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lammps/examples/PACKAGES/fep/CH4hyd/fep01/log.fep01
2021-06-29 11:23:47 -04:00

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LAMMPS (29 Oct 2020)
OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/lammps/src/comm.cpp:94)
using 1 OpenMP thread(s) per MPI task
# created by fftool
print "Methane in TIP4P water"
Methane in TIP4P water
units real
boundary p p p
atom_style full
bond_style harmonic
angle_style harmonic
special_bonds lj/coul 0.0 0.0 0.5
read_data data.lmp
Reading data file ...
orthogonal box = (-13.443762 -13.443762 -13.443762) to (13.443762 13.443762 13.443762)
2 by 2 by 3 MPI processor grid
reading atoms ...
1085 atoms
scanning bonds ...
1 = max bonds/atom
scanning angles ...
6 = max angles/atom
reading bonds ...
724 bonds
reading angles ...
366 angles
Finding 1-2 1-3 1-4 neighbors ...
special bond factors lj: 0 0 0.5
special bond factors coul: 0 0 0.5
4 = max # of 1-2 neighbors
3 = max # of 1-3 neighbors
3 = max # of 1-4 neighbors
4 = max # of special neighbors
special bonds CPU = 0.001 seconds
read_data CPU = 0.015 seconds
pair_style hybrid lj/cut/coul/long 10.0 10.0 lj/cut/tip4p/long/soft 3 4 2 2 0.125 1 0.5 10.0 10.0 10.0
pair_modify tail no
kspace_style pppm/tip4p 1.0e-4
pair_coeff 1 1 lj/cut/coul/long 0.0660 3.5000 # C4H C4H
pair_coeff 1 2 lj/cut/coul/long 0.0445 2.9580 # C4H H
pair_coeff 2 2 lj/cut/coul/long 0.0300 2.5000 # H H
pair_coeff 3 3 lj/cut/tip4p/long/soft 0.1628 3.1644 1.0 # Ow Ow
pair_coeff 3 4 lj/cut/tip4p/long/soft 0.0000 1.0000 1.0 # Ow Hw
pair_coeff 4 4 lj/cut/tip4p/long/soft 0.0000 1.0000 1.0 # Hw Hw
pair_coeff 1 3 lj/cut/tip4p/long/soft 0.1036 3.3279 0.0 # C4H Ow
pair_coeff 1 4 lj/cut/tip4p/long/soft 0.0000 1.0000 0.0 # C4H Hw
pair_coeff 2 3 lj/cut/tip4p/long/soft 0.0699 2.8126 0.0 # H Ow
pair_coeff 2 4 lj/cut/tip4p/long/soft 0.0000 1.0000 0.0 # H Hw
variable TK equal 300.0
variable PBAR equal 1.0
fix SHAKE all shake 0.0001 20 0 b 2 a 2
0 = # of size 2 clusters
0 = # of size 3 clusters
0 = # of size 4 clusters
360 = # of frozen angles
find clusters CPU = 0.001 seconds
neighbor 2.0 bin
timestep 1.0
velocity all create ${TK} 12345
velocity all create 300 12345
thermo_style custom step etotal ke pe evdwl ecoul elong temp press density
thermo 5000
fix TPSTAT all npt temp ${TK} ${TK} 100 iso ${PBAR} ${PBAR} 1000
fix TPSTAT all npt temp 300 ${TK} 100 iso ${PBAR} ${PBAR} 1000
fix TPSTAT all npt temp 300 300 100 iso ${PBAR} ${PBAR} 1000
fix TPSTAT all npt temp 300 300 100 iso 1 ${PBAR} 1000
fix TPSTAT all npt temp 300 300 100 iso 1 1 1000
set type 1*2 charge 0.0
Setting atom values ...
5 settings made for charge
run 100000
PPPM initialization ...
extracting TIP4P info from pair style
using 12-bit tables for long-range coulomb (src/lammps/src/kspace.cpp:339)
G vector (1/distance) = 0.27021504
grid = 15 15 15
stencil order = 5
estimated absolute RMS force accuracy = 0.025869595
estimated relative force accuracy = 7.7905518e-05
using double precision FFTW3
3d grid and FFT values/proc = 2352 450
Neighbor list info ...
update every 1 steps, delay 10 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 12.25
ghost atom cutoff = 12.25
binsize = 6.125, bins = 5 5 5
3 neighbor lists, perpetual/occasional/extra = 3 0 0
(1) pair lj/cut/coul/long, perpetual, skip from (3)
attributes: half, newton on
pair build: skip
stencil: none
bin: none
(2) pair lj/cut/tip4p/long/soft, perpetual, skip from (3)
attributes: half, newton on
pair build: skip
stencil: none
bin: none
(3) neighbor class addition, perpetual
attributes: half, newton on
pair build: half/bin/newton
stencil: half/bin/3d/newton
bin: standard
Per MPI rank memory allocation (min/avg/max) = 10.87 | 10.88 | 10.90 Mbytes
Step TotEng KinEng PotEng E_vdwl E_coul E_long Temp Press Density
0 548.49163 647.43194 -98.940309 -203.16773 29916.943 -29812.884 300 792.60653 0.55642578
5000 -3289.6503 661.8139 -3951.4642 745.98638 25311.37 -30009.296 306.66415 59.150479 0.99224242
10000 -3264.0347 685.09114 -3949.1258 773.73595 25289.123 -30012.539 317.45011 777.39342 0.98636787
15000 -3251.5551 648.11398 -3899.6691 671.398 25441.786 -30013.334 300.31603 -413.14206 1.016661
20000 -3252.4 689.36359 -3941.7636 737.7343 25333.597 -30013.526 319.42983 -21.174789 0.97535351
25000 -3338.3947 615.37903 -3953.7737 787.76879 25271.858 -30013.71 285.14767 1017.286 0.99756551
30000 -3284.3985 677.49887 -3961.8974 762.04248 25284.899 -30009.413 313.93209 244.39314 0.97967112
35000 -3261.5411 666.45457 -3927.9957 733.96743 25351.027 -30013.599 308.8145 -110.12637 0.96937976
40000 -3234.8532 623.53317 -3858.3863 713.89789 25437.451 -30010.345 288.92605 8.4228945 0.97303537
45000 -3355.6584 635.78023 -3991.4386 847.07484 25173.275 -30012.205 294.60096 1998.0377 1.0016853
50000 -3289.0168 631.74466 -3920.7614 746.01676 25347.251 -30014.586 292.731 72.499979 0.98411892
55000 -3317.0357 623.56712 -3940.6028 761.336 25307.662 -30010.219 288.94178 631.58596 0.99041384
60000 -3235.6514 670.35907 -3906.0105 763.2789 25342.581 -30012.557 310.62372 485.74187 0.96692138
65000 -3289.6272 631.91655 -3921.5438 726.6807 25361.327 -30009.98 292.81065 -39.822331 0.98670912
70000 -3356.7387 634.65207 -3991.3908 759.18886 25260.804 -30011.846 294.0782 -279.67723 0.96104105
75000 -3339.1035 646.63311 -3985.7366 740.57966 25283.92 -30010.741 299.62985 -663.63274 0.97015795
80000 -3315.2349 629.58698 -3944.8219 703.81392 25361.66 -30010.869 291.7312 -274.07447 1.0083118
85000 -3287.7679 646.81739 -3934.5853 715.97889 25360.677 -30011.833 299.71524 -446.21411 0.99175345
90000 -3328.6167 643.38471 -3972.0014 799.56485 25239.915 -30011.926 298.12464 1554.6031 1.0204346
95000 -3309.6011 644.25764 -3953.8587 772.13317 25285.772 -30012.282 298.52913 714.97326 0.99859772
100000 -3234.6909 663.02311 -3897.714 742.089 25372.74 -30012.966 307.22446 626.49142 0.98804377
Loop time of 668.747 on 12 procs for 100000 steps with 1085 atoms
Performance: 12.920 ns/day, 1.858 hours/ns, 149.533 timesteps/s
96.8% CPU use with 12 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 406.74 | 439.26 | 465.65 | 70.5 | 65.68
Bond | 0.087756 | 0.10996 | 0.13947 | 5.4 | 0.02
Kspace | 118.68 | 145.09 | 177.35 | 122.1 | 21.70
Neigh | 10.16 | 10.19 | 10.211 | 0.5 | 1.52
Comm | 27.812 | 30.7 | 32.07 | 27.5 | 4.59
Output | 0.0012463 | 0.0012851 | 0.0016544 | 0.3 | 0.00
Modify | 31.302 | 34.865 | 42.23 | 71.4 | 5.21
Other | | 8.521 | | | 1.27
Nlocal: 90.4167 ave 99 max 79 min
Histogram: 1 1 0 0 2 2 1 1 3 1
Nghost: 3895.83 ave 3960 max 3844 min
Histogram: 2 3 0 1 0 1 1 2 1 1
Neighs: 0.833333 ave 6 max 0 min
Histogram: 10 0 0 0 0 0 1 0 0 1
Total # of neighbors = 10
Ave neighs/atom = 0.0092165899
Ave special neighs/atom = 2.0092166
Neighbor list builds = 4076
Dangerous builds = 1
reset_timestep 0
variable lambda equal ramp(0.0,1.0)
variable q1 equal -0.24*v_lambda
variable q2 equal 0.06*v_lambda
fix ADAPT all adapt/fep 100000 pair lj/cut/tip4p/long/soft lambda 1*2 3*4 v_lambda atom charge 1 v_q1 atom charge 2 v_q2 after yes
thermo_style custom step etotal ke pe evdwl ecoul elong temp press density v_lambda v_q1 v_q2
variable dlambda equal 0.05
variable dq1 equal -0.24*v_dlambda
variable dq2 equal 0.06*v_dlambda
compute FEP all fep ${TK} pair lj/cut/tip4p/long/soft lambda 1*2 3*4 v_dlambda atom charge 1 v_dq1 atom charge 2 v_dq2 volume yes
compute FEP all fep 300 pair lj/cut/tip4p/long/soft lambda 1*2 3*4 v_dlambda atom charge 1 v_dq1 atom charge 2 v_dq2 volume yes
fix FEP all ave/time 20 4000 100000 c_FEP[*] file fep01.fep
dump TRAJ all custom 20000 dump.lammpstrj id mol type element xu yu zu
dump_modify TRAJ element C H O H
run 2000000
PPPM initialization ...
extracting TIP4P info from pair style
using 12-bit tables for long-range coulomb (src/lammps/src/kspace.cpp:339)
G vector (1/distance) = 0.28574247
grid = 15 15 15
stencil order = 5
estimated absolute RMS force accuracy = 0.014533761
estimated relative force accuracy = 4.3767988e-05
using double precision FFTW3
3d grid and FFT values/proc = 2352 450
FEP settings ...
temperature = 300.000000
tail no
lj/cut/tip4p/long/soft lambda 1-2 3-4
1-1 charge
2-2 charge
Neighbor list info ...
update every 1 steps, delay 10 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 12.25
ghost atom cutoff = 12.25
binsize = 6.125, bins = 4 4 4
3 neighbor lists, perpetual/occasional/extra = 3 0 0
(1) pair lj/cut/coul/long, perpetual, skip from (3)
attributes: half, newton on
pair build: skip
stencil: none
bin: none
(2) pair lj/cut/tip4p/long/soft, perpetual, skip from (3)
attributes: half, newton on
pair build: skip
stencil: none
bin: none
(3) neighbor class addition, perpetual
attributes: half, newton on
pair build: half/bin/newton
stencil: half/bin/3d/newton
bin: standard
Per MPI rank memory allocation (min/avg/max) = 12.16 | 12.17 | 12.18 Mbytes
Step TotEng KinEng PotEng E_vdwl E_coul E_long Temp Press Density v_lambda v_q1 v_q2
0 -3234.7709 663.02311 -3897.794 742.089 27095.239 -31735.545 307.22446 699.17165 0.98804377 0 -0 0
5000 -3289.0224 631.33682 -3920.3592 731.99995 27081.876 -31734.814 292.54202 -179.44137 0.99284002 0.0025 -0.0006 0.00015
10000 -3299.1847 676.16148 -3975.3462 708.59345 27050.107 -31734.496 313.31238 -518.83651 0.99067088 0.005 -0.0012 0.0003
15000 -3302.2326 642.06473 -3944.2973 725.78424 27062.847 -31733.405 297.513 -508.19421 0.98063265 0.0075 -0.0018 0.00045
20000 -3296.4091 644.34799 -3940.7571 742.59645 27053.208 -31737.038 298.57099 116.68509 0.99271503 0.01 -0.0024 0.0006
25000 -3329.7456 639.23547 -3968.9811 783.76339 26982.097 -31735.383 296.20201 496.16152 0.97684075 0.0125 -0.003 0.00075
30000 -3290.8879 622.28019 -3913.1681 761.24177 27062.793 -31737.656 288.34545 1324.9373 1.020133 0.015 -0.0036 0.0009
35000 -3258.8976 654.70358 -3913.6012 720.26437 27101.834 -31736.017 303.36945 -12.98411 0.98568197 0.0175 -0.0042 0.00105
40000 -3316.6813 661.50653 -3978.1879 744.40073 27012.054 -31735.136 306.52173 -328.49176 0.98122496 0.02 -0.0048 0.0012
45000 -3328.8398 626.57382 -3955.4137 767.73554 27012.692 -31736.292 290.33499 216.96405 0.98739876 0.0225 -0.0054 0.00135
50000 -3340.9891 657.35839 -3998.3475 830.88061 26901.969 -31731.639 304.59961 1277.8313 0.9894139 0.025 -0.006 0.0015
55000 -3286.6334 664.03418 -3950.6675 693.37215 27091.208 -31735.635 307.69297 -1169.7207 0.97446921 0.0275 -0.0066 0.00165
60000 -3284.1129 649.62828 -3933.7411 742.27197 27058.071 -31734.367 301.01772 217.61495 0.99138135 0.03 -0.0072 0.0018
65000 -3278.0768 656.07593 -3934.1527 802.64294 26995.676 -31733.004 304.00536 1438.6113 0.99167193 0.0325 -0.0078 0.00195
70000 -3257.071 646.97756 -3904.0486 784.2684 27041.692 -31730.549 299.78945 1105.7892 0.97904694 0.035 -0.0084 0.0021
75000 -3302.3867 616.53809 -3918.9247 724.15443 27092.319 -31735.774 285.68474 -257.61941 0.98545045 0.0375 -0.009 0.00225
80000 -3273.1943 666.82395 -3940.0182 710.93871 27084.085 -31735.513 308.98566 -793.05223 0.97840301 0.04 -0.0096 0.0024
85000 -3265.5621 673.58344 -3939.1455 718.18264 27076.343 -31734.09 312.1178 -266.75978 0.99570803 0.0425 -0.0102 0.00255
90000 -3290.206 653.64139 -3943.8474 639.00442 27149.273 -31732.703 302.87727 -2090.0779 0.98198222 0.045 -0.0108 0.0027
95000 -3331.8751 640.75522 -3972.6303 741.43112 27017.822 -31732.42 296.90621 -273.00408 0.98683047 0.0475 -0.0114 0.00285
100000 -3296.8724 646.00751 -3942.8799 692.35792 27098.667 -31734.399 299.33996 -1122.9346 0.96037747 0.05 -0.012 0.003
105000 -3323.043 660.68623 -3983.7293 725.81149 27024.038 -31733.834 306.14163 -478.30302 1.0026308 0.0525 -0.0126 0.00315
110000 -3293.647 644.60735 -3938.2544 773.7496 27021.39 -31733.875 298.69117 434.89378 0.96738408 0.055 -0.0132 0.0033
115000 -3318.6094 617.95787 -3936.5672 711.01122 27087.703 -31735.935 286.34262 -586.06437 0.9963844 0.0575 -0.0138 0.00345
120000 -3318.7136 619.55912 -3938.2728 711.36644 27085.947 -31736.008 287.08459 -174.13483 1.0014176 0.06 -0.0144 0.0036
125000 -3311.5169 619.86219 -3931.3791 740.06281 27062.525 -31734.232 287.22503 95.093205 0.98984372 0.0625 -0.015 0.00375
130000 -3257.5389 660.71935 -3918.2582 743.22185 27073.512 -31735.593 306.15698 691.41882 1.0024 0.065 -0.0156 0.0039
135000 -3234.1888 663.45494 -3897.6437 703.73158 27132.827 -31734.715 307.42456 -485.33417 0.96446007 0.0675 -0.0162 0.00405
140000 -3328.5262 611.78779 -3940.314 758.21124 27032.974 -31731.986 283.4836 291.77762 0.99457944 0.07 -0.0168 0.0042
145000 -3324.8731 622.90615 -3947.7792 753.6117 27033.123 -31735.186 288.6355 343.24728 1.0157261 0.0725 -0.0174 0.00435
150000 -3326.137 623.51882 -3949.6559 781.40757 27001.12 -31732.581 288.9194 379.64232 0.97830823 0.075 -0.018 0.0045
155000 -3267.7496 642.82809 -3910.5777 711.45054 27113.985 -31736.481 297.86672 -292.80529 0.99361431 0.0775 -0.0186 0.00465
160000 -3299.5989 662.74649 -3962.3454 712.8089 27056.164 -31731.87 307.09629 -496.04777 0.99183864 0.08 -0.0192 0.0048
165000 -3329.291 646.32489 -3975.6159 801.98506 26958.482 -31736.573 299.48702 997.42028 0.98284724 0.0825 -0.0198 0.00495
170000 -3318.536 653.82172 -3972.3577 786.6347 26975.18 -31734.52 302.96083 1334.3627 1.0236211 0.085 -0.0204 0.0051
175000 -3325.4627 619.69669 -3945.1594 690.02714 27098.09 -31733.687 287.14834 -919.83628 0.99453856 0.0875 -0.021 0.00525
180000 -3300.3031 636.65018 -3936.9533 745.64489 27054.483 -31737.57 295.00406 219.06021 0.99348984 0.09 -0.0216 0.0054
185000 -3203.2521 676.13783 -3879.3899 745.60713 27109.132 -31734.768 313.30143 414.18855 0.9633435 0.0925 -0.0222 0.00555
190000 -3277.3235 646.22256 -3923.546 751.99067 27057.559 -31733.602 299.43961 413.00249 0.98434955 0.095 -0.0228 0.0057
195000 -3346.2223 647.85098 -3994.0733 767.89014 26969.502 -31731.781 300.19417 -28.507593 0.96832487 0.0975 -0.0234 0.00585
200000 -3300.1935 646.69629 -3946.8898 701.64088 27083.477 -31732.446 299.65912 -707.03161 0.99055336 0.1 -0.024 0.006
205000 -3290.9787 648.02246 -3939.0011 640.17442 27153.624 -31733.433 300.27363 -1956.9384 0.98696639 0.1025 -0.0246 0.00615
210000 -3274.8996 636.56925 -3911.4689 749.14043 27072.195 -31733.439 294.96656 57.011756 0.97283184 0.105 -0.0252 0.0063
215000 -3258.8914 649.62228 -3908.5137 730.52403 27095.576 -31734.9 301.01494 332.42518 1.0045487 0.1075 -0.0258 0.00645
220000 -3281.2031 642.14025 -3923.3434 643.85812 27165.046 -31732.913 297.54799 -1558.401 0.99750231 0.11 -0.0264 0.0066
225000 -3242.8112 669.68595 -3912.4972 740.44086 27078.221 -31731.576 310.31182 392.39792 0.98549974 0.1125 -0.027 0.00675
230000 -3352.6039 612.90242 -3965.5063 808.89628 26961.627 -31736.506 284.00008 1238.5363 0.99442962 0.115 -0.0276 0.0069
235000 -3212.4042 663.39662 -3875.8008 756.43457 27102.946 -31735.628 307.39754 758.23141 0.97498485 0.1175 -0.0282 0.00705
240000 -3257.9461 661.57114 -3919.5172 705.4144 27107.544 -31733.064 306.55167 -204.87272 0.99976854 0.12 -0.0288 0.0072
245000 -3316.5321 647.24561 -3963.7777 786.91081 26980.581 -31731.697 299.91366 1202.2468 1.0222577 0.1225 -0.0294 0.00735
250000 -3341.8246 611.9646 -3953.7892 714.94089 27068.038 -31737.283 283.56553 -911.34644 0.96448073 0.125 -0.03 0.0075
255000 -3254.0891 633.16816 -3887.2572 726.85516 27120.339 -31734.945 293.3906 283.04242 0.98991259 0.1275 -0.0306 0.00765
260000 -3299.1746 651.3513 -3950.5259 696.47895 27089.924 -31737.328 301.81611 -871.73224 1.002751 0.13 -0.0312 0.0078
265000 -3293.1078 657.79434 -3950.9021 755.40667 27026.683 -31733.429 304.80161 360.25773 0.9780128 0.1325 -0.0318 0.00795
270000 -3299.6191 650.52447 -3950.1436 755.41579 27026.359 -31732.393 301.43298 435.04681 1.0014121 0.135 -0.0324 0.0081
275000 -3359.4622 653.89684 -4013.3591 765.0782 26956.42 -31735.291 302.99564 225.63288 1.0067016 0.1375 -0.033 0.00825
280000 -3350.239 629.1103 -3979.3493 747.4181 27008.767 -31736.054 291.51031 50.082819 0.99033851 0.14 -0.0336 0.0084
285000 -3296.0733 631.87144 -3927.9447 767.84143 27039.142 -31735.433 292.78974 440.12726 0.98245521 0.1425 -0.0342 0.00855
290000 -3315.5154 631.97291 -3947.4883 735.6925 27051.956 -31735.594 292.83676 -401.59925 0.97468222 0.145 -0.0348 0.0087
295000 -3329.4745 619.27086 -3948.7453 757.72687 27030.731 -31737.727 286.95102 411.84621 0.99363064 0.1475 -0.0354 0.00885
300000 -3271.6999 644.55528 -3916.2552 770.83041 27046.839 -31734.414 298.66704 841.55452 0.98127197 0.15 -0.036 0.009
305000 -3294.5361 647.43638 -3941.9725 776.74162 27015.144 -31734.455 300.00205 961.02872 0.99335699 0.1525 -0.0366 0.00915
310000 -3313.5724 627.74532 -3941.3178 744.36807 27045.425 -31731.541 290.87782 -41.809135 0.97419513 0.155 -0.0372 0.0093
315000 -3291.8842 660.90248 -3952.7867 749.45524 27033.348 -31736.039 306.24183 125.83355 0.97548669 0.1575 -0.0378 0.00945
320000 -3342.0632 640.02001 -3982.0832 748.47758 27004.346 -31735.393 296.56554 -409.30162 0.98147613 0.16 -0.0384 0.0096
325000 -3263.3328 653.53527 -3916.8681 741.0287 27074.791 -31733.038 302.82809 135.82717 0.98928298 0.1625 -0.039 0.00975
330000 -3298.307 649.21354 -3947.5205 734.02868 27052.27 -31734.229 300.82554 -241.90534 0.99122064 0.165 -0.0396 0.0099
335000 -3311.2598 640.76877 -3952.0286 751.60727 27031.457 -31735.578 296.91249 -431.52514 0.96057138 0.1675 -0.0402 0.01005
340000 -3252.2266 682.23754 -3934.4641 750.29336 27049.403 -31734.459 316.12784 291.37614 0.97683555 0.17 -0.0408 0.0102
345000 -3299.3283 655.32395 -3954.6523 766.1933 27010.242 -31731.463 303.65691 454.23332 0.98480505 0.1725 -0.0414 0.01035
350000 -3298.5888 645.51264 -3944.1014 725.64663 27063.717 -31733.902 299.11065 -306.54333 0.98824029 0.175 -0.042 0.0105
355000 -3328.0776 599.92527 -3928.0029 686.38793 27118.323 -31733.001 277.98687 -465.98865 1.0206672 0.1775 -0.0426 0.01065
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1660000 -3285.1857 678.41086 -3963.5966 757.92725 27011.819 -31735.683 314.35468 384.23549 0.98644252 0.83 -0.1992 0.0498
1665000 -3252.9457 694.14474 -3947.0905 712.30879 27076.129 -31737.086 321.64527 -646.87417 0.96762975 0.8325 -0.1998 0.04995
1670000 -3305.871 619.27179 -3925.1428 737.61963 27073.074 -31737.532 286.95145 60.456806 0.98147319 0.835 -0.2004 0.0501
1675000 -3319.7118 643.14189 -3962.8537 733.15066 27034.087 -31733.898 298.01212 -335.68221 0.97040794 0.8375 -0.201 0.05025
1680000 -3282.2367 648.60366 -3930.8403 697.80758 27106.979 -31737.678 300.54294 -821.93638 0.97624892 0.84 -0.2016 0.0504
1685000 -3349.7097 610.17553 -3959.8852 714.2204 27061.577 -31739.049 282.73653 -608.03338 0.97715725 0.8425 -0.2022 0.05055
1690000 -3276.8907 654.19286 -3931.0836 753.31199 27051.143 -31737.814 303.1328 470.52169 1.0040827 0.845 -0.2028 0.0507
1695000 -3356.5028 624.6713 -3981.1741 721.8757 27033.813 -31738.204 289.45342 -594.09001 0.98851274 0.8475 -0.2034 0.05085
1700000 -3323.8154 626.79844 -3950.6138 744.24997 27041.346 -31738.556 290.43907 24.956241 0.98825494 0.85 -0.204 0.051
1705000 -3242.9786 679.9754 -3922.954 654.28813 27159.104 -31738.27 315.07963 -1251.9879 0.99005714 0.8525 -0.2046 0.05115
1710000 -3311.427 658.82294 -3970.25 721.93221 27043.021 -31738.466 305.27824 -621.60252 0.99919856 0.855 -0.2052 0.0513
1715000 -3321.1662 654.12092 -3975.2871 748.1525 27013.147 -31738.133 303.09946 199.42662 0.98584932 0.8575 -0.2058 0.05145
1720000 -3252.9739 630.37518 -3883.3491 764.34959 27086.819 -31735.934 292.09642 590.47908 0.96914932 0.86 -0.2064 0.0516
1725000 -3355.7913 629.38324 -3985.1745 773.89334 26977.905 -31738.013 291.63679 424.70863 0.98894849 0.8625 -0.207 0.05175
1730000 -3265.7677 679.33001 -3945.0977 741.70993 27044.967 -31735.714 314.78058 -156.32001 0.96682119 0.865 -0.2076 0.0519
1735000 -3329.3178 631.04003 -3960.3579 728.61842 27044.399 -31735.951 292.40449 -617.28914 0.9779626 0.8675 -0.2082 0.05205
1740000 -3276.4172 652.18346 -3928.6006 711.76567 27095.339 -31737.13 302.20171 -608.64098 0.97577767 0.87 -0.2088 0.0522
1745000 -3367.0629 619.23699 -3986.2999 714.70504 27034.572 -31738.184 286.93533 -881.7967 0.98850571 0.8725 -0.2094 0.05235
1750000 -3350.0569 625.65732 -3975.7142 730.88885 27025.633 -31734.804 289.91031 -297.14279 0.9893824 0.875 -0.21 0.0525
1755000 -3338.301 633.65415 -3971.9552 775.28876 26985.334 -31736.591 293.61579 412.3181 0.98557765 0.8775 -0.2106 0.05265
1760000 -3251.9064 667.70039 -3919.6068 795.48855 27019.487 -31738.029 309.39177 1649.3602 0.99301618 0.88 -0.2112 0.0528
1765000 -3297.0745 627.67022 -3924.7447 770.52235 27039.901 -31737.82 290.84303 857.08221 1.0083534 0.8825 -0.2118 0.05295
1770000 -3271.0779 654.10045 -3925.1783 728.58424 27081.992 -31739.013 303.08998 -88.428469 0.98111355 0.885 -0.2124 0.0531
1775000 -3346.407 605.46892 -3951.8759 742.13304 27039.004 -31735.678 280.55563 343.16771 0.99968234 0.8875 -0.213 0.05325
1780000 -3290.5326 661.67685 -3952.2094 760.33686 27023.324 -31738.767 306.60065 402.19944 0.99400686 0.89 -0.2136 0.0534
1785000 -3366.1206 638.40054 -4004.5211 751.36335 26975.592 -31735.746 295.81513 -269.13878 0.97165913 0.8925 -0.2142 0.05355
1790000 -3258.3055 622.65513 -3880.9606 676.40276 27176.903 -31736.935 288.51919 -830.57704 0.98709996 0.895 -0.2148 0.0537
1795000 -3312.0411 642.61352 -3954.6546 750.65851 27027.881 -31736.946 297.76729 340.63468 0.99666772 0.8975 -0.2154 0.05385
1800000 -3340.1029 629.50175 -3969.6047 755.54335 27008.136 -31736.646 291.6917 -362.32152 0.97026562 0.9 -0.216 0.054
1805000 -3239.5085 671.40118 -3910.9097 721.78691 27097.089 -31733.431 311.1066 110.04563 0.96382704 0.9025 -0.2166 0.05415
1810000 -3266.7865 684.65149 -3951.4379 757.10372 27027.29 -31737.399 317.24639 729.96782 1.0049447 0.905 -0.2172 0.0543
1815000 -3333.81 654.59809 -3988.4081 796.79491 26953.479 -31739.86 303.32057 730.60501 0.97490606 0.9075 -0.2178 0.05445
1820000 -3340.6271 615.49021 -3956.1173 771.71374 27012.552 -31741.723 285.19919 565.28134 0.98472964 0.91 -0.2184 0.0546
1825000 -3298.7504 643.65917 -3942.4095 724.49708 27069.231 -31738.213 298.25181 -298.62774 0.96726328 0.9125 -0.219 0.05475
1830000 -3290.9971 666.44583 -3957.443 668.19041 27111.858 -31739.915 308.81045 -1725.0885 0.97076205 0.915 -0.2196 0.0549
1835000 -3254.7179 677.57424 -3932.2922 726.00793 27078.89 -31740.472 313.96701 -300.48129 0.97472843 0.9175 -0.2202 0.05505
1840000 -3259.1244 703.38585 -3962.5102 754.37475 27017.218 -31737.576 325.92731 396.08403 0.99224318 0.92 -0.2208 0.0552
1845000 -3262.1107 624.81539 -3886.9261 719.208 27127.288 -31736.726 289.52019 205.96515 0.98538694 0.9225 -0.2214 0.05535
1850000 -3341.4941 642.35109 -3983.8452 753.00292 27001.459 -31740.126 297.64569 -115.99892 0.97327886 0.925 -0.222 0.0555
1855000 -3319.9831 602.04025 -3922.0234 742.3858 27073.567 -31741.193 278.96689 -7.4449495 0.98220359 0.9275 -0.2226 0.05565
1860000 -3306.9705 679.97559 -3986.9461 826.7132 26917.659 -31735.844 315.07972 995.54048 0.97137783 0.93 -0.2232 0.0558
1865000 -3293.9564 665.98336 -3959.9398 748.22311 27023.987 -31737.053 308.59616 726.98864 1.0142172 0.9325 -0.2238 0.05595
1870000 -3237.963 655.69966 -3893.6627 726.58511 27111.384 -31737.594 303.831 -21.727181 0.97281044 0.935 -0.2244 0.0561
1875000 -3374.6595 619.66759 -3994.3271 726.44658 27013.079 -31737.214 287.13485 -276.33824 1.0045608 0.9375 -0.225 0.05625
1880000 -3277.6826 660.5116 -3938.1942 744.90816 27048.289 -31732.964 306.06071 208.07192 0.98192071 0.94 -0.2256 0.0564
1885000 -3303.7764 641.96127 -3945.7377 700.82697 27086.5 -31737.254 297.46506 -705.0392 0.99500598 0.9425 -0.2262 0.05655
1890000 -3359.8447 609.89199 -3969.7367 700.20487 27066.841 -31738.549 282.60514 -713.02909 1.000895 0.945 -0.2268 0.0567
1895000 -3312.62 622.92578 -3935.5457 770.82145 27029.24 -31739.059 288.6446 1173.4526 1.0063156 0.9475 -0.2274 0.05685
1900000 -3308.4458 669.47072 -3977.9165 760.07479 26994.212 -31736.251 310.21209 -36.382368 0.97889335 0.95 -0.228 0.057
1905000 -3370.217 651.08853 -4021.3056 729.87681 26986.245 -31740.306 301.69435 -892.25427 0.98214988 0.9525 -0.2286 0.05715
1910000 -3297.6045 614.14852 -3911.753 725.77044 27099.174 -31739.96 284.57749 -123.36078 0.97752647 0.955 -0.2292 0.0573
1915000 -3292.1458 626.31854 -3918.4644 710.0067 27105.45 -31738.665 290.2167 -156.06234 0.98706768 0.9575 -0.2298 0.05745
1920000 -3258.6317 683.05625 -3941.688 733.15963 27058.48 -31737.899 316.50721 -331.27328 0.96792 0.96 -0.2304 0.0576
1925000 -3308.3003 643.25078 -3951.5511 734.71807 27042.131 -31733.678 298.06258 -899.10835 0.95191489 0.9625 -0.231 0.05775
1930000 -3275.685 662.2037 -3937.8887 716.74146 27078.527 -31736.562 306.84478 -54.012541 1.0043314 0.965 -0.2316 0.0579
1935000 -3287.9716 633.56371 -3921.5353 746.44129 27064.22 -31736.176 293.57389 1037.5548 1.0147673 0.9675 -0.2322 0.05805
1940000 -3250.1051 685.34381 -3935.4489 774.55817 27023.81 -31739.014 317.56719 1418.383 1.0125818 0.97 -0.2328 0.0582
1945000 -3270.0763 642.65027 -3912.7266 697.73057 27121.723 -31738.163 297.78432 -479.20715 0.98729311 0.9725 -0.2334 0.05835
1950000 -3334.5536 631.76366 -3966.3173 699.41626 27068.476 -31736.481 292.7398 -957.14355 0.97960776 0.975 -0.234 0.0585
1955000 -3276.8103 652.29988 -3929.1102 737.65435 27070.22 -31738.521 302.25565 262.50358 1.0038568 0.9775 -0.2346 0.05865
1960000 -3332.6922 636.66505 -3969.3573 705.90837 27055.869 -31736.072 295.01095 -833.658 0.97874229 0.98 -0.2352 0.0588
1965000 -3341.1449 667.15503 -4008.2999 810.06486 26919.746 -31741.042 309.13907 1144.3005 0.99581793 0.9825 -0.2358 0.05895
1970000 -3271.8283 655.42621 -3927.2545 789.31365 27019.023 -31737.916 303.7043 1151.1363 0.99225241 0.985 -0.2364 0.0591
1975000 -3300.0112 644.65396 -3944.6652 745.21042 27048.054 -31739.819 298.71277 136.49822 0.97832039 0.9875 -0.237 0.05925
1980000 -3335.2376 663.40445 -3998.642 758.8957 26979.416 -31739.34 307.40117 58.763635 0.9885575 0.99 -0.2376 0.0594
1985000 -3325.927 630.5991 -3956.5261 756.54904 27023.943 -31738.779 292.20018 85.287803 0.98050884 0.9925 -0.2382 0.05955
1990000 -3321.7443 646.44654 -3968.1909 721.63898 27049.911 -31741.98 299.54339 -748.66083 0.97438047 0.995 -0.2388 0.0597
1995000 -3330.3216 635.32254 -3965.6441 757.24268 27013.893 -31738.755 294.38888 174.06377 0.99429928 0.9975 -0.2394 0.05985
2000000 -3288.8004 648.87481 -3937.6752 759.37954 27037.886 -31738.632 300.66858 576.95398 0.9825578 1 -0.24 0.06
Loop time of 14303.5 on 12 procs for 2000000 steps with 1085 atoms
Performance: 12.081 ns/day, 1.987 hours/ns, 139.826 timesteps/s
97.0% CPU use with 12 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 8597.9 | 9509.6 | 10454 | 480.9 | 66.48
Bond | 1.7877 | 2.2559 | 2.8669 | 19.7 | 0.02
Kspace | 2141.2 | 3082 | 3987.1 | 842.0 | 21.55
Neigh | 203.37 | 203.86 | 204.5 | 2.2 | 1.43
Comm | 563.03 | 621.88 | 649.79 | 120.5 | 4.35
Output | 0.087605 | 0.088635 | 0.095602 | 0.7 | 0.00
Modify | 621.62 | 690.96 | 836.21 | 314.9 | 4.83
Other | | 192.8 | | | 1.35
Nlocal: 90.4167 ave 96 max 82 min
Histogram: 1 0 1 1 1 1 2 2 1 2
Nghost: 3917.17 ave 3994 max 3861 min
Histogram: 3 0 3 0 1 1 1 2 0 1
Neighs: 0.833333 ave 4 max 0 min
Histogram: 8 0 1 0 0 1 0 1 0 1
Total # of neighbors = 10
Ave neighs/atom = 0.0092165899
Ave special neighs/atom = 2.0092166
Neighbor list builds = 80894
Dangerous builds = 0
# write_restart restart.*.lmp
write_data data.*.lmp
System init for write_data ...
PPPM initialization ...
extracting TIP4P info from pair style
using 12-bit tables for long-range coulomb (src/lammps/src/kspace.cpp:339)
G vector (1/distance) = 0.2855962
grid = 15 15 15
stencil order = 5
estimated absolute RMS force accuracy = 0.014616839
estimated relative force accuracy = 4.4018178e-05
using double precision FFTW3
3d grid and FFT values/proc = 2352 450
Neighbor list info ...
update every 1 steps, delay 10 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 12.25
ghost atom cutoff = 12.25
binsize = 6.125, bins = 4 4 4
3 neighbor lists, perpetual/occasional/extra = 3 0 0
(1) pair lj/cut/coul/long, perpetual, skip from (3)
attributes: half, newton on
pair build: skip
stencil: none
bin: none
(2) pair lj/cut/tip4p/long/soft, perpetual, skip from (3)
attributes: half, newton on
pair build: skip
stencil: none
bin: none
(3) neighbor class addition, perpetual
attributes: half, newton on
pair build: half/bin/newton
stencil: half/bin/3d/newton
bin: standard
Total wall time: 4:09:32