROR;
}
for (i = 0; i < cvc_values.size(); i++) {
cmd += std::string(" {") + (*(cvc_values[i])).to_simple_string() +
std::string("}");
}
int err = Tcl_Eval(interp, cmd.c_str());
if (err != TCL_OK) {
return cvm::error(std::string("Error while executing ")
+ cmd + std::string(":\n") +
std::string(Tcl_GetStringResult(interp)),
COLVARS_ERROR);
}
Tcl_Obj **list;
int n;
Tcl_ListObjGetElements(interp, Tcl_GetObjResult(interp),
&n, &list);
if (n != int(gradient.size())) {
cvm::error("Error parsing list of gradient values from script: found "
+ cvm::to_str(n) + " values instead of " +
cvm::to_str(gradient.size()));
return COLVARS_ERROR;
}
for (i = 0; i < gradient.size(); i++) {
std::istringstream is(Tcl_GetString(list[i]));
if (gradient[i].from_simple_string(is.str()) != COLVARS_OK) {
cvm::log("Gradient matrix size: " + cvm::to_str(gradient[i].size()));
cvm::log("Gradient string: " + cvm::to_str(Tcl_GetString(list[i])));
cvm::error("Error parsing gradient value from script", COLVARS_ERROR);
return COLVARS_ERROR;
}
}
return cvm::get_error();
#else
(void) name;
(void) cvc_values;
(void) gradient;
return COLVARS_NOT_IMPLEMENTED;
#endif
}