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Axel Kohlmeyer b8e84d0070 Merge pull request #2442 from ProfessorMiller/master 
Create logic in parsing KIM Simulator Models to treat periodic vs. aperiodic simulations differently
2020-10-27 11:44:20 -04:00
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ASPHERE
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BODY
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CLASS2
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COLLOID
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COMPRESS
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CORESHELL
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DEPEND
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DIPOLE
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fmt
update bundled fmtlib to version 7.0.3
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GPU
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GRANULAR
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KIM
eliminate TABs
2020-10-27 00:39:52 -04:00
KOKKOS
Merge pull request #2444 from stanmoore1/kk_global_dof
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KSPACE
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LATTE
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MAKE
Remove makefiles for obsolete machines and configurations or that are redundant
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MANYBODY
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MC
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MESSAGE
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MISC
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MLIAP
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MOLECULE
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MPIIO
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MSCG
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OPT
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PERI
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POEMS
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PYTHON
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QEQ
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REPLICA
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RIGID
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SHOCK
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SNAP
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SPIN
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SRD
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STUBS
T2345: Walking back nullptr changes in #defines in STUBS/mpi.h
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USER-MISC
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USER-OMP
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USER-REACTION
update email
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USER-SCAFACOS
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USER-SDPD
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USER-SMD
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USER-SMTBQ
update URLs from http:// to https://
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USER-SPH
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VORONOI
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.gitignore
include math_eigen.h, remove it from .gitignore
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accelerator_kokkos.h
Finalize Kokkos on error exit
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accelerator_omp.h
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angle_deprecated.cpp
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angle_deprecated.h
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angle_hybrid.cpp
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angle_hybrid.h
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angle_zero.cpp
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angle_zero.h
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angle.cpp
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angle.h
merged in current master
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atom_map.cpp
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atom_map.h
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atom_masks.h
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atom_vec_atomic.cpp
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atom_vec_atomic.h
big update
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atom_vec_body.cpp
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atom_vec_body.h
consistently return "memory_usage" as double.
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atom_vec_charge.cpp
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atom_vec_charge.h
big update
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atom_vec_ellipsoid.cpp
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atom_vec_ellipsoid.h
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atom_vec_hybrid.cpp
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atom_vec_hybrid.h
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atom_vec_line.cpp
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atom_vec_line.h
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atom_vec_sphere.cpp
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atom_vec_sphere.h
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atom_vec_tri.cpp
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atom_vec_tri.h
consistently return "memory_usage" as double.
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atom_vec.cpp
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atom_vec.h
Merge branch 'master' into symbolic-atom-constants
2020-09-15 14:58:13 -04:00
atom.cpp
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atom.h
Add datatype introspection methods to library
2020-09-17 13:43:43 -04:00
balance.cpp
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balance.h
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body.cpp
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body.h
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
bond_deprecated.cpp
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bond_deprecated.h
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bond_hybrid.cpp
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bond_hybrid.h
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bond_zero.cpp
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bond_zero.h
big update
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bond.cpp
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bond.h
Manually resolve two rebase conflicts.
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change_box.cpp
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change_box.h
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citeme.cpp
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citeme.h
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comm_brick.cpp
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comm_brick.h
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comm_tiled.cpp
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comm_tiled.h
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comm.cpp
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comm.h
Merge pull request #2358 from eagunn/iss2345
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compute_adf.cpp
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compute_adf.h
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compute_aggregate_atom.cpp
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compute_aggregate_atom.h
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compute_angle_local.cpp
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compute_angle_local.h
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compute_angle.cpp
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compute_angle.h
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compute_angmom_chunk.cpp
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compute_angmom_chunk.h
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compute_bond_local.cpp
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compute_bond_local.h
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compute_bond.cpp
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compute_bond.h
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compute_centro_atom.cpp
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compute_centro_atom.h
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compute_centroid_stress_atom.cpp
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compute_centroid_stress_atom.h
merged in current master
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compute_chunk_atom.cpp
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compute_chunk_atom.h
fix up some comments
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compute_chunk_spread_atom.cpp
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compute_chunk_spread_atom.h
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compute_cluster_atom.cpp
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compute_cluster_atom.h
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compute_cna_atom.cpp
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compute_cna_atom.h
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compute_com_chunk.cpp
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compute_com_chunk.h
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compute_com.cpp
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compute_com.h
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compute_contact_atom.cpp
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compute_contact_atom.h
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compute_coord_atom.cpp
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compute_coord_atom.h
big update
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compute_deprecated.cpp
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compute_deprecated.h
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compute_dihedral_local.cpp
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compute_dihedral_local.h
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compute_dihedral.cpp
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compute_dihedral.h
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compute_dipole_chunk.cpp
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compute_dipole_chunk.h
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compute_displace_atom.cpp
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compute_displace_atom.h
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compute_erotate_sphere_atom.cpp
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compute_erotate_sphere_atom.h
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compute_erotate_sphere.cpp
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compute_erotate_sphere.h
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compute_fragment_atom.cpp
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compute_fragment_atom.h
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compute_global_atom.cpp
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compute_global_atom.h
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compute_group_group.cpp
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compute_group_group.h
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compute_gyration_chunk.cpp
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compute_gyration_chunk.h
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compute_gyration.cpp
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compute_gyration.h
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compute_heat_flux.cpp
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compute_heat_flux.h
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compute_hexorder_atom.cpp
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compute_hexorder_atom.h
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compute_improper_local.cpp
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compute_improper_local.h
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compute_improper.cpp
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compute_improper.h
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compute_inertia_chunk.cpp
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compute_inertia_chunk.h
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compute_ke_atom.cpp
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compute_ke_atom.h
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compute_ke.cpp
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compute_ke.h
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compute_msd_chunk.cpp
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compute_msd_chunk.h
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compute_msd.cpp
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compute_msd.h
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compute_omega_chunk.cpp
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compute_omega_chunk.h
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compute_orientorder_atom.cpp
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compute_orientorder_atom.h
Add loop chunking option to compute_orientorder_atom_kokkos
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compute_pair_local.cpp
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compute_pair_local.h
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compute_pair.cpp
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compute_pair.h
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compute_pe_atom.cpp
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compute_pe_atom.h
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compute_pe.cpp
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compute_pe.h
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compute_pressure.cpp
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compute_pressure.h
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compute_property_atom.cpp
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compute_property_atom.h
big update
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compute_property_chunk.cpp
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compute_property_chunk.h
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compute_property_local.cpp
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compute_property_local.h
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compute_rdf.cpp
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compute_rdf.h
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compute_reduce_chunk.cpp
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compute_reduce_chunk.h
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compute_reduce_region.cpp
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compute_reduce_region.h
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compute_reduce.cpp
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compute_reduce.h
IWYU based include statement cleanup
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compute_slice.cpp
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compute_slice.h
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compute_stress_atom.cpp
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compute_stress_atom.h
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compute_temp_chunk.cpp
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compute_temp_chunk.h
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compute_temp_com.cpp
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compute_temp_com.h
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compute_temp_deform.cpp
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compute_temp_deform.h
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compute_temp_partial.cpp
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compute_temp_partial.h
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compute_temp_profile.cpp
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compute_temp_profile.h
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compute_temp_ramp.cpp
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compute_temp_ramp.h
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compute_temp_region.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
compute_temp_region.h
…
compute_temp_sphere.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
compute_temp_sphere.h
…
compute_temp.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
compute_temp.h
…
compute_torque_chunk.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
compute_torque_chunk.h
…
compute_vacf.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
compute_vacf.h
…
compute_vcm_chunk.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
compute_vcm_chunk.h
…
compute.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
compute.h
big update
2020-08-24 16:54:16 +02:00
create_atoms.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
create_atoms.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
create_bonds.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
create_bonds.h
merged in current master
2020-01-13 10:34:31 -07:00
create_box.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
create_box.h
…
delete_atoms.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
delete_atoms.h
…
delete_bonds.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
delete_bonds.h
…
Depend.sh
big update
2020-08-24 16:54:16 +02:00
deprecated.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
deprecated.h
big update
2020-08-24 16:54:16 +02:00
dihedral_deprecated.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dihedral_deprecated.h
…
dihedral_hybrid.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dihedral_hybrid.h
…
dihedral_zero.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dihedral_zero.h
…
dihedral.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dihedral.h
merged in current master
2020-01-13 10:34:31 -07:00
displace_atoms.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
displace_atoms.h
…
domain.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
domain.h
more include file updates found by iwyu
2020-09-02 22:52:22 -04:00
dump_atom.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_atom.h
big update
2020-08-24 16:54:16 +02:00
dump_cfg.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_cfg.h
…
dump_custom.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_custom.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
dump_dcd.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_dcd.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
dump_deprecated.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_deprecated.h
…
dump_image.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_image.h
remove inactive code and documentation for dump image persp option
2020-09-28 08:19:26 -04:00
dump_local.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_local.h
merged in current master
2020-01-13 10:34:31 -07:00
dump_movie.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_movie.h
…
dump_xyz.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump_xyz.h
…
dump.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
dump.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
error.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
error.h
more include file updates
2020-09-02 21:44:04 -04:00
exceptions.h
big update
2020-08-24 16:54:16 +02:00
Fetch.sh
big update
2020-08-24 16:54:16 +02:00
file_writer.h
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
finish.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
finish.h
…
fix_adapt.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_adapt.h
big update
2020-08-24 16:54:16 +02:00
fix_addforce.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_addforce.h
…
fix_ave_atom.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_ave_atom.h
…
fix_ave_chunk.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_ave_chunk.h
…
fix_ave_correlate.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_ave_correlate.h
…
fix_ave_histo_weight.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_ave_histo_weight.h
…
fix_ave_histo.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_ave_histo.h
…
fix_ave_time.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_ave_time.h
…
fix_aveforce.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_aveforce.h
…
fix_balance.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_balance.h
…
fix_box_relax.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_box_relax.h
…
fix_controller.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_controller.h
…
fix_deform.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_deform.h
…
fix_deprecated.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_deprecated.h
…
fix_drag.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_drag.h
…
fix_dt_reset.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_dt_reset.h
…
fix_dummy.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_dummy.h
big update
2020-08-24 16:54:16 +02:00
fix_enforce2d.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_enforce2d.h
…
fix_external.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_external.h
…
fix_gravity.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_gravity.h
merged in current master
2020-01-13 10:34:31 -07:00
fix_group.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_group.h
…
fix_halt.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_halt.h
add diskfree check to fix halt
2020-03-09 16:23:20 -04:00
fix_heat.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_heat.h
…
fix_indent.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_indent.h
…
fix_langevin.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_langevin.h
merged in current master
2020-01-13 10:34:31 -07:00
fix_lineforce.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_lineforce.h
…
fix_minimize.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_minimize.h
…
fix_momentum.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_momentum.h
…
fix_move.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_move.h
…
fix_neigh_history.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_neigh_history.h
…
fix_nh_sphere.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nh_sphere.h
…
fix_nh.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nh.h
some more IWYU tweaks
2020-09-04 09:23:20 -04:00
fix_nph_sphere.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nph_sphere.h
…
fix_nph.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nph.h
…
fix_npt_sphere.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_npt_sphere.h
…
fix_npt.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_npt.h
…
fix_numdiff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_numdiff.h
Removed misleading doc information and included errors
2020-03-10 16:12:02 -06:00
fix_nve_limit.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nve_limit.h
…
fix_nve_noforce.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nve_noforce.h
…
fix_nve_sphere.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nve_sphere.h
…
fix_nve.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nve.h
…
fix_nvt_sllod.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nvt_sllod.h
…
fix_nvt_sphere.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nvt_sphere.h
…
fix_nvt.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_nvt.h
…
fix_planeforce.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_planeforce.h
…
fix_press_berendsen.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_press_berendsen.h
…
fix_print.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_print.h
merged in current master
2020-01-13 10:34:31 -07:00
fix_property_atom.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_property_atom.h
…
fix_read_restart.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_read_restart.h
…
fix_recenter.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_recenter.h
…
fix_respa.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_respa.h
…
fix_restrain.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_restrain.h
big update
2020-08-24 16:54:16 +02:00
fix_setforce.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_setforce.h
big update
2020-08-24 16:54:16 +02:00
fix_spring_chunk.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_spring_chunk.h
big update
2020-08-24 16:54:16 +02:00
fix_spring_rg.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_spring_rg.h
big update
2020-08-24 16:54:16 +02:00
fix_spring_self.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_spring_self.h
…
fix_spring.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_spring.h
…
fix_store_force.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_store_force.h
…
fix_store_state.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_store_state.h
…
fix_store.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_store.h
…
fix_temp_berendsen.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_temp_berendsen.h
big update
2020-08-24 16:54:16 +02:00
fix_temp_csld.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_temp_csld.h
big update
2020-08-24 16:54:16 +02:00
fix_temp_csvr.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_temp_csvr.h
big update
2020-08-24 16:54:16 +02:00
fix_temp_rescale.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_temp_rescale.h
big update
2020-08-24 16:54:16 +02:00
fix_tmd.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_tmd.h
…
fix_vector.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_vector.h
…
fix_viscous.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_viscous.h
…
fix_wall_harmonic.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_wall_harmonic.h
…
fix_wall_lj93.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_wall_lj93.h
…
fix_wall_lj126.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_wall_lj126.h
…
fix_wall_lj1043.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_wall_lj1043.h
…
fix_wall_morse.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_wall_morse.h
…
fix_wall_reflect.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_wall_reflect.h
fix whitespace issues
2020-01-13 22:47:06 -05:00
fix_wall_region.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_wall_region.h
…
fix_wall.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix_wall.h
…
fix.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
fix.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
fmtlib_format.cpp
big update
2020-08-24 16:54:16 +02:00
fmtlib_os.cpp
big update
2020-08-24 16:54:16 +02:00
force.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
force.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
group.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
group.h
more include file updates
2020-09-02 21:44:04 -04:00
hashlittle.cpp
update URLs from http:// to https://
2020-10-21 17:04:23 -04:00
hashlittle.h
use #include <cstdint> now that we require C++11
2020-04-21 19:31:57 -04:00
image.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
image.h
…
imbalance_group.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
imbalance_group.h
big update
2020-08-24 16:54:16 +02:00
imbalance_neigh.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
imbalance_neigh.h
big update
2020-08-24 16:54:16 +02:00
imbalance_store.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
imbalance_store.h
big update
2020-08-24 16:54:16 +02:00
imbalance_time.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
imbalance_time.h
big update
2020-08-24 16:54:16 +02:00
imbalance_var.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
imbalance_var.h
big update
2020-08-24 16:54:16 +02:00
imbalance.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
imbalance.h
big update
2020-08-24 16:54:16 +02:00
improper_deprecated.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
improper_deprecated.h
…
improper_hybrid.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
improper_hybrid.h
…
improper_zero.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
improper_zero.h
…
improper.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
improper.h
merged in current master
2020-01-13 10:34:31 -07:00
info.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
info.h
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
input.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
input.h
more include file updates
2020-09-02 21:44:04 -04:00
Install.sh
…
integrate.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
integrate.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
irregular.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
irregular.h
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
kspace_deprecated.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
kspace_deprecated.h
…
kspace.cpp
ad few more manual updates of outdated, mistyped or no longer available URLs
2020-10-21 17:19:33 -04:00
kspace.h
big update
2020-08-24 16:54:16 +02:00
lammps.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
lammps.h
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
lattice.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
lattice.h
big update
2020-08-24 16:54:16 +02:00
library.cpp
Merge pull request #2439 from akohlmey/collected-small-changes
2020-10-22 17:23:49 -04:00
library.h
simplify code. print warnings only on MPI rank 0. update parameter names
2020-10-22 15:35:45 -04:00
lmppython.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
lmppython.h
big update
2020-08-24 16:54:16 +02:00
lmprestart.h
big update
2020-08-24 16:54:16 +02:00
lmptype.h
Merge branch 'master' into collected-small-changes
2020-09-18 16:11:47 -04:00
lmpwindows.h
…
main.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
Make.sh
big update
2020-08-24 16:54:16 +02:00
Makefile
have make yes/no package terminate with error status for non-existing packages
2020-09-21 07:09:13 -04:00
Makefile.list
big update
2020-08-24 16:54:16 +02:00
Makefile.package.empty
…
Makefile.package.settings.empty
…
Makefile.print
include options to link to the LAMMPS library in mode=print output
2020-04-08 18:36:30 -04:00
math_complex.h
…
math_const.h
…
math_eigen_impl.h
make a small change to math_eigen_impl.h
2020-10-05 22:32:15 +09:00
math_eigen.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
math_eigen.h
update copyright headers to match LAMMPS' conventions
2020-09-16 17:35:58 -04:00
math_extra.cpp
ad few more manual updates of outdated, mistyped or no longer available URLs
2020-10-21 17:19:33 -04:00
math_extra.h
updated all code in LAMMPS to use the open-source "math_eigen.h" instead of "math_extra.h". Code in "lib" now uses its own abbreviated local version of the "math_eigen.h" file (which is named "jacobi_pd.h"), since it is not clear how code from "lib/" can access the code in "src/"
2020-09-05 01:39:27 -07:00
math_special.cpp
update outdated URLs
2020-10-21 17:03:46 -04:00
math_special.h
…
math_vector.h
…
memory.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
memory.h
Merge pull request #2358 from eagunn/iss2345
2020-09-15 17:41:24 -04:00
min_cg.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
min_cg.h
…
min_fire_old.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
min_fire_old.h
Change fire to fire/old and fire2 to fire. Implement normstyle in fire. Update author affiliation.
2020-01-28 14:51:23 +01:00
min_fire.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
min_fire.h
special v evaluation to limite dtv each time v is zeroed
2020-03-05 11:39:48 +01:00
min_hftn.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
min_hftn.h
…
min_linesearch.cpp
ad few more manual updates of outdated, mistyped or no longer available URLs
2020-10-21 17:19:33 -04:00
min_linesearch.h
…
min_quickmin.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
min_quickmin.h
…
min_sd.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
min_sd.h
…
min.cpp
ad few more manual updates of outdated, mistyped or no longer available URLs
2020-10-21 17:19:33 -04:00
min.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
minimize.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
minimize.h
…
modify.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
modify.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
molecule.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
molecule.h
molecule: revert overzealous error checking
2020-09-23 11:23:10 -04:00
mpiio.h
big update
2020-08-24 16:54:16 +02:00
my_page.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
my_page.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
my_pool_chunk.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
my_pool_chunk.h
fix minor issues
2020-09-08 16:43:10 -04:00
nbin_standard.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nbin_standard.h
…
nbin.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nbin.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
neigh_list.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
neigh_list.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
neigh_request.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
neigh_request.h
…
neighbor.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
neighbor.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
npair_copy.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_copy.h
…
npair_full_bin_atomonly.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_full_bin_atomonly.h
…
npair_full_bin_ghost.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_full_bin_ghost.h
…
npair_full_bin.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_full_bin.h
…
npair_full_multi.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_full_multi.h
…
npair_full_nsq_ghost.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_full_nsq_ghost.h
…
npair_full_nsq.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_full_nsq.h
…
npair_half_bin_atomonly_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_bin_atomonly_newton.h
…
npair_half_bin_newtoff_ghost.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_bin_newtoff_ghost.h
…
npair_half_bin_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_bin_newtoff.h
…
npair_half_bin_newton_tri.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_bin_newton_tri.h
…
npair_half_bin_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_bin_newton.h
…
npair_half_multi_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_multi_newtoff.h
…
npair_half_multi_newton_tri.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_multi_newton_tri.h
…
npair_half_multi_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_multi_newton.h
…
npair_half_nsq_newtoff_ghost.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_nsq_newtoff_ghost.h
…
npair_half_nsq_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_nsq_newtoff.h
…
npair_half_nsq_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_nsq_newton.h
…
npair_half_respa_bin_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_respa_bin_newtoff.h
…
npair_half_respa_bin_newton_tri.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_respa_bin_newton_tri.h
…
npair_half_respa_bin_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_respa_bin_newton.h
…
npair_half_respa_nsq_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_respa_nsq_newtoff.h
…
npair_half_respa_nsq_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_respa_nsq_newton.h
…
npair_half_size_bin_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_size_bin_newtoff.h
…
npair_half_size_bin_newton_tri.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_size_bin_newton_tri.h
…
npair_half_size_bin_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_size_bin_newton.h
…
npair_half_size_nsq_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_size_nsq_newtoff.h
…
npair_half_size_nsq_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_half_size_nsq_newton.h
…
npair_halffull_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_halffull_newtoff.h
…
npair_halffull_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_halffull_newton.h
…
npair_skip_respa.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_skip_respa.h
…
npair_skip_size_off2on_oneside.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_skip_size_off2on_oneside.h
…
npair_skip_size_off2on.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_skip_size_off2on.h
…
npair_skip_size.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_skip_size.h
…
npair_skip.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair_skip.h
…
npair.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
npair.h
…
nstencil_full_bin_2d.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_full_bin_2d.h
…
nstencil_full_bin_3d.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_full_bin_3d.h
…
nstencil_full_ghost_bin_2d.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_full_ghost_bin_2d.h
…
nstencil_full_ghost_bin_3d.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_full_ghost_bin_3d.h
…
nstencil_full_multi_2d.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_full_multi_2d.h
…
nstencil_full_multi_3d.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_full_multi_3d.h
…
nstencil_half_bin_2d_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_bin_2d_newtoff.h
…
nstencil_half_bin_2d_newton_tri.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_bin_2d_newton_tri.h
…
nstencil_half_bin_2d_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_bin_2d_newton.h
…
nstencil_half_bin_3d_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_bin_3d_newtoff.h
…
nstencil_half_bin_3d_newton_tri.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_bin_3d_newton_tri.h
…
nstencil_half_bin_3d_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_bin_3d_newton.h
…
nstencil_half_ghost_bin_2d_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_ghost_bin_2d_newtoff.h
…
nstencil_half_ghost_bin_3d_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_ghost_bin_3d_newtoff.h
…
nstencil_half_multi_2d_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_multi_2d_newtoff.h
…
nstencil_half_multi_2d_newton_tri.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_multi_2d_newton_tri.h
…
nstencil_half_multi_2d_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_multi_2d_newton.h
…
nstencil_half_multi_3d_newtoff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_multi_3d_newtoff.h
…
nstencil_half_multi_3d_newton_tri.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_multi_3d_newton_tri.h
…
nstencil_half_multi_3d_newton.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil_half_multi_3d_newton.h
…
nstencil.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
nstencil.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
ntopo_angle_all.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_angle_all.h
…
ntopo_angle_partial.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_angle_partial.h
…
ntopo_angle_template.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_angle_template.h
…
ntopo_bond_all.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_bond_all.h
…
ntopo_bond_partial.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_bond_partial.h
…
ntopo_bond_template.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_bond_template.h
…
ntopo_dihedral_all.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_dihedral_all.h
…
ntopo_dihedral_partial.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_dihedral_partial.h
…
ntopo_dihedral_template.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_dihedral_template.h
…
ntopo_improper_all.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_improper_all.h
…
ntopo_improper_partial.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_improper_partial.h
…
ntopo_improper_template.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo_improper_template.h
…
ntopo.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
ntopo.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
omp_compat.h
fix typo
2020-09-28 12:52:32 -04:00
output.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
output.h
fix up some comments
2020-09-14 12:05:45 -06:00
pack.h
…
Package.sh
remove tab and trailing whitespace
2020-03-27 22:25:27 -04:00
pair_beck.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_beck.h
…
pair_born_coul_dsf.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_born_coul_dsf.h
…
pair_born_coul_wolf.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_born_coul_wolf.h
…
pair_born.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_born.h
…
pair_buck_coul_cut.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_buck_coul_cut.h
…
pair_buck.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_buck.h
…
pair_coul_cut.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_coul_cut.h
…
pair_coul_debye.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_coul_debye.h
…
pair_coul_dsf.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_coul_dsf.h
…
pair_coul_streitz.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_coul_streitz.h
big update
2020-08-24 16:54:16 +02:00
pair_coul_wolf.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_coul_wolf.h
…
pair_deprecated.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_deprecated.h
…
pair_dpd_tstat.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_dpd_tstat.h
…
pair_dpd.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_dpd.h
…
pair_gauss.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_gauss.h
…
pair_hybrid_overlay.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_hybrid_overlay.h
separate out svector handling to new virtual functions, so it can be handled differently for pair styles hybrid and hybrid/overlay
2019-09-12 12:30:22 -04:00
pair_hybrid.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_hybrid.h
merged in current master
2020-01-13 10:34:31 -07:00
pair_lj96_cut.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj96_cut.h
…
pair_lj_cubic.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_cubic.h
…
pair_lj_cut_coul_cut.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_cut_coul_cut.h
…
pair_lj_cut_coul_debye.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_cut_coul_debye.h
…
pair_lj_cut_coul_dsf.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_cut_coul_dsf.h
…
pair_lj_cut_coul_wolf.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_cut_coul_wolf.h
…
pair_lj_cut.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_cut.h
…
pair_lj_expand.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_expand.h
…
pair_lj_gromacs_coul_gromacs.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_gromacs_coul_gromacs.h
…
pair_lj_gromacs.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_gromacs.h
…
pair_lj_smooth_linear.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_smooth_linear.h
…
pair_lj_smooth.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_lj_smooth.h
…
pair_mie_cut.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_mie_cut.h
…
pair_morse.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_morse.h
…
pair_soft.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_soft.h
…
pair_table.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_table.h
…
pair_ufm.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_ufm.h
big update
2020-08-24 16:54:16 +02:00
pair_yukawa.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_yukawa.h
…
pair_zbl.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_zbl.h
big update
2020-08-24 16:54:16 +02:00
pair_zero.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair_zero.h
Fix typo
2020-03-14 13:57:48 +09:00
pair.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
pair.h
Manually resolve two rebase conflicts.
2020-09-14 12:04:51 -06:00
pointers.h
rephrase
2020-09-23 15:45:29 -04:00
potential_file_reader.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
potential_file_reader.h
some more second pass cleanup
2020-09-04 00:46:23 -04:00
procmap.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
procmap.h
…
Purge.list
move merge sort to utils namespace
2020-09-06 17:38:53 -04:00
random_mars.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
random_mars.h
big update
2020-08-24 16:54:16 +02:00
random_park.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
random_park.h
…
rcb.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
rcb.h
consistently return "memory_usage" as double.
2020-09-15 01:59:58 -04:00
read_data.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
read_data.h
big update
2020-08-24 16:54:16 +02:00
read_dump.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
read_dump.h
change isReaderParallel flag to parallel and generally adapt more to LAMMPS programming style
2020-01-20 09:20:42 -05:00
read_restart.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
read_restart.h
multiple consistency improvements for restart files
2020-01-31 10:49:59 -05:00
reader_native.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
reader_native.h
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
reader_xyz.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
reader_xyz.h
…
reader.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
reader.h
…
region_block.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_block.h
…
region_cone.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_cone.h
…
region_cylinder.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_cylinder.h
…
region_deprecated.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_deprecated.h
…
region_intersect.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_intersect.h
…
region_plane.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_plane.h
…
region_prism.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_prism.h
…
region_sphere.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_sphere.h
…
region_union.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region_union.h
…
region.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
region.h
…
replicate.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
replicate.h
…
rerun.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
rerun.h
…
reset_atom_ids.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
reset_atom_ids.h
big update
2020-08-24 16:54:16 +02:00
reset_mol_ids.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
reset_mol_ids.h
rechecking some corefiles with IWYU after the many updates
2020-09-03 15:28:07 -04:00
respa.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
respa.h
…
run.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
run.h
…
set.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
set.h
simplify variable lookup in set command
2020-09-19 16:04:09 -04:00
special.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
special.h
…
suffix.h
Add Kokkos version of compute orientorder/atom
2020-02-24 13:27:40 -07:00
table_file_reader.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
table_file_reader.h
big update
2020-08-24 16:54:16 +02:00
text_file_reader.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
text_file_reader.h
update formatting style to be more consistent
2020-09-21 02:04:58 -04:00
thermo.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
thermo.h
big update
2020-08-24 16:54:16 +02:00
timer.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
timer.h
…
tokenizer.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
tokenizer.h
IWYU based include statement cleanup
2020-09-02 17:39:34 -04:00
universe.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
universe.h
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
update.cpp
ad few more manual updates of outdated, mistyped or no longer available URLs
2020-10-21 17:19:33 -04:00
update.h
Merge branch 'master' into consistent-memory-usage
2020-09-15 12:25:16 -04:00
utils.cpp
add utils::path_dirname() to complement utils::path_basename()
2020-10-23 20:40:18 -04:00
utils.h
add utils::path_dirname() to complement utils::path_basename()
2020-10-23 20:40:18 -04:00
variable.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
variable.h
add support for variable names to id introspection in library interface
2020-10-04 06:01:26 -04:00
velocity.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
velocity.h
…
verlet.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
verlet.h
…
version.h
step version strings for next patch release (and stable release candidate)
2020-10-22 15:36:58 -04:00
write_coeff.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
write_coeff.h
…
write_data.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
write_data.h
more IWYU updates
2020-09-03 00:22:09 -04:00
write_dump.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
write_dump.h
…
write_restart.cpp
use https://lammps.sandia.gov based URLs consistently
2020-10-21 16:45:30 -04:00
write_restart.h
more IWYU updates
2020-09-03 00:22:09 -04:00