29 lines
964 B
Plaintext
29 lines
964 B
Plaintext
This directory contains example data and input files
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and utility scripts for the oxDNA coarse-grained model
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for DNA.
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/examples/duplex1:
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Input, data and log files for a DNA duplex (double-stranded DNA)
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consisiting of 5 base pairs. The duplex contains two strands with
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complementary base pairs. The topology is
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A - A - A - A - A
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T - T - T - T - T
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/examples/duplex2:
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Input, data and log files for a nicked DNA duplex (double-stranded DNA)
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consisiting of 8 base pairs. The duplex contains strands with
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complementary base pairs, but the backbone on one side is not continuous:
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two individual strands on one side form a duplex with a longer single
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strand on the other side. The topology is
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A - A - A - A - A - A - A - A
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T - T - T T - T - T - T - T
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/util:
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This directory contains a simple python setup tool which creates
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single straight or helical DNA strands, DNA duplexes or arrays of DNA
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duplexes.
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