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8f608f6a3508ad82c00a2c369e5b82f311af2001
lammps/doc/src
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Axel Kohlmeyer 8f608f6a35 lo-level -> low-level
2020-03-01 10:30:06 -05:00
..
_ext
update sphinx extension to automatically pad lists to fill tables and avoid errors processing the documentation
2020-01-21 11:39:29 -05:00
99
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2001
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Developer
move developer's guide tex sources back to src/Developer
2019-11-15 12:37:46 -05:00
JPG
trim the lammps logo a little bit
2020-02-23 15:01:10 -05:00
PDF
Update Colvars library to version 2020-01-27
2020-01-28 14:15:05 -05:00
USER/atc
…
.gitignore
merged in current master
2020-01-13 10:34:31 -07:00
angle_charmm.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_class2.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_coeff.rst
merged in current master
2020-01-13 10:34:31 -07:00
angle_cosine_buck6d.rst
remove some unneeded backslash escapes
2020-01-29 14:33:36 -05:00
angle_cosine_delta.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_cosine_periodic.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_cosine_shift_exp.rst
remove some unneeded backslash escapes
2020-01-29 14:33:36 -05:00
angle_cosine_shift.rst
remove some unneeded backslash escapes
2020-01-29 14:33:36 -05:00
angle_cosine_squared.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_cosine.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_cross.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_dipole.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_fourier_simple.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_fourier.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_harmonic.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_hybrid.rst
merged in current master
2020-01-13 10:34:31 -07:00
angle_mm3.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_none.rst
merged in current master
2020-01-13 10:34:31 -07:00
angle_quartic.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
angle_sdk.rst
some more cases where we can use embedded math
2020-02-29 04:57:44 -05:00
angle_style.rst
merged in current master
2020-01-13 10:34:31 -07:00
angle_table.rst
merged in current master
2020-01-13 10:34:31 -07:00
angle_zero.rst
merged in current master
2020-01-13 10:34:31 -07:00
angles.rst
merged in current master
2020-01-13 10:34:31 -07:00
atom_modify.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
atom_style.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
balance.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
bond_class2.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_coeff.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_fene_expand.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_fene.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_gromos.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_harmonic_shift_cut.rst
remove some unneeded backslash escapes
2020-01-29 14:33:36 -05:00
bond_harmonic_shift.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_harmonic.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_hybrid.rst
merged in current master
2020-01-13 10:34:31 -07:00
bond_mm3.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_morse.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_none.rst
merged in current master
2020-01-13 10:34:31 -07:00
bond_nonlinear.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_oxdna.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_quartic.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_style.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_table.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bond_write.rst
merged in current master
2020-01-13 10:34:31 -07:00
bond_zero.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
bonds.rst
merged in current master
2020-01-13 10:34:31 -07:00
boundary.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
box.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
Build_basics.rst
added script to check for missing packages in package tables in manual
2020-02-22 11:46:31 -05:00
Build_cmake.rst
replace more "parsed-literal" with "code-block" in build docs
2020-02-19 16:11:42 -05:00
Build_development.rst
replace more "parsed-literal" with "code-block" in build docs
2020-02-19 16:11:42 -05:00
Build_extras.rst
more typesetting updates
2020-02-22 07:40:31 -05:00
Build_link.rst
small correction/simplification of the linking to LAMMPS library examples
2020-02-25 17:36:37 +01:00
Build_make.rst
more cosmetic changes and replacing "dirs" with "directories"
2020-02-20 18:20:00 +01:00
Build_package.rst
remove references and docs about using subversion to download LAMMPS
2020-02-22 05:49:30 -05:00
Build_settings.rst
more small improvements and additions
2020-02-21 16:52:44 -05:00
Build_windows.rst
correct some grammar and style issues in describing using/building LAMMPS on windows
2020-02-17 10:27:57 +01:00
Build.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
change_box.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
clear.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
comm_modify.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
comm_style.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
Commands_all.rst
tweak command overview table width so it is readable in PDF
2020-02-28 18:51:52 +01:00
Commands_bond.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
Commands_category.rst
convert lists to tables for more compact presentation
2020-02-28 18:52:13 +01:00
Commands_compute.rst
tweak command overview table width so it is readable in PDF
2020-02-28 18:51:52 +01:00
Commands_fix.rst
tweak command overview table width so it is readable in PDF
2020-02-28 18:51:52 +01:00
Commands_input.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
Commands_kspace.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
commands_list.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
Commands_pair.rst
tweak command overview table width so it is readable in PDF
2020-02-28 18:51:52 +01:00
Commands_parse.rst
improve layout and logical structure. add references
2020-02-22 10:39:15 -05:00
Commands_removed.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
Commands_structure.rst
make names/lables more consistent and avoid reference errors in sphinx
2020-02-22 13:24:23 -05:00
Commands.rst
merged in current master
2020-01-13 10:34:31 -07:00
compute_ackland_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_adf.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_angle_local.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_angle.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_angmom_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_basal_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_body_local.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_bond_local.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_bond.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_centro_atom.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_chunk_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_chunk_spread_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_cluster_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_cna_atom.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_cnp_atom.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_com_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_com.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_contact_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_coord_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_damage_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_dihedral_local.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_dihedral.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_dilatation_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_dipole_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_displace_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_dpd_atom.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_dpd.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_edpd_temp_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_entropy_atom.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_erotate_asphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_erotate_rigid.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_erotate_sphere_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_erotate_sphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_event_displace.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_fep.rst
Merge branch 'master' into doc-continued-refactoring
2020-02-17 17:37:10 +01:00
compute_global_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_group_group.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_gyration_chunk.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_gyration_shape_chunk.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_gyration_shape.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_gyration.rst
first chunk of compute commands to be converted to use embedded math
2020-02-04 17:05:23 -05:00
compute_heat_flux.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_hexorder_atom.rst
fix up remaining computes for embedded math and a few other issues
2020-02-10 16:21:19 -05:00
compute_hma.rst
remove \begin{equation} \end{equation} which are not needed and break epub
2020-02-21 13:21:59 -05:00
compute_improper_local.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_improper.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_inertia_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_ke_atom_eff.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
compute_ke_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_ke_eff.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
compute_ke_rigid.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_ke.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
compute_meso_e_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_meso_rho_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_meso_t_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_modify.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
compute_momentum.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_msd_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_msd_nongauss.rst
fix up remaining computes for embedded math and a few other issues
2020-02-10 16:21:19 -05:00
compute_msd.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_omega_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_orientorder_atom.rst
fix up remaining computes for embedded math and a few other issues
2020-02-10 16:21:19 -05:00
compute_pair_local.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_pair.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_pe_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_pe.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_plasticity_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_pressure_cylinder.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_pressure_uef.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_pressure.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
compute_property_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_property_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_property_local.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_ptm_atom.rst
add explanation of use of group2 and document effect of compute group
2020-02-26 13:12:14 +01:00
compute_rdf.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_reduce_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_reduce.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_rigid_local.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_saed.rst
fix up remaining computes for embedded math and a few other issues
2020-02-10 16:21:19 -05:00
compute_slice.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_contact_radius.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_damage.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_hourglass_error.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_internal_energy.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_plastic_strain_rate.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_plastic_strain.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_rho.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_tlsph_defgrad.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_tlsph_dt.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_tlsph_num_neighs.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_tlsph_shape.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_tlsph_strain_rate.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_tlsph_strain.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_tlsph_stress.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_triangle_vertices.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_smd_ulsph_num_neighs.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
compute_smd_ulsph_strain_rate.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
compute_smd_ulsph_strain.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
compute_smd_ulsph_stress.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
compute_smd_vol.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_sna_atom.rst
Moved the chunking keyword to pair_snap.rst
2020-02-24 15:09:51 -07:00
compute_spin.rst
merged in current master
2020-01-13 10:34:31 -07:00
compute_stress_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_stress_mop.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_tally.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_tdpd_cc_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_asphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_body.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_com.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_cs.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_deform_eff.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_deform.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_drude.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_eff.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_partial.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_profile.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_ramp.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_region_eff.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_region.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_rotate.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_sphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp_uef.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_temp.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_ti.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_torque_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_vacf.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_vcm_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_voronoi_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
compute_xrd.rst
convert compute xrd to use embedded math
2020-02-11 11:26:29 +01:00
compute.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
computes.rst
merged in current master
2020-01-13 10:34:31 -07:00
create_atoms.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
create_bonds.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
create_box.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
delete_atoms.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
delete_bonds.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dielectric.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
dihedral_charmm.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_class2.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_coeff.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_cosine_shift_exp.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_fourier.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_harmonic.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_helix.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_hybrid.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_multi_harmonic.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_nharmonic.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_none.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_opls.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_quadratic.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_spherical.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_style.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_table_cut.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_table.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedral_zero.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dihedrals.rst
merged in current master
2020-01-13 10:34:31 -07:00
dimension.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
displace_atoms.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dump_adios.rst
delete superfluous horizontal line plus preceding empty lines at the end of doc files
2020-01-31 14:06:14 -05:00
dump_cfg_uef.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
dump_h5md.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
dump_image.rst
replace more raw html code and add syntax highlighting
2020-02-28 18:00:43 +01:00
dump_modify.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
dump_molfile.rst
delete empty lines at the end of files
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dump_netcdf.rst
delete empty lines at the end of files
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dump_vtk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
dump.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
dynamical_matrix.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
echo.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
Errors_bugs.rst
address spelling errors
2020-01-31 16:54:27 -05:00
Errors_common.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
Errors_messages.rst
fix some minor style issues
2020-02-21 15:12:53 -05:00
Errors_warnings.rst
fix some minor style issues
2020-02-21 15:12:53 -05:00
Errors.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
Examples.rst
more cosmetic changes and replacing "dirs" with "directories"
2020-02-20 18:20:00 +01:00
fix_adapt_fep.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_adapt.rst
delete empty lines at the end of files
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fix_addforce.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_addtorque.rst
delete empty lines at the end of files
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fix_append_atoms.rst
delete empty lines at the end of files
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fix_atc.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_atom_swap.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_ave_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_ave_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_ave_correlate_long.rst
fix typo in markup resulting in broken link
2020-02-21 13:39:31 -05:00
fix_ave_correlate.rst
delete empty lines at the end of files
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fix_ave_histo.rst
delete empty lines at the end of files
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fix_ave_time.rst
delete empty lines at the end of files
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fix_aveforce.rst
delete empty lines at the end of files
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fix_balance.rst
delete empty lines at the end of files
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fix_bocs.rst
delete empty lines at the end of files
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fix_bond_break.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_bond_create.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_bond_react.rst
fix bond/react, box/relax, ehex
2020-02-11 16:14:00 +01:00
fix_bond_swap.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_box_relax.rst
fix bond/react, box/relax, ehex
2020-02-11 16:14:00 +01:00
fix_client_md.rst
replace dir with directory where appropriate
2020-02-21 15:08:18 -05:00
fix_cmap.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_colvars.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_controller.rst
fix controller
2020-02-11 16:28:45 +01:00
fix_deform.rst
delete empty lines at the end of files
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fix_deposit.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_dpd_energy.rst
delete empty lines at the end of files
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fix_dpd_source.rst
delete empty lines at the end of files
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fix_drag.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_drude_transform.rst
remove \begin{equation} \end{equation} which are not needed and break epub
2020-02-21 13:21:59 -05:00
fix_drude.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_dt_reset.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_efield.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_ehex.rst
fix bond/react, box/relax, ehex
2020-02-11 16:14:00 +01:00
fix_electron_stopping.rst
remove \begin{equation} \end{equation} which are not needed and break epub
2020-02-21 13:21:59 -05:00
fix_enforce2d.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_eos_cv.rst
convert docs for fixes eos/cv, eos/table/rx, gcmc, grem, langevin/spin, lb/fluid
2020-02-14 12:27:55 +01:00
fix_eos_table_rx.rst
convert docs for fixes eos/cv, eos/table/rx, gcmc, grem, langevin/spin, lb/fluid
2020-02-14 12:27:55 +01:00
fix_eos_table.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_evaporate.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_external.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_ffl.rst
remove \begin{equation} \end{equation} which are not needed and break epub
2020-02-21 13:21:59 -05:00
fix_filter_corotate.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_flow_gauss.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_freeze.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_gcmc.rst
convert docs for fixes eos/cv, eos/table/rx, gcmc, grem, langevin/spin, lb/fluid
2020-02-14 12:27:55 +01:00
fix_gld.rst
convert some more fixes
2020-02-15 02:31:50 -05:00
fix_gle.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_gravity.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_grem.rst
convert docs for fixes eos/cv, eos/table/rx, gcmc, grem, langevin/spin, lb/fluid
2020-02-14 12:27:55 +01:00
fix_halt.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_heat.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_hyper_global.rst
typeset hyperdynamics fix docs with embedded math
2020-02-15 06:50:04 -05:00
fix_hyper_local.rst
some more formatting and math conversion improvements
2020-02-27 18:18:49 -05:00
fix_imd.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_indent.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_ipi.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_langevin_drude.rst
remove \begin{equation} \end{equation} which are not needed and break epub
2020-02-21 13:21:59 -05:00
fix_langevin_eff.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
fix_langevin_spin.rst
convert docs for fixes eos/cv, eos/table/rx, gcmc, grem, langevin/spin, lb/fluid
2020-02-14 12:27:55 +01:00
fix_langevin.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
fix_latte.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_lb_fluid.rst
encode some more mathematical expressions and symbols
2020-03-01 09:25:20 -05:00
fix_lb_momentum.rst
delete empty lines at the end of files
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fix_lb_pc.rst
delete empty lines at the end of files
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fix_lb_rigid_pc_sphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_lb_viscous.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_lineforce.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_manifoldforce.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_meso_move.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_meso_stationary.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_meso.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_modify.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
fix_momentum.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_move.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_mscg.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_msst.rst
replace raw html with embedded math expressions and fix related issues
2020-02-28 17:39:57 +01:00
fix_mvv_dpd.rst
convert some more fixes
2020-02-15 02:31:50 -05:00
fix_neb_spin.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_neb.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nh_eff.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nh_uef.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nh.rst
convert docs for more fixes
2020-02-15 11:35:21 -05:00
fix_nph_asphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nph_body.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nph_sphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nphug.rst
convert some more fixes
2020-02-15 02:31:50 -05:00
fix_npt_asphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_npt_body.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_npt_cauchy.rst
convert docs for more fixes
2020-02-15 11:35:21 -05:00
fix_npt_sphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_asphere_noforce.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_asphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_awpmd.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_body.rst
delete empty lines at the end of files
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fix_nve_dot.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_dotc_langevin.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
fix_nve_eff.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_limit.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_line.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_manifold_rattle.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_noforce.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_sphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve_spin.rst
convert some more fixes
2020-02-15 02:31:50 -05:00
fix_nve_tri.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nve.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nvk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nvt_asphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nvt_body.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nvt_manifold_rattle.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nvt_sllod_eff.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nvt_sllod.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_nvt_sphere.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_oneway.rst
delete superfluous horizontal line plus preceding empty lines at the end of doc files
2020-01-31 14:06:14 -05:00
fix_orient.rst
convert docs for more fixes
2020-02-15 11:35:21 -05:00
fix_phonon.rst
remove \begin{equation} \end{equation} which are not needed and break epub
2020-02-21 13:21:59 -05:00
fix_pimd.rst
convert some more fixes
2020-02-15 02:31:50 -05:00
fix_planeforce.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_plumed.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_poems.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_pour.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_precession_spin.rst
remove more \_ escapes from doc anchors and a bunch of other issues found in the process
2020-01-31 00:45:13 -05:00
fix_press_berendsen.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_print.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_propel_self.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_property_atom.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_python_invoke.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_python_move.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_qbmsst.rst
encode some more mathematical expressions and symbols
2020-03-01 09:25:20 -05:00
fix_qeq_comb.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_qeq_reax.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_qeq.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_qmmm.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_qtb.rst
replace raw html with embedded math expressions and fix related issues
2020-02-28 17:39:57 +01:00
fix_reaxc_bonds.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_reaxc_species.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_recenter.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_restrain.rst
remove backslash escapes for underscore in doc references
2020-01-23 16:52:38 -05:00
fix_rhok.rst
convert some more fixes
2020-02-15 02:31:50 -05:00
fix_rigid_meso.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_rigid.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_rx.rst
convert some more fixes
2020-02-15 02:31:50 -05:00
fix_saed_vtk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_setforce.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_shake.rst
convert docs for more fixes
2020-02-15 11:35:21 -05:00
fix_shardlow.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_smd_adjust_dt.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
fix_smd_integrate_tlsph.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
fix_smd_integrate_ulsph.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
fix_smd_move_triangulated_surface.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
fix_smd_setvel.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_smd_wall_surface.rst
First batch of index cleanup and code-blocks
2020-02-25 14:46:22 -05:00
fix_smd.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_spring_chunk.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_spring_rg.rst
convert docs for more fixes
2020-02-15 11:35:21 -05:00
fix_spring_self.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_spring.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_srd.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
fix_store_force.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_store_state.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_temp_berendsen.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_temp_csvr.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_temp_rescale_eff.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_temp_rescale.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_tfmc.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_thermal_conductivity.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_ti_spring.rst
convert docs for more fixes
2020-02-15 11:35:21 -05:00
fix_tmd.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_ttm.rst
convert docs for more fixes
2020-02-15 11:35:21 -05:00
fix_tune_kspace.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_vector.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_viscosity.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_viscous.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
fix_wall_body_polygon.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_wall_body_polyhedron.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_wall_ees.rst
convert wall fixes to embedded math
2020-02-15 12:13:32 -05:00
fix_wall_gran_region.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_wall_gran.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_wall_piston.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_wall_reflect_stochastic.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_wall_reflect.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_wall_region.rst
convert wall fixes to embedded math
2020-02-15 12:13:32 -05:00
fix_wall_srd.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fix_wall.rst
some more formatting and math conversion improvements
2020-02-27 18:18:49 -05:00
fix.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
fixes.rst
merged in current master
2020-01-13 10:34:31 -07:00
group2ndx.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
group.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
Howto_2d.rst
switch parsed-literal to code-block in Howto files where applicable
2020-02-27 12:45:14 -05:00
Howto_barostat.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
Howto_bash.rst
switch parsed-literal to code-block in Howto files where applicable
2020-02-27 12:45:14 -05:00
Howto_bioFF.rst
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Howto_client_server.rst
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Howto_coreshell.rst
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Howto_couple.rst
Merge pull request #1888 from lammps/release-preparation
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Howto_diffusion.rst
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Howto_drude2.rst
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Howto_elastic.rst
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Howto_github.rst
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Howto_granular.rst
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Howto_triclinic.rst
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Howto.rst
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hyper.rst
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if.rst
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improper_zero.rst
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impropers.rst
merged in current master
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include.rst
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info.rst
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Install_conda.rst
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Install_git.rst
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Install_mac.rst
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Install_patch.rst
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Install.rst
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Intro_authors.rst
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Intro_features.rst
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Intro.rst
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jump.rst
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kim_commands.rst
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kspace_style.rst
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label.rst
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lattice.rst
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log.rst
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Manual_build.rst
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mass.rst
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message.rst
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min_modify.rst
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minimize.rst
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Modify.rst
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molecule.rst
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neb_spin.rst
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neb.rst
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neigh_modify.rst
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neighbor.rst
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newton.rst
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next.rst
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package.rst
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Packages_details.rst
Merge commit 'refs/pull/1893/head' of github.com:lammps/lammps into release-preparation
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Packages_standard.rst
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Packages.rst
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pair_adp.rst
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pair_agni.rst
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pair_airebo.rst
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pair_atm.rst
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pair_awpmd.rst
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pair_beck.rst
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pair_body_nparticle.rst
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pair_body_rounded_polygon.rst
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pair_body_rounded_polyhedron.rst
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pair_bop.rst
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pair_born.rst
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pair_brownian.rst
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pair_buck6d_coul_gauss.rst
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pair_buck_long.rst
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pair_buck.rst
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pair_class2.rst
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pair_coeff.rst
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pair_colloid.rst
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pair_comb.rst
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pair_cosine_squared.rst
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pair_coul_diel.rst
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pair_coul_shield.rst
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pair_coul.rst
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pair_cs.rst
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pair_dipole.rst
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pair_dpd_fdt.rst
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pair_dpd.rst
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pair_drip.rst
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pair_dsmc.rst
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pair_e3b.rst
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pair_eam.rst
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pair_edip.rst
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pair_eff.rst
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pair_eim.rst
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pair_exp6_rx.rst
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pair_extep.rst
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pair_fep_soft.rst
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pair_gauss.rst
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pair_gayberne.rst
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pair_gran.rst
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pair_granular.rst
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pair_gromacs.rst
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pair_gw.rst
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pair_hbond_dreiding.rst
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pair_hybrid.rst
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pair_ilp_graphene_hbn.rst
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pair_kim.rst
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pair_lebedeva_z.rst
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pair_line_lj.rst
some more cases where we can use embedded math
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pair_list.rst
remove backslash escapes for underscore in doc references
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pair_lj96.rst
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pair_lj_cubic.rst
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pair_lj_expand.rst
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pair_lj_long.rst
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pair_lj_smooth_linear.rst
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pair_lj_smooth.rst
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pair_lj_switch3_coulgauss_long.rst
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pair_lj.rst
some more formatting and math conversion improvements
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pair_local_density.rst
some more formatting and math conversion improvements
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pair_lubricate.rst
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pair_lubricateU.rst
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pair_mdf.rst
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pair_meam_spline.rst
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pair_meam_sw_spline.rst
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pair_meamc.rst
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pair_meso.rst
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pair_mesocnt.rst
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pair_mgpt.rst
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pair_mie.rst
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pair_mm3_switch3_coulgauss_long.rst
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pair_modify.rst
typeset mixing rules with embedded math
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pair_momb.rst
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pair_morse.rst
some more formatting and math conversion improvements
2020-02-27 18:18:49 -05:00
pair_multi_lucy_rx.rst
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pair_multi_lucy.rst
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pair_nb3b_harmonic.rst
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pair_nm.rst
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pair_none.rst
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pair_oxdna2.rst
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pair_oxdna.rst
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pair_oxrna2.rst
remove backslash escapes for underscore in doc references
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pair_peri.rst
some more formatting and math conversion improvements
2020-02-27 18:18:49 -05:00
pair_polymorphic.rst
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pair_python.rst
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pair_quip.rst
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pair_reaxc.rst
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pair_resquared.rst
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pair_sdk.rst
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pair_sdpd_taitwater_isothermal.rst
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pair_smd_hertz.rst
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pair_smd_tlsph.rst
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pair_smd_triangulated_surface.rst
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pair_smd_ulsph.rst
First batch of index cleanup and code-blocks
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pair_smtbq.rst
convert the remainder of raw html typesetting in pair style smtbq
2020-02-29 14:45:39 -05:00
pair_snap.rst
some more formatting and math conversion improvements
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pair_soft.rst
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pair_sph_heatconduction.rst
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pair_sph_idealgas.rst
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pair_sph_lj.rst
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pair_sph_rhosum.rst
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pair_sph_taitwater_morris.rst
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pair_sph_taitwater.rst
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pair_spin_dipole.rst
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pair_spin_dmi.rst
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pair_spin_exchange.rst
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pair_spin_magelec.rst
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pair_spin_neel.rst
remove backslash escapes for underscore in doc references
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pair_srp.rst
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pair_style.rst
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pair_sw.rst
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pair_table_rx.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
pair_table.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
pair_tersoff_mod.rst
Final batch of index cleanup and code-blocks
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pair_tersoff_zbl.rst
Final batch of index cleanup and code-blocks
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pair_tersoff.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
pair_thole.rst
some more formatting and math conversion improvements
2020-02-27 18:18:49 -05:00
pair_tri_lj.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
pair_ufm.rst
Final batch of index cleanup and code-blocks
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pair_vashishta.rst
Final batch of index cleanup and code-blocks
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pair_write.rst
Final batch of index cleanup and code-blocks
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pair_yukawa_colloid.rst
Final batch of index cleanup and code-blocks
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pair_yukawa.rst
Final batch of index cleanup and code-blocks
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pair_zbl.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
pair_zero.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
pairs.rst
merged in current master
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partition.rst
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prd.rst
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print.rst
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processors.rst
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Python_call.rst
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Python_examples.rst
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Python_head.rst
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Python_install.rst
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Python_library.rst
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Python_mpi.rst
lo-level -> low-level
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Python_overview.rst
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Python_pylammps.rst
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Python_run.rst
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Python_shlib.rst
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Python_test.rst
some more formatting and math conversion improvements
2020-02-27 18:18:49 -05:00
python.rst
replace parsed-literal with code-block where applicable. improve typesetting
2020-02-22 13:50:35 -05:00
quit.rst
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read_data.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
read_dump.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
read_restart.rst
Final batch of index cleanup and code-blocks
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region.rst
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replicate.rst
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rerun.rst
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reset_ids.rst
Final batch of index cleanup and code-blocks
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reset_timestep.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
restart.rst
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Run_basics.rst
more typesetting updates
2020-02-22 07:40:31 -05:00
Run_head.rst
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Run_options.rst
replace hi- with high-
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Run_output.rst
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run_style.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
Run_windows.rst
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run.rst
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server_mc.rst
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server_md.rst
Merge branch 'master' into nwchem
2020-01-31 15:56:25 -05:00
server_md.txt
merged in current master
2020-01-13 10:34:31 -07:00
server.rst
delete empty lines at the end of files
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set.rst
fix up remaining computes for embedded math and a few other issues
2020-02-10 16:21:19 -05:00
shell.rst
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special_bonds.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
Speed_bench.rst
more cosmetic changes and replacing "dirs" with "directories"
2020-02-20 18:20:00 +01:00
Speed_compare.rst
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Speed_gpu.rst
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Speed_intel.rst
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Speed_kokkos.rst
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Speed_measure.rst
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Speed_omp.rst
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Speed_opt.rst
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Speed_packages.rst
change pseudo external link to internal link. provide links to the command subpages
2020-02-22 18:41:36 -05:00
Speed_tips.rst
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Speed.rst
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suffix.rst
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tad.rst
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temper_grem.rst
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temper_npt.rst
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temper.rst
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thermo_modify.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
thermo_style.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
thermo.rst
delete empty lines at the end of files
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third_order.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
timer.rst
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timestep.rst
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2020-01-31 14:03:52 -05:00
Tools.rst
fix some minor style issues
2020-02-21 15:12:53 -05:00
uncompute.rst
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undump.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
unfix.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
units.rst
use k_B consistently, fix some more math. convert some transcriptions to math
2020-02-29 11:37:31 -05:00
variable.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
velocity.rst
delete empty lines at the end of files
2020-01-31 14:03:52 -05:00
write_coeff.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
write_data.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
write_dump.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00
write_restart.rst
Final batch of index cleanup and code-blocks
2020-02-27 11:08:04 -05:00