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68b533d1b8c33a8d0ec3bb603acb0b313a54fb46
lammps/src
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Axel Kohlmeyer 68b533d1b8 correct order of functions
2020-10-22 14:59:55 -04:00
..
ASPHERE
remove dead code
2020-09-25 21:50:53 -04:00
BODY
remove dead code
2020-09-25 21:50:53 -04:00
CLASS2
remove dead code
2020-09-25 21:50:53 -04:00
COLLOID
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
COMPRESS
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
CORESHELL
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
DEPEND
…
DIPOLE
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fmt
update bundled fmtlib to version 7.0.3
2020-09-18 06:14:46 -04:00
GPU
Merge pull request #2402 from ndtrung81/gpu-dpd
2020-10-14 17:18:02 -04:00
GRANULAR
Update fix_wall_gran_region.cpp
2020-10-06 10:39:14 -04:00
KIM
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
KOKKOS
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
KSPACE
utils.h is not needed (globally included via pointer.h)
2020-10-13 15:25:46 -04:00
LATTE
fix up some comments
2020-09-14 12:05:45 -06:00
MAKE
Remove makefiles for obsolete machines and configurations or that are redundant
2020-10-14 07:54:07 -04:00
MANYBODY
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
MC
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
MESSAGE
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
MISC
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
MLIAP
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
MOLECULE
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
MPIIO
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
MSCG
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
OPT
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
PERI
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
POEMS
Merge branch 'master' into math_eigen
2020-09-15 21:37:05 -04:00
PYTHON
improve error messages for variables and python commands
2020-09-23 19:02:55 -04:00
QEQ
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
REPLICA
add missing updates for symbolic constants in Atom class
2020-09-16 23:19:10 -04:00
RIGID
Merge branch 'master' into collected-small-changes
2020-09-17 06:51:21 -04:00
SHOCK
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
SNAP
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
SPIN
fix issue spotted by compiler warning
2020-10-03 09:51:28 -04:00
SRD
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
STUBS
T2345: Walking back nullptr changes in #defines in STUBS/mpi.h
2020-09-14 12:05:45 -06:00
USER-ADIOS
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
USER-ATC
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-AWPMD
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-BOCS
silence compiler warnings
2020-09-17 10:27:06 -04:00
USER-CGDNA
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-CGSDK
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-COLVARS
Merge pull request #2356 from giacomofiorin/colvars-update
2020-09-16 23:37:02 -04:00
USER-DIFFRACTION
remove dead code
2020-10-01 18:11:08 -04:00
USER-DPD
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-DRUDE
corret strmatch() semantics and restore strcmp() in extract function
2020-09-28 13:49:38 -04:00
USER-EFF
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-FEP
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-H5MD
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-INTEL
Merge pull request #2395 from rbberger/collected-small-fixes
2020-09-30 19:23:52 -04:00
USER-LB
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-MANIFOLD
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-MEAMC
T2345: After examining comments changed by batch conversion of NULL
2020-09-14 12:05:45 -06:00
USER-MESODPD
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-MESONT
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-MGPT
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-MISC
fix link to documentation
2020-10-21 10:49:01 -04:00
USER-MOFFF
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-MOLFILE
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
USER-NETCDF
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
USER-OMP
need to check for nthreads < 1 only if OpenMP is enabled
2020-09-25 22:14:21 -04:00
USER-PHONON
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-PLUMED
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-PTM
make code valgrind clean
2020-09-21 01:55:07 -04:00
USER-QMMM
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-QTB
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-QUIP
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-REACTION
bond/react: rmsd constraint bugfix
2020-10-02 18:43:35 -04:00
USER-REAXC
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-SCAFACOS
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-SDPD
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-SMD
small tweaks: avoid overflow and add missing newline
2020-10-19 15:46:33 -04:00
USER-SMTBQ
T2345: After examining comments changed by batch conversion of NULL
2020-09-14 12:05:45 -06:00
USER-SPH
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
USER-TALLY
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
USER-UEF
avoid unneeded division
2020-09-25 22:10:51 -04:00
USER-VTK
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
USER-YAFF
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
VORONOI
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
.gitignore
include math_eigen.h, remove it from .gitignore
2020-09-16 14:12:14 -04:00
accelerator_kokkos.h
…
accelerator_omp.h
…
angle_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
angle_deprecated.h
…
angle_hybrid.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
angle_hybrid.h
…
angle_zero.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
angle_zero.h
…
angle.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
angle.h
…
atom_map.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
atom_map.h
…
atom_masks.h
…
atom_vec_atomic.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
atom_vec_atomic.h
big update
2020-08-24 16:54:16 +02:00
atom_vec_body.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
atom_vec_body.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
atom_vec_charge.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
atom_vec_charge.h
big update
2020-08-24 16:54:16 +02:00
atom_vec_ellipsoid.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
atom_vec_ellipsoid.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
atom_vec_hybrid.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
atom_vec_hybrid.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
atom_vec_line.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
atom_vec_line.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
atom_vec_sphere.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
atom_vec_sphere.h
big update
2020-08-24 16:54:16 +02:00
atom_vec_tri.cpp
Merge branch 'master' into math_eigen
2020-09-15 21:37:05 -04:00
atom_vec_tri.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
atom_vec.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
atom_vec.h
Merge branch 'master' into symbolic-atom-constants
2020-09-15 14:58:13 -04:00
atom.cpp
print warning when reading data files with non-zero image flags for non-periodic boundaries
2020-10-09 13:24:53 -04:00
atom.h
Add datatype introspection methods to library
2020-09-17 13:43:43 -04:00
balance.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
balance.h
…
body.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
body.h
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
bond_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
bond_deprecated.h
…
bond_hybrid.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
bond_hybrid.h
…
bond_zero.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
bond_zero.h
big update
2020-08-24 16:54:16 +02:00
bond.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
bond.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
change_box.cpp
fix logic error
2020-09-25 22:08:28 -04:00
change_box.h
…
citeme.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
citeme.h
…
comm_brick.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
comm_brick.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
comm_tiled.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
comm_tiled.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
comm.cpp
fix up some comments
2020-09-14 12:05:45 -06:00
comm.h
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
compute_adf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_adf.h
…
compute_aggregate_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_aggregate_atom.h
…
compute_angle_local.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
compute_angle_local.h
…
compute_angle.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_angle.h
…
compute_angmom_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_angmom_chunk.h
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compute_bond_local.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
compute_bond_local.h
…
compute_bond.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_bond.h
…
compute_centro_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_centro_atom.h
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compute_centroid_stress_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_centroid_stress_atom.h
…
compute_chunk_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_chunk_atom.h
fix up some comments
2020-09-14 12:05:45 -06:00
compute_chunk_spread_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_chunk_spread_atom.h
…
compute_cluster_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_cluster_atom.h
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compute_cna_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_cna_atom.h
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compute_com_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_com_chunk.h
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compute_com.cpp
…
compute_com.h
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compute_contact_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_contact_atom.h
…
compute_coord_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_coord_atom.h
big update
2020-08-24 16:54:16 +02:00
compute_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_deprecated.h
…
compute_dihedral_local.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
compute_dihedral_local.h
…
compute_dihedral.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_dihedral.h
…
compute_dipole_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_dipole_chunk.h
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compute_displace_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_displace_atom.h
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compute_erotate_sphere_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_erotate_sphere_atom.h
…
compute_erotate_sphere.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_erotate_sphere.h
…
compute_fragment_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_fragment_atom.h
big update
2020-08-24 16:54:16 +02:00
compute_global_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_global_atom.h
…
compute_group_group.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_group_group.h
…
compute_gyration_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_gyration_chunk.h
…
compute_gyration.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_gyration.h
…
compute_heat_flux.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_heat_flux.h
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compute_hexorder_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_hexorder_atom.h
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compute_improper_local.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
compute_improper_local.h
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compute_improper.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_improper.h
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compute_inertia_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_inertia_chunk.h
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compute_ke_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_ke_atom.h
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compute_ke.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_ke.h
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compute_msd_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_msd_chunk.h
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compute_msd.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_msd.h
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compute_omega_chunk.cpp
Merge branch 'master' into math_eigen
2020-09-15 21:37:05 -04:00
compute_omega_chunk.h
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compute_orientorder_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_orientorder_atom.h
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compute_pair_local.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_pair_local.h
…
compute_pair.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_pair.h
…
compute_pe_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_pe_atom.h
…
compute_pe.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_pe.h
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compute_pressure.cpp
fix memory leak
2020-09-25 18:13:52 -04:00
compute_pressure.h
…
compute_property_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_property_atom.h
big update
2020-08-24 16:54:16 +02:00
compute_property_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_property_chunk.h
…
compute_property_local.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
compute_property_local.h
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compute_rdf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_rdf.h
…
compute_reduce_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_reduce_chunk.h
…
compute_reduce_region.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_reduce_region.h
…
compute_reduce.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_reduce.h
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_slice.cpp
fix small memory leaks
2020-10-01 18:11:19 -04:00
compute_slice.h
…
compute_stress_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_stress_atom.h
…
compute_temp_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_temp_chunk.h
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compute_temp_com.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_temp_com.h
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compute_temp_deform.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_temp_deform.h
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compute_temp_partial.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_temp_partial.h
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compute_temp_profile.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_temp_profile.h
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compute_temp_ramp.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_temp_ramp.h
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compute_temp_region.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_temp_region.h
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compute_temp_sphere.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_temp_sphere.h
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compute_temp.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
compute_temp.h
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compute_torque_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_torque_chunk.h
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compute_vacf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_vacf.h
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compute_vcm_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute_vcm_chunk.h
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compute.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
compute.h
big update
2020-08-24 16:54:16 +02:00
create_atoms.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
create_atoms.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
create_bonds.cpp
improve error message
2020-10-11 23:17:46 -04:00
create_bonds.h
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create_box.cpp
replace calls to force->*numeric() with the corresponding utils::*numeric()
2020-08-29 20:31:02 -04:00
create_box.h
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delete_atoms.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
delete_atoms.h
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delete_bonds.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
delete_bonds.h
…
Depend.sh
big update
2020-08-24 16:54:16 +02:00
deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
deprecated.h
big update
2020-08-24 16:54:16 +02:00
dihedral_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
dihedral_deprecated.h
…
dihedral_hybrid.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
dihedral_hybrid.h
…
dihedral_zero.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
dihedral_zero.h
…
dihedral.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
dihedral.h
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displace_atoms.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
displace_atoms.h
…
domain.cpp
add missing updates for symbolic constants in Atom class
2020-09-16 23:19:10 -04:00
domain.h
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
dump_atom.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
dump_atom.h
big update
2020-08-24 16:54:16 +02:00
dump_cfg.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
dump_cfg.h
…
dump_custom.cpp
must not assume that size_one == nfield in DumpCustom since DumpVTK changes it
2020-10-13 15:28:02 -04:00
dump_custom.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
dump_dcd.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
dump_dcd.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
dump_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
dump_deprecated.h
…
dump_image.cpp
remove inactive code and documentation for dump image persp option
2020-09-28 08:19:26 -04:00
dump_image.h
remove inactive code and documentation for dump image persp option
2020-09-28 08:19:26 -04:00
dump_local.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
dump_local.h
…
dump_movie.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
dump_movie.h
…
dump_xyz.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
dump_xyz.h
…
dump.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
dump.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
error.cpp
fix up some comments
2020-09-14 12:05:45 -06:00
error.h
more include file updates
2020-09-02 21:44:04 -04:00
exceptions.h
big update
2020-08-24 16:54:16 +02:00
Fetch.sh
big update
2020-08-24 16:54:16 +02:00
file_writer.h
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
finish.cpp
add missing updates for symbolic constants in Atom class
2020-09-16 23:19:10 -04:00
finish.h
…
fix_adapt.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_adapt.h
big update
2020-08-24 16:54:16 +02:00
fix_addforce.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_addforce.h
…
fix_ave_atom.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_ave_atom.h
…
fix_ave_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_ave_chunk.h
…
fix_ave_correlate.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_ave_correlate.h
…
fix_ave_histo_weight.cpp
avoid overflow of timestep related computations
2020-10-01 09:48:54 -04:00
fix_ave_histo_weight.h
…
fix_ave_histo.cpp
avoid overflow of timestep related computations
2020-10-01 09:48:54 -04:00
fix_ave_histo.h
…
fix_ave_time.cpp
avoid overflow of timestep related computations
2020-10-01 09:48:54 -04:00
fix_ave_time.h
…
fix_aveforce.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_aveforce.h
…
fix_balance.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_balance.h
…
fix_box_relax.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_box_relax.h
…
fix_controller.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_controller.h
…
fix_deform.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_deform.h
…
fix_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_deprecated.h
…
fix_drag.cpp
more include file updates
2020-09-02 21:44:04 -04:00
fix_drag.h
…
fix_dt_reset.cpp
detect if dt has been changed from default and print warning if reset by units command
2020-09-15 10:50:44 -04:00
fix_dt_reset.h
…
fix_dummy.cpp
big update
2020-08-24 16:54:16 +02:00
fix_dummy.h
big update
2020-08-24 16:54:16 +02:00
fix_enforce2d.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_enforce2d.h
…
fix_external.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_external.h
…
fix_gravity.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_gravity.h
…
fix_group.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_group.h
…
fix_halt.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_halt.h
add diskfree check to fix halt
2020-03-09 16:23:20 -04:00
fix_heat.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_heat.h
…
fix_indent.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_indent.h
…
fix_langevin.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_langevin.h
…
fix_lineforce.cpp
more include file updates
2020-09-02 21:44:04 -04:00
fix_lineforce.h
…
fix_minimize.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_minimize.h
…
fix_momentum.cpp
more include file updates
2020-09-02 21:44:04 -04:00
fix_momentum.h
…
fix_move.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_move.h
…
fix_neigh_history.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_neigh_history.h
…
fix_nh_sphere.cpp
more include file updates
2020-09-02 21:44:04 -04:00
fix_nh_sphere.h
…
fix_nh.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_nh.h
some more IWYU tweaks
2020-09-04 09:23:20 -04:00
fix_nph_sphere.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_nph_sphere.h
…
fix_nph.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_nph.h
…
fix_npt_sphere.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_npt_sphere.h
…
fix_npt.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_npt.h
…
fix_numdiff.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_numdiff.h
Removed misleading doc information and included errors
2020-03-10 16:12:02 -06:00
fix_nve_limit.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_nve_limit.h
…
fix_nve_noforce.cpp
…
fix_nve_noforce.h
…
fix_nve_sphere.cpp
more include file updates
2020-09-02 21:44:04 -04:00
fix_nve_sphere.h
…
fix_nve.cpp
…
fix_nve.h
…
fix_nvt_sllod.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_nvt_sllod.h
…
fix_nvt_sphere.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_nvt_sphere.h
…
fix_nvt.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
fix_nvt.h
…
fix_planeforce.cpp
more include file updates
2020-09-02 21:44:04 -04:00
fix_planeforce.h
…
fix_press_berendsen.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_press_berendsen.h
…
fix_print.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_print.h
…
fix_property_atom.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_property_atom.h
…
fix_read_restart.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_read_restart.h
…
fix_recenter.cpp
more include file updates
2020-09-02 21:44:04 -04:00
fix_recenter.h
…
fix_respa.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_respa.h
…
fix_restrain.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_restrain.h
big update
2020-08-24 16:54:16 +02:00
fix_setforce.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_setforce.h
big update
2020-08-24 16:54:16 +02:00
fix_spring_chunk.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_spring_chunk.h
big update
2020-08-24 16:54:16 +02:00
fix_spring_rg.cpp
T2345: After examining comments changed by batch conversion of NULL
2020-09-14 12:05:45 -06:00
fix_spring_rg.h
big update
2020-08-24 16:54:16 +02:00
fix_spring_self.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_spring_self.h
…
fix_spring.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_spring.h
…
fix_store_force.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_store_force.h
…
fix_store_state.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_store_state.h
…
fix_store.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_store.h
…
fix_temp_berendsen.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_temp_berendsen.h
big update
2020-08-24 16:54:16 +02:00
fix_temp_csld.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_temp_csld.h
big update
2020-08-24 16:54:16 +02:00
fix_temp_csvr.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_temp_csvr.h
big update
2020-08-24 16:54:16 +02:00
fix_temp_rescale.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_temp_rescale.h
big update
2020-08-24 16:54:16 +02:00
fix_tmd.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
fix_tmd.h
…
fix_vector.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_vector.h
…
fix_viscous.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_viscous.h
…
fix_wall_harmonic.cpp
…
fix_wall_harmonic.h
…
fix_wall_lj93.cpp
…
fix_wall_lj93.h
…
fix_wall_lj126.cpp
…
fix_wall_lj126.h
…
fix_wall_lj1043.cpp
…
fix_wall_lj1043.h
…
fix_wall_morse.cpp
…
fix_wall_morse.h
…
fix_wall_reflect.cpp
more include file updates
2020-09-02 21:44:04 -04:00
fix_wall_reflect.h
…
fix_wall_region.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_wall_region.h
…
fix_wall.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix_wall.h
…
fix.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fix.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fmtlib_format.cpp
big update
2020-08-24 16:54:16 +02:00
fmtlib_os.cpp
big update
2020-08-24 16:54:16 +02:00
force.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
force.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
group.cpp
Merge branch 'master' into math_eigen
2020-09-15 21:37:05 -04:00
group.h
more include file updates
2020-09-02 21:44:04 -04:00
hashlittle.cpp
Fix typo
2020-03-14 13:57:48 +09:00
hashlittle.h
use #include <cstdint> now that we require C++11
2020-04-21 19:31:57 -04:00
image.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
image.h
…
imbalance_group.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
imbalance_group.h
big update
2020-08-24 16:54:16 +02:00
imbalance_neigh.cpp
more include file updates
2020-09-02 21:44:04 -04:00
imbalance_neigh.h
big update
2020-08-24 16:54:16 +02:00
imbalance_store.cpp
more include file updates
2020-09-02 21:44:04 -04:00
imbalance_store.h
big update
2020-08-24 16:54:16 +02:00
imbalance_time.cpp
more include file updates
2020-09-02 21:44:04 -04:00
imbalance_time.h
big update
2020-08-24 16:54:16 +02:00
imbalance_var.cpp
more include file updates
2020-09-02 21:44:04 -04:00
imbalance_var.h
big update
2020-08-24 16:54:16 +02:00
imbalance.cpp
…
imbalance.h
big update
2020-08-24 16:54:16 +02:00
improper_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
improper_deprecated.h
…
improper_hybrid.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
improper_hybrid.h
…
improper_zero.cpp
more include file updates
2020-09-02 21:44:04 -04:00
improper_zero.h
…
improper.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
improper.h
…
info.cpp
fix format
2020-10-11 23:18:03 -04:00
info.h
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
input.cpp
Avoid string duplication and remove memory leak
2020-09-25 13:44:28 -04:00
input.h
more include file updates
2020-09-02 21:44:04 -04:00
Install.sh
…
integrate.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
integrate.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
irregular.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
irregular.h
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
kspace_deprecated.cpp
more include file updates
2020-09-02 21:44:04 -04:00
kspace_deprecated.h
…
kspace.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
kspace.h
big update
2020-08-24 16:54:16 +02:00
lammps.cpp
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
lammps.h
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
lattice.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
lattice.h
big update
2020-08-24 16:54:16 +02:00
library.cpp
correct order of functions
2020-10-22 14:59:55 -04:00
library.h
correct order of functions
2020-10-22 14:59:55 -04:00
lmppython.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
lmppython.h
big update
2020-08-24 16:54:16 +02:00
lmprestart.h
big update
2020-08-24 16:54:16 +02:00
lmptype.h
Merge branch 'master' into collected-small-changes
2020-09-18 16:11:47 -04:00
lmpwindows.h
…
main.cpp
some more IWYU tweaks
2020-09-04 09:23:20 -04:00
Make.sh
big update
2020-08-24 16:54:16 +02:00
Makefile
have make yes/no package terminate with error status for non-existing packages
2020-09-21 07:09:13 -04:00
Makefile.list
big update
2020-08-24 16:54:16 +02:00
Makefile.package.empty
…
Makefile.package.settings.empty
…
Makefile.print
include options to link to the LAMMPS library in mode=print output
2020-04-08 18:36:30 -04:00
math_complex.h
…
math_const.h
…
math_eigen_impl.h
make a small change to math_eigen_impl.h
2020-10-05 22:32:15 +09:00
math_eigen.cpp
update copyright headers to match LAMMPS' conventions
2020-09-16 17:35:58 -04:00
math_eigen.h
update copyright headers to match LAMMPS' conventions
2020-09-16 17:35:58 -04:00
math_extra.cpp
updated all code in LAMMPS to use the open-source "math_eigen.h" instead of "math_extra.h". Code in "lib" now uses its own abbreviated local version of the "math_eigen.h" file (which is named "jacobi_pd.h"), since it is not clear how code from "lib/" can access the code in "src/"
2020-09-05 01:39:27 -07:00
math_extra.h
updated all code in LAMMPS to use the open-source "math_eigen.h" instead of "math_extra.h". Code in "lib" now uses its own abbreviated local version of the "math_eigen.h" file (which is named "jacobi_pd.h"), since it is not clear how code from "lib/" can access the code in "src/"
2020-09-05 01:39:27 -07:00
math_special.cpp
use #include <cstdint> now that we require C++11
2020-04-21 19:31:57 -04:00
math_special.h
…
math_vector.h
…
memory.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
memory.h
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
min_cg.cpp
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
min_cg.h
…
min_fire_old.cpp
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
min_fire_old.h
…
min_fire.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
min_fire.h
…
min_hftn.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
min_hftn.h
…
min_linesearch.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
min_linesearch.h
…
min_quickmin.cpp
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
min_quickmin.h
…
min_sd.cpp
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
min_sd.h
…
min.cpp
make certain alpha_final is initialized
2020-10-14 04:51:51 -04:00
min.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
minimize.cpp
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
minimize.h
…
modify.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
modify.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
molecule.cpp
Merge pull request #2381 from akohlmey/collected-small-changes
2020-09-24 16:17:28 -04:00
molecule.h
molecule: revert overzealous error checking
2020-09-23 11:23:10 -04:00
mpiio.h
big update
2020-08-24 16:54:16 +02:00
my_page.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
my_page.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
my_pool_chunk.cpp
fix minor issues
2020-09-08 16:43:10 -04:00
my_pool_chunk.h
fix minor issues
2020-09-08 16:43:10 -04:00
nbin_standard.cpp
…
nbin_standard.h
…
nbin.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
nbin.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
neigh_list.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
neigh_list.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
neigh_request.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
neigh_request.h
…
neighbor.cpp
add missing updates for symbolic constants in Atom class
2020-09-16 23:19:10 -04:00
neighbor.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
npair_copy.cpp
…
npair_copy.h
…
npair_full_bin_atomonly.cpp
…
npair_full_bin_atomonly.h
…
npair_full_bin_ghost.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_full_bin_ghost.h
…
npair_full_bin.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_full_bin.h
…
npair_full_multi.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_full_multi.h
…
npair_full_nsq_ghost.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_full_nsq_ghost.h
…
npair_full_nsq.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_full_nsq.h
…
npair_half_bin_atomonly_newton.cpp
…
npair_half_bin_atomonly_newton.h
…
npair_half_bin_newtoff_ghost.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_bin_newtoff_ghost.h
…
npair_half_bin_newtoff.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_bin_newtoff.h
…
npair_half_bin_newton_tri.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_bin_newton_tri.h
…
npair_half_bin_newton.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_bin_newton.h
…
npair_half_multi_newtoff.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_multi_newtoff.h
…
npair_half_multi_newton_tri.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_multi_newton_tri.h
…
npair_half_multi_newton.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_multi_newton.h
…
npair_half_nsq_newtoff_ghost.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_nsq_newtoff_ghost.h
…
npair_half_nsq_newtoff.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_nsq_newtoff.h
…
npair_half_nsq_newton.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_nsq_newton.h
…
npair_half_respa_bin_newtoff.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_respa_bin_newtoff.h
…
npair_half_respa_bin_newton_tri.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_respa_bin_newton_tri.h
…
npair_half_respa_bin_newton.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_respa_bin_newton.h
…
npair_half_respa_nsq_newtoff.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_respa_nsq_newtoff.h
…
npair_half_respa_nsq_newton.cpp
replace some numeric constants in Atom and AtomVec classes with enumerators
2020-09-11 19:07:55 -04:00
npair_half_respa_nsq_newton.h
…
npair_half_size_bin_newtoff.cpp
…
npair_half_size_bin_newtoff.h
…
npair_half_size_bin_newton_tri.cpp
…
npair_half_size_bin_newton_tri.h
…
npair_half_size_bin_newton.cpp
…
npair_half_size_bin_newton.h
…
npair_half_size_nsq_newtoff.cpp
…
npair_half_size_nsq_newtoff.h
…
npair_half_size_nsq_newton.cpp
…
npair_half_size_nsq_newton.h
…
npair_halffull_newtoff.cpp
…
npair_halffull_newtoff.h
…
npair_halffull_newton.cpp
…
npair_halffull_newton.h
…
npair_skip_respa.cpp
…
npair_skip_respa.h
…
npair_skip_size_off2on_oneside.cpp
…
npair_skip_size_off2on_oneside.h
…
npair_skip_size_off2on.cpp
…
npair_skip_size_off2on.h
…
npair_skip_size.cpp
…
npair_skip_size.h
…
npair_skip.cpp
…
npair_skip.h
…
npair.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
npair.h
…
nstencil_full_bin_2d.cpp
…
nstencil_full_bin_2d.h
…
nstencil_full_bin_3d.cpp
…
nstencil_full_bin_3d.h
…
nstencil_full_ghost_bin_2d.cpp
…
nstencil_full_ghost_bin_2d.h
…
nstencil_full_ghost_bin_3d.cpp
…
nstencil_full_ghost_bin_3d.h
…
nstencil_full_multi_2d.cpp
…
nstencil_full_multi_2d.h
…
nstencil_full_multi_3d.cpp
…
nstencil_full_multi_3d.h
…
nstencil_half_bin_2d_newtoff.cpp
…
nstencil_half_bin_2d_newtoff.h
…
nstencil_half_bin_2d_newton_tri.cpp
…
nstencil_half_bin_2d_newton_tri.h
…
nstencil_half_bin_2d_newton.cpp
…
nstencil_half_bin_2d_newton.h
…
nstencil_half_bin_3d_newtoff.cpp
…
nstencil_half_bin_3d_newtoff.h
…
nstencil_half_bin_3d_newton_tri.cpp
…
nstencil_half_bin_3d_newton_tri.h
…
nstencil_half_bin_3d_newton.cpp
…
nstencil_half_bin_3d_newton.h
…
nstencil_half_ghost_bin_2d_newtoff.cpp
…
nstencil_half_ghost_bin_2d_newtoff.h
…
nstencil_half_ghost_bin_3d_newtoff.cpp
…
nstencil_half_ghost_bin_3d_newtoff.h
…
nstencil_half_multi_2d_newtoff.cpp
…
nstencil_half_multi_2d_newtoff.h
…
nstencil_half_multi_2d_newton_tri.cpp
…
nstencil_half_multi_2d_newton_tri.h
…
nstencil_half_multi_2d_newton.cpp
…
nstencil_half_multi_2d_newton.h
…
nstencil_half_multi_3d_newtoff.cpp
…
nstencil_half_multi_3d_newtoff.h
…
nstencil_half_multi_3d_newton_tri.cpp
…
nstencil_half_multi_3d_newton_tri.h
…
nstencil_half_multi_3d_newton.cpp
…
nstencil_half_multi_3d_newton.h
…
nstencil.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
nstencil.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
ntopo_angle_all.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_angle_all.h
…
ntopo_angle_partial.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_angle_partial.h
…
ntopo_angle_template.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_angle_template.h
…
ntopo_bond_all.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_bond_all.h
…
ntopo_bond_partial.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_bond_partial.h
…
ntopo_bond_template.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_bond_template.h
…
ntopo_dihedral_all.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_dihedral_all.h
…
ntopo_dihedral_partial.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_dihedral_partial.h
…
ntopo_dihedral_template.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_dihedral_template.h
…
ntopo_improper_all.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_improper_all.h
…
ntopo_improper_partial.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_improper_partial.h
…
ntopo_improper_template.cpp
more IWYU cleanup
2020-09-02 23:49:17 -04:00
ntopo_improper_template.h
…
ntopo.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
ntopo.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
omp_compat.h
fix typo
2020-09-28 12:52:32 -04:00
output.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
output.h
fix up some comments
2020-09-14 12:05:45 -06:00
pack.h
…
Package.sh
remove tab and trailing whitespace
2020-03-27 22:25:27 -04:00
pair_beck.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_beck.h
…
pair_born_coul_dsf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_born_coul_dsf.h
…
pair_born_coul_wolf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_born_coul_wolf.h
…
pair_born.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_born.h
…
pair_buck_coul_cut.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_buck_coul_cut.h
…
pair_buck.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_buck.h
…
pair_coul_cut.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_coul_cut.h
…
pair_coul_debye.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_coul_debye.h
…
pair_coul_dsf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_coul_dsf.h
…
pair_coul_streitz.cpp
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
pair_coul_streitz.h
big update
2020-08-24 16:54:16 +02:00
pair_coul_wolf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_coul_wolf.h
…
pair_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
pair_deprecated.h
…
pair_dpd_tstat.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_dpd_tstat.h
…
pair_dpd.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_dpd.h
…
pair_gauss.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_gauss.h
…
pair_hybrid_overlay.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_hybrid_overlay.h
…
pair_hybrid.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_hybrid.h
…
pair_lj96_cut.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj96_cut.h
…
pair_lj_cubic.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_cubic.h
…
pair_lj_cut_coul_cut.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_cut_coul_cut.h
…
pair_lj_cut_coul_debye.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_cut_coul_debye.h
…
pair_lj_cut_coul_dsf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_cut_coul_dsf.h
…
pair_lj_cut_coul_wolf.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_cut_coul_wolf.h
…
pair_lj_cut.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_cut.h
…
pair_lj_expand.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_expand.h
…
pair_lj_gromacs_coul_gromacs.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_gromacs_coul_gromacs.h
…
pair_lj_gromacs.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_gromacs.h
…
pair_lj_smooth_linear.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_smooth_linear.h
…
pair_lj_smooth.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_lj_smooth.h
…
pair_mie_cut.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_mie_cut.h
…
pair_morse.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_morse.h
…
pair_soft.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_soft.h
…
pair_table.cpp
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
pair_table.h
…
pair_ufm.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_ufm.h
big update
2020-08-24 16:54:16 +02:00
pair_yukawa.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_yukawa.h
…
pair_zbl.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_zbl.h
big update
2020-08-24 16:54:16 +02:00
pair_zero.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair_zero.h
Fix typo
2020-03-14 13:57:48 +09:00
pair.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pair.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pointers.h
rephrase
2020-09-23 15:45:29 -04:00
potential_file_reader.cpp
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
potential_file_reader.h
some more second pass cleanup
2020-09-04 00:46:23 -04:00
procmap.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
procmap.h
…
Purge.list
move merge sort to utils namespace
2020-09-06 17:38:53 -04:00
random_mars.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
random_mars.h
big update
2020-08-24 16:54:16 +02:00
random_park.cpp
…
random_park.h
…
rcb.cpp
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
rcb.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
read_data.cpp
we must initialize the number of types with any "extra" values
2020-10-11 23:26:35 -04:00
read_data.h
big update
2020-08-24 16:54:16 +02:00
read_dump.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
read_dump.h
…
read_restart.cpp
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
read_restart.h
…
reader_native.cpp
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
reader_native.h
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
reader_xyz.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
reader_xyz.h
…
reader.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
reader.h
…
region_block.cpp
update include handling for commands
2020-09-03 00:51:58 -04:00
region_block.h
…
region_cone.cpp
update include handling for commands
2020-09-03 00:51:58 -04:00
region_cone.h
…
region_cylinder.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
region_cylinder.h
…
region_deprecated.cpp
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
region_deprecated.h
…
region_intersect.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
region_intersect.h
…
region_plane.cpp
update include handling for commands
2020-09-03 00:51:58 -04:00
region_plane.h
…
region_prism.cpp
update include handling for commands
2020-09-03 00:51:58 -04:00
region_prism.h
…
region_sphere.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
region_sphere.h
…
region_union.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
region_union.h
…
region.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
region.h
…
replicate.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
replicate.h
…
rerun.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
rerun.h
…
reset_atom_ids.cpp
avoid 32-bit integer overflow
2020-09-25 17:31:49 -04:00
reset_atom_ids.h
big update
2020-08-24 16:54:16 +02:00
reset_mol_ids.cpp
add missing updates for symbolic constants in Atom class
2020-09-16 23:19:10 -04:00
reset_mol_ids.h
rechecking some corefiles with IWYU after the many updates
2020-09-03 15:28:07 -04:00
respa.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
respa.h
…
run.cpp
T2345: After examining comments changed by batch conversion of NULL
2020-09-14 12:05:45 -06:00
run.h
…
set.cpp
simplify variable lookup in set command
2020-09-19 16:04:09 -04:00
set.h
simplify variable lookup in set command
2020-09-19 16:04:09 -04:00
special.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
special.h
…
suffix.h
…
table_file_reader.cpp
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
table_file_reader.h
big update
2020-08-24 16:54:16 +02:00
text_file_reader.cpp
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
text_file_reader.h
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
thermo.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
thermo.h
big update
2020-08-24 16:54:16 +02:00
timer.cpp
fix typo
2020-10-04 11:31:15 -04:00
timer.h
…
tokenizer.cpp
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
tokenizer.h
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
universe.cpp
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
universe.h
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
update.cpp
must initialize eflag_atom and vflag_atom to zero in constructor
2020-10-01 14:49:23 -04:00
update.h
Merge branch 'master' into consistent-memory-usage
2020-09-15 12:25:16 -04:00
utils.cpp
fix up some comments
2020-09-14 12:05:45 -06:00
utils.h
add some cross referencing
2020-09-18 13:45:33 -04:00
variable.cpp
allow forward slash in strings for if statements
2020-10-06 18:44:26 -04:00
variable.h
add support for variable names to id introspection in library interface
2020-10-04 06:01:26 -04:00
velocity.cpp
Merge branch 'master' into symbolic-atom-constants
2020-09-15 17:44:31 -04:00
velocity.h
…
verlet.cpp
more IWYU updates
2020-09-03 00:22:09 -04:00
verlet.h
…
version.h
update version strings for next patch release
2020-10-09 01:12:41 -04:00
write_coeff.cpp
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
write_coeff.h
…
write_data.cpp
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
write_data.h
more IWYU updates
2020-09-03 00:22:09 -04:00
write_dump.cpp
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
write_dump.h
…
write_restart.cpp
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
write_restart.h
more IWYU updates
2020-09-03 00:22:09 -04:00