b22a8a7b61
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10639 f3b2605a-c512-4ea7-a41b-209d697bcdaa
126 lines
7.1 KiB
Plaintext
126 lines
7.1 KiB
Plaintext
LAMMPS (24 Aug 2013)
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units real
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atom_style atomic
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variable L equal 12
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variable l2 equal 6
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variable l equal 4
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variable w equal 2
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lattice fcc 5.405 origin 0.25 0.25 0.25
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Lattice spacing in x,y,z = 5.405 5.405 5.405
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region mdInternal block -$l $l -$l $l -$w $w
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region mdInternal block -4 $l -$l $l -$w $w
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region mdInternal block -4 4 -$l $l -$w $w
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region mdInternal block -4 4 -4 $l -$w $w
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region mdInternal block -4 4 -4 4 -$w $w
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region mdInternal block -4 4 -4 4 -2 $w
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region mdInternal block -4 4 -4 4 -2 2
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boundary f f f # p
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pair_style lj/cut 13.5
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read_data temp.init
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Reading data file ...
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orthogonal box = (-64.86 -64.86 -10.81) to (64.86 64.86 10.81)
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2 by 2 by 1 MPI processor grid
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2304 atoms
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2304 velocities
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fix ZWALLS all wall/reflect zlo EDGE zhi EDGE
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mass 1 39.95
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pair_coeff 1 1 .238 3.405 13.5
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group internal region mdInternal
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1024 atoms in group internal
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fix AtC internal atc two_temperature Ar_ttm.mat
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ATC: constructing two_temperature coupling with parameter file Ar_ttm.mat
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ATC: version 2.0
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ATC: peratom PE compute created with ID: 3
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terminate called after throwing an instance of 'terminate called after throwing an instance of 'ATC::ATC_Error'
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[pharsalus:44875] *** Process received signal ***
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[pharsalus:44875] Signal: Aborted (6)
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[pharsalus:44875] Signal code: (-6)
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terminate called after throwing an instance of 'ATC::ATC_Error'
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[pharsalus:44881] *** Process received signal ***
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[pharsalus:44881] Signal: Aborted (6)
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[pharsalus:44881] Signal code: (-6)
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terminate called after throwing an instance of 'ATC::ATC_Error'
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[pharsalus:44889] *** Process received signal ***
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ATC: P1, ERROR: mesh file is of unknown type.
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ATC: P2, ERROR: mesh file is of unknown type.
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ATC: P3, ERROR: mesh file is of unknown type.
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ATC: 2 materials defined from Ar_ttm.mat
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ATC: creating two_temperature extrinsic model
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ATC: 2 materials defined from Ar_ttm.mat
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#fix_modify AtC mesh read gaussianIC2d_hex_uniform.mesh f f p
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fix_modify AtC mesh read gaussianIC2d_hex_uniform.exo f f p
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ATC: P0, ERROR: mesh file is of unknown type.
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[pharsalus:44889] Signal: Aborted (6)
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[pharsalus:44889] Signal code: (-6)
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ATC::ATC_Error'
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[pharsalus:44868] *** Process received signal ***
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[pharsalus:44868] Signal: Aborted (6)
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[pharsalus:44868] Signal code: (-6)
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[pharsalus:44875] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
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[pharsalus:44881] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
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[pharsalus:44881] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
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[pharsalus:44881] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
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[pharsalus:44881] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
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[pharsalus:44881] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
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[pharsalus:44881] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
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[pharsalus:44881] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
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[pharsalus:44881] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x68e130]
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[pharsalus:44881] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x6b6279]
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[pharsalus:44881] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x7969eb]
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[pharsalus:44881] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7984cc]
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[pharsalus:44881] [11] ../../../lmp_openmpi(main+0x49) [0x7a6409]
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[pharsalus:44881] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
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[pharsalus:44881] [13] ../../../lmp_openmpi() [0x538bc9]
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[pharsalus:44881] *** End of error message ***
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[pharsalus:44875] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
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[pharsalus:44889] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
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[pharsalus:44875] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
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[pharsalus:44875] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
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[pharsalus:44875] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
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[pharsalus:44875] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
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[pharsalus:44875] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
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[pharsalus:44875] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x68e130]
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[pharsalus:44875] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x6b6279]
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[pharsalus:44875] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x7969eb]
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[pharsalus:44875] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7984cc]
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[pharsalus:44875] [11] ../../../lmp_openmpi(main+0x49) [0x7a6409]
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[pharsalus:44875] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
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[pharsalus:44875] [13] ../../../lmp_openmpi() [0x538bc9]
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[pharsalus:44875] *** End of error message ***
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[pharsalus:44889] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
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[pharsalus:44868] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
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[pharsalus:44868] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
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[pharsalus:44868] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
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[pharsalus:44868] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
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[pharsalus:44868] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
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[pharsalus:44868] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
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[pharsalus:44868] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
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[pharsalus:44868] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x68e130]
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[pharsalus:44868] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x6b6279]
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[pharsalus:44868] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x7969eb]
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[pharsalus:44868] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7984cc]
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[pharsalus:44868] [11] ../../../lmp_openmpi(main+0x49) [0x7a6409]
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[pharsalus:44868] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
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[pharsalus:44868] [13] ../../../lmp_openmpi() [0x538bc9]
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[pharsalus:44868] *** End of error message ***
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[pharsalus:44889] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
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[pharsalus:44889] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
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[pharsalus:44889] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
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[pharsalus:44889] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
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[pharsalus:44889] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
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[pharsalus:44889] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x68e130]
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[pharsalus:44889] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x6b6279]
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[pharsalus:44889] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x7969eb]
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[pharsalus:44889] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7984cc]
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[pharsalus:44889] [11] ../../../lmp_openmpi(main+0x49) [0x7a6409]
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[pharsalus:44889] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
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[pharsalus:44889] [13] ../../../lmp_openmpi() [0x538bc9]
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[pharsalus:44889] *** End of error message ***
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--------------------------------------------------------------------------
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mpirun noticed that process rank 2 with PID 44881 on node pharsalus exited on signal 6 (Aborted).
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--------------------------------------------------------------------------
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