Files
lammps/lib/gpu/lal_eam_ext.cpp
W. Michael Brown 75cb370d34 Moving fp array resize for EAM before the inum check to prevent
segmentation faults for subdomains with no work.

Chaning fp data copy to only be local atoms for device to host and
only be ghost atoms for host to device.
2011-12-19 16:29:47 -05:00

148 lines
5.3 KiB
C++

// **************************************************************************
// lal_eam_ext.cpp
// -------------------
// W. Michael Brown, Trung Dac Nguyen (ORNL)
//
// Class for acceleration of the eam pair style
//
// __________________________________________________________________________
// This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
// __________________________________________________________________________
//
// begin :
// email : brownw@ornl.gov nguyentd@ornl.gov
// ***************************************************************************/
#include <iostream>
#include <cassert>
#include <math.h>
#include "lal_eam.h"
using namespace std;
using namespace LAMMPS_AL;
static EAM<PRECISION,ACC_PRECISION> EAMMF;
// ---------------------------------------------------------------------------
// Allocate memory on host and device and copy constants to device
// ---------------------------------------------------------------------------
int eam_gpu_init(const int ntypes, double host_cutforcesq,
int **host_type2rhor, int **host_type2z2r, int *host_type2frho,
double ***host_rhor_spline, double ***host_z2r_spline,
double ***host_frho_spline,
double rdr, double rdrho, int nrhor,
int nrho, int nz2r, int nfrho, int nr,
const int nlocal, const int nall, const int max_nbors,
const int maxspecial, const double cell_size,
int &gpu_mode, FILE *screen, int &fp_size) {
EAMMF.clear();
gpu_mode=EAMMF.device->gpu_mode();
double gpu_split=EAMMF.device->particle_split();
int first_gpu=EAMMF.device->first_device();
int last_gpu=EAMMF.device->last_device();
int world_me=EAMMF.device->world_me();
int gpu_rank=EAMMF.device->gpu_rank();
int procs_per_gpu=EAMMF.device->procs_per_gpu();
// disable host/device split for now
if (gpu_split != 1.0)
return -8;
fp_size=sizeof(PRECISION);
EAMMF.device->init_message(screen,"eam",first_gpu,last_gpu);
bool message=false;
if (EAMMF.device->replica_me()==0 && screen)
message=true;
if (message) {
fprintf(screen,"Initializing GPU and compiling on process 0...");
fflush(screen);
}
int init_ok=0;
if (world_me==0)
init_ok=EAMMF.init(ntypes, host_cutforcesq,
host_type2rhor, host_type2z2r, host_type2frho,
host_rhor_spline, host_z2r_spline,
host_frho_spline,
rdr, rdrho, nrhor, nrho, nz2r, nfrho, nr,
nlocal, nall, 300, maxspecial,
cell_size, gpu_split, screen);
EAMMF.device->world_barrier();
if (message)
fprintf(screen,"Done.\n");
for (int i=0; i<procs_per_gpu; i++) {
if (message) {
if (last_gpu-first_gpu==0)
fprintf(screen,"Initializing GPU %d on core %d...",first_gpu,i);
else
fprintf(screen,"Initializing GPUs %d-%d on core %d...",first_gpu,
last_gpu,i);
fflush(screen);
}
if (gpu_rank==i && world_me!=0)
init_ok=EAMMF.init(ntypes, host_cutforcesq,
host_type2rhor, host_type2z2r, host_type2frho,
host_rhor_spline, host_z2r_spline,
host_frho_spline,
rdr, rdrho, nrhor, nrho, nz2r, nfrho, nr,
nlocal, nall, 300, maxspecial,
cell_size, gpu_split, screen);
EAMMF.device->gpu_barrier();
if (message)
fprintf(screen,"Done.\n");
}
if (message)
fprintf(screen,"\n");
if (init_ok==0)
EAMMF.estimate_gpu_overhead();
return init_ok;
}
void eam_gpu_clear() {
EAMMF.clear();
}
int ** eam_gpu_compute_n(const int ago, const int inum_full,
const int nall, double **host_x, int *host_type,
double *sublo, double *subhi, int *tag, int **nspecial,
int **special, const bool eflag, const bool vflag,
const bool eatom, const bool vatom, int &host_start,
int **ilist, int **jnum, const double cpu_time,
bool &success, int &inum, void **fp_ptr) {
return EAMMF.compute(ago, inum_full, nall, host_x, host_type, sublo,
subhi, tag, nspecial, special, eflag, vflag, eatom,
vatom, host_start, ilist, jnum, cpu_time, success,
inum, fp_ptr);
}
void eam_gpu_compute(const int ago, const int inum_full, const int nlocal,
const int nall, double **host_x, int *host_type,
int *ilist, int *numj, int **firstneigh, const bool eflag,
const bool vflag, const bool eatom, const bool vatom,
int &host_start, const double cpu_time, bool &success,
void **fp_ptr) {
EAMMF.compute(ago,inum_full,nlocal,nall,host_x,host_type,ilist,numj,
firstneigh,eflag,vflag,eatom,vatom,host_start,cpu_time,success,
fp_ptr);
}
void eam_gpu_compute_force(int *ilist, const bool eflag, const bool vflag,
const bool eatom, const bool vatom) {
EAMMF.compute2(ilist, eflag, vflag, eatom, vatom);
}
double eam_gpu_bytes() {
return EAMMF.host_memory_usage();
}