72 lines
2.0 KiB
Plaintext
72 lines
2.0 KiB
Plaintext
LAMMPS (7 Jan 2012)
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using 4 OpenMP thread(s) per MPI task
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package gpu force 0 0 0.8
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variable x index 1
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variable y index 1
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variable z index 1
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variable xx equal 10*$x
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variable xx equal 10*1
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variable yy equal 10*$y
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variable yy equal 10*1
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variable zz equal 10*$z
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variable zz equal 10*1
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units lj
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atom_style atomic
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newton off
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lattice fcc 0.8442
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Lattice spacing in x,y,z = 1.6796 1.6796 1.6796
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region box block 0 ${xx} 0 ${yy} 0 ${zz}
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region box block 0 10 0 ${yy} 0 ${zz}
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region box block 0 10 0 10 0 ${zz}
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region box block 0 10 0 10 0 10
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create_box 1 box
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Created orthogonal box = (0 0 0) to (16.796 16.796 16.796)
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1 by 1 by 3 MPI processor grid
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create_atoms 1 box
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Created 4000 atoms
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mass 1 1.0
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velocity all create 1.44 87287 loop geom
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pair_style yukawa/gpu 0.2 2.5
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pair_coeff 1 1 5.0
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neighbor 0.3 bin
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neigh_modify delay 0 every 20 check no
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fix 1 all nve
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timestep 0.003
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thermo 100
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run 400
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Memory usage per processor = 4.35756 Mbytes
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Step Temp E_pair E_mol TotEng Press
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0 1.44 53.485465 0 55.644925 21.488683
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100 0.93164503 54.471331 0 55.868449 21.362927
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200 0.98437877 54.388302 0 55.864501 21.383711
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300 1.0191568 54.257907 0 55.78626 21.364241
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400 1.0064464 54.270815 0 55.780107 21.356333
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Loop time of 0.662099 on 12 procs (3 MPI x 4 OpenMP) for 400 steps with 4000 atoms
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Pair time (%) = 0.473907 (71.5764)
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Neigh time (%) = 0.1293 (19.5287)
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Comm time (%) = 0.0462833 (6.99039)
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Outpt time (%) = 0.00187 (0.282435)
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Other time (%) = 0.0107393 (1.62201)
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Nlocal: 1333.33 ave 1337 max 1327 min
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Histogram: 1 0 0 0 0 0 0 0 0 2
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Nghost: 3411.33 ave 3421 max 3394 min
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Histogram: 1 0 0 0 0 0 0 0 0 2
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Neighs: 0 ave 0 max 0 min
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Histogram: 3 0 0 0 0 0 0 0 0 0
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FullNghs: 102623 ave 102996 max 102106 min
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Histogram: 1 0 0 0 0 0 0 1 0 1
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Total # of neighbors = 307870
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Ave neighs/atom = 76.9675
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Neighbor list builds = 20
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Dangerous builds = 0
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