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lammps/examples/SPIN/test_problems/validation_damped_precession/llg_precession.py
julient31 a0c51b40b9 Commit2 JT 111919
- renaming validation directory
2019-11-19 12:54:30 -07:00

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Python
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#!/usr/bin/env python3
import numpy as np , pylab, tkinter
import math
import matplotlib.pyplot as plt
import mpmath as mp
mub=5.78901e-5 # Bohr magneton (eV/T)
hbar=0.658212 # Planck's constant (eV.fs/rad)
g=2.0 # Lande factor (adim)
gyro=g*mub/hbar # gyromag ratio (rad/fs/T)
alpha=0.01 # damping coefficient
pi=math.pi
Bnrm=10.0 # mag. field (T)
Bext = np.array([0.0, 0.0, 1.0])
Sn = 2.0 # spin norm (in # of muB)
S = np.array([1.0, 0.0, 0.0])
N=500000 # number of timesteps
dt=0.1 # timestep (fs)
# Rodrigues rotation formula
def rotation_matrix(axis, theta):
"""
Return the rotation matrix associated with counterclockwise
rotation about the given axis by theta radians
"""
axis = np.asarray(axis)
a = math.cos(theta / 2.0)
b, c, d = -axis * math.sin(theta / 2.0)
aa, bb, cc, dd = a * a, b * b, c * c, d * d
bc, ad, ac, ab, bd, cd = b * c, a * d, a * c, a * b, b * d, c * d
return np.array([[aa + bb - cc - dd, 2 * (bc + ad), 2 * (bd - ac)],
[2 * (bc - ad), aa + cc - bb - dd, 2 * (cd + ab)],
[2 * (bd + ac), 2 * (cd - ab), aa + dd - bb - cc]])
# calc. precession field
def calc_rot_vector(Fi,Sp):
rot = gyro*Sn*Bnrm*(Fi-alpha*np.cross(Fi,Sp))
return rot
# np.set_printoptions(precision=4)
for t in range (0,N):
wf = calc_rot_vector(Bext,S)
theta=dt*np.linalg.norm(wf)
axis=wf/np.linalg.norm(wf)
S = np.dot(rotation_matrix(axis, theta), S)
en = -hbar*gyro*Sn*Bnrm*np.dot(S,Bext)
# print res. in ps for comparison with LAMMPS
print(t*dt/1000.0,S[0],S[1],S[2],en)