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This is the first step for moving the documentation format from *.txt to the *.rst format. In the last years we've been automatically converting txt files from Steve's markup into RST to generate the documentation pages via Sphinx. The decision has now been made to fully migrate to RST and avoid the conversion in the future. This will enable us to fully use RST and Sphinx to improve the documentation. For the intermediate period, while there are still pending PRs with documentation changes, we will keep both source files and update the RST files accordingly.
138 lines
3.6 KiB
ReStructuredText
138 lines
3.6 KiB
ReStructuredText
Commands by category
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====================
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This page lists most of the LAMMPS commands, grouped by category. The
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:doc:`General commands <Commands_all>` doc page lists all general commands
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alphabetically. Style options for entries like fix, compute, pair etc.
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have their own pages where they are listed alphabetically.
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Initialization:
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* :doc:`newton <newton>`,
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* :doc:`package <package>`,
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* :doc:`processors <processors>`,
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* :doc:`suffix <suffix>`,
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* :doc:`units <units>`
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Setup simulation box:
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* :doc:`boundary <boundary>`,
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* :doc:`box <box>`,
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* :doc:`change\_box <change_box>`,
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* :doc:`create\_box <create_box>`,
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* :doc:`dimension <dimension>`,
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* :doc:`lattice <lattice>`,
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* :doc:`region <region>`
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Setup atoms:
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* :doc:`atom\_modify <atom_modify>`,
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* :doc:`atom\_style <atom_style>`,
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* :doc:`balance <balance>`,
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* :doc:`create\_atoms <create_atoms>`,
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* :doc:`create\_bonds <create_bonds>`,
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* :doc:`delete\_atoms <delete_atoms>`,
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* :doc:`delete\_bonds <delete_bonds>`,
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* :doc:`displace\_atoms <displace_atoms>`,
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* :doc:`group <group>`,
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* :doc:`mass <mass>`,
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* :doc:`molecule <molecule>`,
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* :doc:`read\_data <read_data>`,
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* :doc:`read\_dump <read_dump>`,
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* :doc:`read\_restart <read_restart>`,
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* :doc:`replicate <replicate>`,
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* :doc:`set <set>`,
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* :doc:`velocity <velocity>`
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Force fields:
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* :doc:`angle\_coeff <angle_coeff>`,
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* :doc:`angle\_style <angle_style>`,
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* :doc:`bond\_coeff <bond_coeff>`,
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* :doc:`bond\_style <bond_style>`,
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* :doc:`bond\_write <bond_write>`,
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* :doc:`dielectric <dielectric>`,
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* :doc:`dihedral\_coeff <dihedral_coeff>`,
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* :doc:`dihedral\_style <dihedral_style>`,
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* :doc:`improper\_coeff <improper_coeff>`,
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* :doc:`improper\_style <improper_style>`,
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* :doc:`kspace\_modify <kspace_modify>`,
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* :doc:`kspace\_style <kspace_style>`,
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* :doc:`pair\_coeff <pair_coeff>`,
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* :doc:`pair\_modify <pair_modify>`,
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* :doc:`pair\_style <pair_style>`,
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* :doc:`pair\_write <pair_write>`,
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* :doc:`special\_bonds <special_bonds>`
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Settings:
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* :doc:`comm\_modify <comm_modify>`,
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* :doc:`comm\_style <comm_style>`,
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* :doc:`info <info>`,
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* :doc:`min\_modify <min_modify>`,
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* :doc:`min\_style <min_style>`,
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* :doc:`neigh\_modify <neigh_modify>`,
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* :doc:`neighbor <neighbor>`,
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* :doc:`partition <partition>`,
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* :doc:`reset\_timestep <reset_timestep>`,
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* :doc:`run\_style <run_style>`,
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* :doc:`timer <timer>`,
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* :doc:`timestep <timestep>`
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Operations within timestepping (fixes) and diagnostics (computes):
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* :doc:`compute <compute>`,
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* :doc:`compute\_modify <compute_modify>`,
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* :doc:`fix <fix>`,
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* :doc:`fix\_modify <fix_modify>`,
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* :doc:`uncompute <uncompute>`,
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* :doc:`unfix <unfix>`
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Output:
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* :doc:`dump image <dump_image>`,
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* :doc:`dump movie <dump_image>`,
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* :doc:`dump <dump>`,
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* :doc:`dump\_modify <dump_modify>`,
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* :doc:`restart <restart>`,
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* :doc:`thermo <thermo>`,
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* :doc:`thermo\_modify <thermo_modify>`,
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* :doc:`thermo\_style <thermo_style>`,
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* :doc:`undump <undump>`,
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* :doc:`write\_coeff <write_coeff>`,
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* :doc:`write\_data <write_data>`,
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* :doc:`write\_dump <write_dump>`,
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* :doc:`write\_restart <write_restart>`
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Actions:
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* :doc:`minimize <minimize>`,
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* :doc:`neb <neb>`,
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* :doc:`neb\_spin <neb_spin>`,
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* :doc:`prd <prd>`,
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* :doc:`rerun <rerun>`,
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* :doc:`run <run>`,
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* :doc:`tad <tad>`,
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* :doc:`temper <temper>`
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Input script control:
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* :doc:`clear <clear>`,
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* :doc:`echo <echo>`,
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* :doc:`if <if>`,
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* :doc:`include <include>`,
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* :doc:`jump <jump>`,
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* :doc:`label <label>`,
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* :doc:`log <log>`,
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* :doc:`next <next>`,
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* :doc:`print <print>`,
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* :doc:`python <python>`,
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* :doc:`quit <quit>`,
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* :doc:`shell <shell>`,
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* :doc:`variable <variable>`
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.. _lws: http://lammps.sandia.gov
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.. _ld: Manual.html
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.. _lc: Commands_all.html
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