Files
lammps/lib/colvars/colvarproxy_tcl.cpp
Giacomo Fiorin 85c394453c Update Colvars to version 2020-07-07
This update contains several fixes and small new features or usability
improvements.  Descriptions and authorship information can be accessed from
the pull requests listed below.

Skip the zero-step also when multiple run commands are executed in sequence (@giacomofiorin)
https://github.com/Colvars/colvars/pull/357

Do not accumulate data at step 0 (@giacomofiorin)
https://github.com/Colvars/colvars/pull/345

Support for symmetry permutations of atoms in RMSD (@jhenin)
https://github.com/Colvars/colvars/pull/344

Detect new grid parameters (@jhenin)
https://github.com/Colvars/colvars/pull/341

Only access the output streams in non-threaded regions (@giacomofiorin)
https://github.com/Colvars/colvars/pull/338

Fix incomplete setting of default colvarsRestartFrequency (@giacomofiorin)
https://github.com/Colvars/colvars/pull/334

Fix typo (@e-kwsm)
https://github.com/Colvars/colvars/pull/333

Convert the input keyword to lowercase in read_state_data_key (@HanatoK)
https://github.com/Colvars/colvars/pull/332

Implement reflecting b.c. for ext Lagrangian (@jhenin)
https://github.com/Colvars/colvars/pull/329
2020-09-09 18:19:21 -04:00

161 lines
4.4 KiB
C++

// -*- c++ -*-
// This file is part of the Collective Variables module (Colvars).
// The original version of Colvars and its updates are located at:
// https://github.com/Colvars/colvars
// Please update all Colvars source files before making any changes.
// If you wish to distribute your changes, please submit them to the
// Colvars repository at GitHub.
#include <sstream>
#if defined(NAMD_TCL) || defined(VMDTCL)
#define COLVARS_TCL
#include <tcl.h>
#endif
#include "colvarmodule.h"
#include "colvarproxy.h"
#include "colvarproxy_tcl.h"
#include "colvaratoms.h"
colvarproxy_tcl::colvarproxy_tcl()
{
tcl_interp_ = NULL;
}
colvarproxy_tcl::~colvarproxy_tcl()
{
}
void colvarproxy_tcl::init_tcl_pointers()
{
cvm::error("Error: Tcl support is not available in this build.\n",
COLVARS_NOT_IMPLEMENTED);
}
char const *colvarproxy_tcl::tcl_get_str(void *obj)
{
#if defined(COLVARS_TCL)
return Tcl_GetString(reinterpret_cast<Tcl_Obj *>(obj));
#else
return NULL;
#endif
}
int colvarproxy_tcl::tcl_run_force_callback()
{
#if defined(COLVARS_TCL)
Tcl_Interp *const tcl_interp =
reinterpret_cast<Tcl_Interp *>(get_tcl_interp());
std::string cmd = std::string("calc_colvar_forces ")
+ cvm::to_str(cvm::step_absolute());
int err = Tcl_Eval(tcl_interp, cmd.c_str());
if (err != TCL_OK) {
cvm::log(std::string("Error while executing calc_colvar_forces:\n"));
cvm::error(Tcl_GetStringResult(tcl_interp));
return COLVARS_ERROR;
}
return cvm::get_error();
#else
return COLVARS_NOT_IMPLEMENTED;
#endif
}
int colvarproxy_tcl::tcl_run_colvar_callback(
std::string const &name,
std::vector<const colvarvalue *> const &cvc_values,
colvarvalue &value)
{
#if defined(COLVARS_TCL)
Tcl_Interp *const tcl_interp =
reinterpret_cast<Tcl_Interp *>(get_tcl_interp());
size_t i;
std::string cmd = std::string("calc_") + name;
for (i = 0; i < cvc_values.size(); i++) {
cmd += std::string(" {") + (*(cvc_values[i])).to_simple_string() +
std::string("}");
}
int err = Tcl_Eval(tcl_interp, cmd.c_str());
const char *result = Tcl_GetStringResult(tcl_interp);
if (err != TCL_OK) {
return cvm::error(std::string("Error while executing ")
+ cmd + std::string(":\n") +
std::string(Tcl_GetStringResult(tcl_interp)),
COLVARS_ERROR);
}
std::istringstream is(result);
if (value.from_simple_string(is.str()) != COLVARS_OK) {
cvm::log("Error parsing colvar value from script:");
cvm::error(result);
return COLVARS_ERROR;
}
return cvm::get_error();
#else
return COLVARS_NOT_IMPLEMENTED;
#endif
}
int colvarproxy_tcl::tcl_run_colvar_gradient_callback(
std::string const &name,
std::vector<const colvarvalue *> const &cvc_values,
std::vector<cvm::matrix2d<cvm::real> > &gradient)
{
#if defined(COLVARS_TCL)
Tcl_Interp *const tcl_interp =
reinterpret_cast<Tcl_Interp *>(get_tcl_interp());
size_t i;
std::string cmd = std::string("calc_") + name + "_gradient";
for (i = 0; i < cvc_values.size(); i++) {
cmd += std::string(" {") + (*(cvc_values[i])).to_simple_string() +
std::string("}");
}
int err = Tcl_Eval(tcl_interp, cmd.c_str());
if (err != TCL_OK) {
return cvm::error(std::string("Error while executing ")
+ cmd + std::string(":\n") +
std::string(Tcl_GetStringResult(tcl_interp)),
COLVARS_ERROR);
}
Tcl_Obj **list;
int n;
Tcl_ListObjGetElements(tcl_interp, Tcl_GetObjResult(tcl_interp),
&n, &list);
if (n != int(gradient.size())) {
cvm::error("Error parsing list of gradient values from script: found "
+ cvm::to_str(n) + " values instead of " +
cvm::to_str(gradient.size()));
return COLVARS_ERROR;
}
for (i = 0; i < gradient.size(); i++) {
std::istringstream is(Tcl_GetString(list[i]));
if (gradient[i].from_simple_string(is.str()) != COLVARS_OK) {
cvm::log("Gradient matrix size: " + cvm::to_str(gradient[i].size()));
cvm::log("Gradient string: " + cvm::to_str(Tcl_GetString(list[i])));
cvm::error("Error parsing gradient value from script", COLVARS_ERROR);
return COLVARS_ERROR;
}
}
return cvm::get_error();
#else
return COLVARS_NOT_IMPLEMENTED;
#endif
}