172 lines
5.8 KiB
ReStructuredText
172 lines
5.8 KiB
ReStructuredText
.. index:: pair_style meam/spline
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.. index:: pair_style meam/spline/omp
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pair_style meam/spline command
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==============================
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Accelerator Variants: *meam/spline/omp*
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Syntax
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""""""
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.. code-block:: LAMMPS
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pair_style meam/spline
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Examples
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""""""""
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.. code-block:: LAMMPS
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pair_style meam/spline
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pair_coeff * * Ti.meam.spline Ti
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pair_coeff * * Ti.meam.spline Ti O
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Description
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"""""""""""
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The *meam/spline* style computes pairwise interactions for metals
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using a variant of modified embedded-atom method (MEAM) potentials
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:ref:`(Lenosky) <Lenosky1>`. For a single species ("old-style") MEAM,
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the total energy E is given by
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.. math::
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E & =\sum_{i<j}\phi(r_{ij})+\sum_{i}U(n_{i}) \\
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n_{i} & =\sum_{j}\rho(r_{ij})+\sum_{\substack{j<k,\\j,k\neq i}}f(r_{ij})f(r_{ik})g[\cos(\theta_{jik})]
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where :math:`\rho_i` is the density at atom I, :math:`\theta_{jik}` is
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the angle between atoms J, I, and K centered on atom I. The five
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functions :math:`\phi, U, \rho, f,` and *g* are represented by cubic splines.
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The *meam/spline* style also supports a new style multicomponent
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modified embedded-atom method (MEAM) potential :ref:`(Zhang) <Zhang4>`, where
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the total energy E is given by
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.. math::
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E &= \sum_{i<j}\phi_{ij}(r_{ij})+\sum_{i}U_i(n_{i}) \\
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n_{i} & = \sum_{j\ne i}\rho_j(r_{ij})+\sum_{\substack{j<k,\\j,k\neq i}}f_{j}(r_{ij})f_{k}(r_{ik})g_{jk}[\cos(\theta_{jik})]
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where the five functions :math:`\phi, U, \rho, f,` and *g* depend on the
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chemistry of the atoms in the interaction. In particular, if there are
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N different chemistries, there are N different *U*, :math:`\rho`, and
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*f* functions, while there are N(N+1)/2 different :math:`\phi` and *g*
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functions. The new style multicomponent MEAM potential files are
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indicated by the second line in the file starts with "meam/spline"
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followed by the number of elements and the name of each element.
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The cutoffs and the coefficients for these spline functions are listed
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in a parameter file which is specified by the
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:doc:`pair_coeff <pair_coeff>` command. Parameter files for different
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elements are included in the "potentials" directory of the LAMMPS
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distribution and have a ".meam.spline" file suffix. All of these
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files are parameterized in terms of LAMMPS :doc:`metal units <units>`.
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Note that unlike for other potentials, cutoffs for spline-based MEAM
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potentials are not set in the pair_style or pair_coeff command; they
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are specified in the potential files themselves.
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Unlike the EAM pair style, which retrieves the atomic mass from the
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potential file, the spline-based MEAM potentials do not include mass
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information; thus you need to use the :doc:`mass <mass>` command to
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specify it.
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Only a single pair_coeff command is used with the *meam/spline* style
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which specifies a potential file with parameters for all needed
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elements. These are mapped to LAMMPS atom types by specifying N
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additional arguments after the filename in the pair_coeff command,
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where N is the number of LAMMPS atom types:
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* filename
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* N element names = mapping of spline-based MEAM elements to atom types
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See the :doc:`pair_coeff <pair_coeff>` page for alternate ways
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to specify the path for the potential file.
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As an example, imagine the Ti.meam.spline file has values for Ti (old style).
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In that case your LAMMPS simulation may only have one atom type which has
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to be mapped to the Ti element as follows:
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.. code-block:: LAMMPS
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pair_coeff * * Ti.meam.spline Ti
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The first 2 arguments must be \* \* and there may be only one element
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following or NULL. Systems where there would be multiple atom types
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assigned to the same element are **not** supported by this pair style
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due to limitations in its implementation. If a mapping value is
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specified as NULL, the mapping is not performed. This can be used when
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a *meam/spline* potential is used as part of the *hybrid* pair style.
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The NULL values are placeholders for atom types that will be used with
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other potentials.
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An example with a two component spline (new style) is TiO.meam.spline, where
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the command
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.. code-block:: LAMMPS
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pair_coeff * * TiO.meam.spline Ti O
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will map the first atom type to Ti and the second atom type to O. Note
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in this case that the species names need to match exactly with the
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names of the elements in the TiO.meam.spline file; otherwise an
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error will be raised. This behavior is different than the old style
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MEAM files.
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----------
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.. include:: accel_styles.rst
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----------
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Mixing, shift, table, tail correction, restart, rRESPA info
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"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""
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This pair style does not support the :doc:`pair_modify <pair_modify>`
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shift, table, and tail options.
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The *meam/spline* pair style does not write its information to :doc:`binary restart files <restart>`, since it is stored in an external
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potential parameter file. Thus, you need to re-specify the pair_style
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and pair_coeff commands in an input script that reads a restart file.
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The *meam/spline* pair style can only be used via the *pair* keyword of the
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:doc:`run_style respa <run_style>` command. They do not support the
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*inner*, *middle*, *outer* keywords.
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----------
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Restrictions
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""""""""""""
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This pair style requires the :doc:`newton <newton>` setting to be "on"
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for pair interactions.
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This pair style does not support mapping multiple atom types to the same element.
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This pair style is only enabled if LAMMPS was built with the MANYBODY
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package. See the :doc:`Build package <Build_package>` page for more
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info.
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Related commands
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""""""""""""""""
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:doc:`pair_coeff <pair_coeff>`, :doc:`pair_style meam <pair_meam>`
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Default
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"""""""
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none
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----------
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.. _Lenosky1:
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**(Lenosky)** Lenosky, Sadigh, Alonso, Bulatov, de la Rubia, Kim, Voter,
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Kress, Modelling Simulation Materials Science Engineering, 8, 825
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(2000).
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.. _Zhang4:
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**(Zhang)** Zhang and Trinkle, Computational Materials Science, 124, 204-210 (2016).
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