This example contains a (crude and somewhat simple) example of
the translocation of a (rather short) polymer through a hole in a wall,
surrounded by an explicit LJ solvent.
(I used a short polymer because a longer polymer would require a larger box.
But this example looked more impressive visually when I used a smaller box.)
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Note: You must compile LAMMPS with the optional "RIGID" package installed. To
do this, go to the "src" directory of your lammps installation and type:
make yes-RIGID
make clean-all
make NAME_OF_TARGET #<--("make ubuntu", "make g++", "make linux".)
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Instructions on how to build LAMMPS input files and
run a short simulation are provided in other README files.
step 1)
README_setup.sh
step2)
README_run.sh
