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lammps/lib/colvars/Makefile.deps
Giacomo Fiorin 3e89b270fd Update Colvars to version 2017-10-11 
Notable features are the umbrella-integration based free energy estimator for
eABF, and the traditional thermodynamic integration estimator now available
for umbrella sampling, SMD, metadynamics.  Also included are several small fixes.

Below is a list of relevant commits in the Colvars repository since the last update.

321d06a 2017-10-10 Add macros to manage colvarscript commands [Giacomo Fiorin]
26c3bec 2017-10-09 Document coming availability of Lepton in LAMMPS [Giacomo Fiorin]
cc8f249 2017-10-04 Clarify that SMP depends on code build [Giacomo Fiorin]
0b2ffac 2017-10-04 Summarize colvar definition options, clarify some details [Giacomo Fiorin]
28002e0 2017-10-01 Separate writing of restart file from other output (e.g. PMFs) [Giacomo Fiorin]
92f7c1d 2017-10-01 Deprecate colvarsTrajAppend [Giacomo Fiorin]
12a707f 2017-09-26 Accurate Jacobian calculation for RMSD variants [Jérôme Hénin]
fe389c9 2017-09-21 Allow subtractAppliedForce with extended-L again [Jérôme Hénin]
c050ce0 2017-09-18 Silence compiler warnings, remove Tabs [Giacomo Fiorin]
cb41905 2017-01-11 Add base class for TI estimator in other biases than ABF [Giacomo Fiorin]
a1bc676 2017-09-14 Avoid writing to unopened traj file [Jérôme Hénin]
b58d8cd 2017-09-08 Function to check for overlapping groups [Jérôme Hénin]
1e5efec 2017-09-07 Check for overlapping groups in coordNum [Jérôme Hénin]
03a61a4 2017-04-06 Add UI-based estimator [fhh2626]
ae43754 2017-08-17 Fix outputCenters parsing [Josh Vermaas]
1619e0e 2017-08-14 Delete static feature arrays in cvm destructor [Jérôme Hénin]
2017-10-13 13:45:10 -04:00

238 lines
12 KiB
Makefile
Raw Blame History

$(COLVARS_OBJ_DIR)colvaratoms.o: colvaratoms.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
colvarparse.h colvaratoms.h colvardeps.h
$(COLVARS_OBJ_DIR)colvarbias_abf.o: colvarbias_abf.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h colvar.h \
colvarparse.h colvardeps.h lepton/include/Lepton.h \
lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarbias_abf.h colvarbias.h colvargrid.h colvar_UIestimator.h
$(COLVARS_OBJ_DIR)colvarbias_alb.o: colvarbias_alb.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
colvarbias_alb.h colvar.h colvarparse.h colvardeps.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarbias.h
$(COLVARS_OBJ_DIR)colvarbias.o: colvarbias.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h colvarbias.h \
colvar.h colvarparse.h colvardeps.h lepton/include/Lepton.h \
lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvargrid.h
$(COLVARS_OBJ_DIR)colvarbias_histogram.o: colvarbias_histogram.cpp \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvar.h colvarparse.h colvardeps.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarbias_histogram.h colvarbias.h colvargrid.h
$(COLVARS_OBJ_DIR)colvarbias_meta.o: colvarbias_meta.cpp colvar.h \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvarparse.h colvardeps.h lepton/include/Lepton.h \
lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarbias_meta.h colvarbias.h colvargrid.h
$(COLVARS_OBJ_DIR)colvarbias_restraint.o: colvarbias_restraint.cpp \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvarbias_restraint.h colvarbias.h colvar.h colvarparse.h \
colvardeps.h lepton/include/Lepton.h \
lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h
$(COLVARS_OBJ_DIR)colvarcomp_angles.o: colvarcomp_angles.cpp \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvar.h colvarparse.h colvardeps.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarcomp.h colvaratoms.h
$(COLVARS_OBJ_DIR)colvarcomp_coordnums.o: colvarcomp_coordnums.cpp \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvarparse.h colvaratoms.h colvardeps.h colvar.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarcomp.h
$(COLVARS_OBJ_DIR)colvarcomp.o: colvarcomp.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h colvar.h \
colvarparse.h colvardeps.h lepton/include/Lepton.h \
lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarcomp.h colvaratoms.h
$(COLVARS_OBJ_DIR)colvarcomp_distances.o: colvarcomp_distances.cpp \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvarparse.h colvar.h colvardeps.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarcomp.h colvaratoms.h
$(COLVARS_OBJ_DIR)colvarcomp_protein.o: colvarcomp_protein.cpp \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvarparse.h colvar.h colvardeps.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarcomp.h colvaratoms.h
$(COLVARS_OBJ_DIR)colvarcomp_rotations.o: colvarcomp_rotations.cpp \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvarparse.h colvar.h colvardeps.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarcomp.h colvaratoms.h
$(COLVARS_OBJ_DIR)colvar.o: colvar.cpp colvarmodule.h colvars_version.h \
colvartypes.h colvarproxy.h colvarvalue.h colvarparse.h colvar.h \
colvardeps.h lepton/include/Lepton.h \
lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarcomp.h colvaratoms.h colvarscript.h colvarbias.h
$(COLVARS_OBJ_DIR)colvardeps.o: colvardeps.cpp colvardeps.h \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvarparse.h
$(COLVARS_OBJ_DIR)colvargrid.o: colvargrid.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
colvarparse.h colvar.h colvardeps.h lepton/include/Lepton.h \
lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarcomp.h colvaratoms.h colvargrid.h
$(COLVARS_OBJ_DIR)colvarmodule.o: colvarmodule.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
colvarparse.h colvar.h colvardeps.h lepton/include/Lepton.h \
lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvarbias.h colvarbias_abf.h colvargrid.h colvar_UIestimator.h \
colvarbias_alb.h colvarbias_histogram.h colvarbias_meta.h \
colvarbias_restraint.h colvarscript.h colvaratoms.h colvarcomp.h
$(COLVARS_OBJ_DIR)colvarparse.o: colvarparse.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
colvarparse.h
$(COLVARS_OBJ_DIR)colvarproxy.o: colvarproxy.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
colvarscript.h colvarbias.h colvar.h colvarparse.h colvardeps.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
colvaratoms.h
$(COLVARS_OBJ_DIR)colvarscript.o: colvarscript.cpp colvarscript.h \
colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
colvarvalue.h colvarbias.h colvar.h colvarparse.h colvardeps.h \
lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/windowsIncludes.h \
lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/ExpressionProgram.h \
lepton/include/lepton/ExpressionTreeNode.h \
lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
lepton/include/lepton/Exception.h \
lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h
$(COLVARS_OBJ_DIR)colvartypes.o: colvartypes.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
colvarparse.h
$(COLVARS_OBJ_DIR)colvarvalue.o: colvarvalue.cpp colvarmodule.h \
colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h
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