git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
54 lines
1.1 KiB
Plaintext
54 lines
1.1 KiB
Plaintext
variable sname index Li-dendritic
|
|
log ${sname}.min.log
|
|
|
|
units electron
|
|
newton on
|
|
boundary p p p
|
|
|
|
atom_style electron
|
|
|
|
read_data data.${sname}
|
|
#read_restart ${sname}.min.restart
|
|
|
|
pair_style eff/cut 50.112
|
|
pair_coeff * *
|
|
|
|
comm_modify vel yes
|
|
|
|
compute effTemp all temp/eff
|
|
compute effPress all pressure effTemp
|
|
|
|
thermo 10
|
|
thermo_style custom step pe temp press
|
|
thermo_modify temp effTemp press effPress
|
|
|
|
print "Starting minimizer"
|
|
min_style cg
|
|
|
|
compute 1 all property/atom spin eradius
|
|
#dump 1 all custom 100 ${sname}.min.lammpstrj id type x y z q c_1[1] c_1[2]
|
|
#dump 2 all xyz 100 ${sname}.min.xyz
|
|
min_modify line quadratic dmax 0.05
|
|
minimize 0 1.0e-7 1000 2000
|
|
|
|
write_restart ${sname}.min.restart
|
|
|
|
#undump 1
|
|
#undump 2
|
|
|
|
# NVT
|
|
reset_timestep 0
|
|
timestep 0.005
|
|
|
|
print "Starting nvt"
|
|
fix 1 all nvt/eff temp 300.0 300.0 0.1
|
|
dump 1 all custom 100 ${sname}.nvt.lammpstrj id type x y z c_1[1] c_1[2]
|
|
dump 2 all xyz 100 ${sname}.nvt.xyz
|
|
restart 100 ${sname}.nvt.restart1 ${sname}.nvt.restart2
|
|
|
|
run 10000
|
|
|
|
undump 1
|
|
undump 2
|
|
|