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lammps/doc/rst/Howto_spc.rst
Richard Berger 574e4067dc Add documentation files in RST format
This is the first step for moving the documentation format from *.txt to the
*.rst format.

In the last years we've been automatically converting txt files from Steve's
markup into RST to generate the documentation pages via Sphinx. The decision
has now been made to fully migrate to RST and avoid the conversion in the
future.

This will enable us to fully use RST and Sphinx to improve the documentation.

For the intermediate period, while there are still pending PRs with
documentation changes, we will keep both source files and update the RST files
accordingly.
2019-08-22 14:11:32 -06:00

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SPC water model
===============
The SPC water model specifies a 3-site rigid water molecule with
charges and Lennard-Jones parameters assigned to each of the 3 atoms.
In LAMMPS the :doc:`fix shake <fix_shake>` command can be used to hold
the two O-H bonds and the H-O-H angle rigid. A bond style of
*harmonic* and an angle style of *harmonic* or *charmm* should also be
used.
These are the additional parameters (in real units) to set for O and H
atoms and the water molecule to run a rigid SPC model.
| O mass = 15.9994
| H mass = 1.008
| O charge = -0.820
| H charge = 0.410
| LJ epsilon of OO = 0.1553
| LJ sigma of OO = 3.166
| LJ epsilon, sigma of OH, HH = 0.0
| r0 of OH bond = 1.0
| theta of HOH angle = 109.47
|
Note that as originally proposed, the SPC model was run with a 9
Angstrom cutoff for both LJ and Coulombic terms. It can also be used
with long-range Coulombics (Ewald or PPPM in LAMMPS), without changing
any of the parameters above, though it becomes a different model in
that mode of usage.
The SPC/E (extended) water model is the same, except
the partial charge assignments change:
| O charge = -0.8476
| H charge = 0.4238
|
See the :ref:`(Berendsen) <howto-Berendsen>` reference for more details on both
the SPC and SPC/E models.
Wikipedia also has a nice article on `water models <http://en.wikipedia.org/wiki/Water_model>`_.
----------
.. _howto-Berendsen:
**(Berendsen)** Berendsen, Grigera, Straatsma, J Phys Chem, 91,
6269-6271 (1987).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html