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Richard Berger 574e4067dc Add documentation files in RST format 
This is the first step for moving the documentation format from *.txt to the
*.rst format.

In the last years we've been automatically converting txt files from Steve's
markup into RST to generate the documentation pages via Sphinx. The decision
has now been made to fully migrate to RST and avoid the conversion in the
future.

This will enable us to fully use RST and Sphinx to improve the documentation.

For the intermediate period, while there are still pending PRs with
documentation changes, we will keep both source files and update the RST files
accordingly.
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..
.gitignore
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angle_charmm.rst
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angle_class2.rst
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angle_coeff.rst
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angle_cosine_buck6d.rst
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angle_cosine_delta.rst
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angle_cosine_periodic.rst
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angle_cosine_shift_exp.rst
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angle_cosine_shift.rst
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angle_cosine_squared.rst
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angle_cosine.rst
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angle_cross.rst
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angle_dipole.rst
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angle_fourier_simple.rst
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angle_fourier.rst
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angle_harmonic.rst
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angle_hybrid.rst
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angle_mm3.rst
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angle_none.rst
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angle_quartic.rst
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angle_sdk.rst
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angle_style.rst
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angle_table.rst
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angle_zero.rst
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angles.rst
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atom_modify.rst
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atom_style.rst
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balance.rst
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bond_class2.rst
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bond_coeff.rst
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bond_fene_expand.rst
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bond_fene.rst
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bond_gromos.rst
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bond_harmonic_shift_cut.rst
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bond_harmonic_shift.rst
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bond_harmonic.rst
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bond_hybrid.rst
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bond_mm3.rst
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bond_morse.rst
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bond_none.rst
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bond_nonlinear.rst
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bond_oxdna.rst
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bond_quartic.rst
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bond_style.rst
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bond_table.rst
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bond_write.rst
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bond_zero.rst
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bonds.rst
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boundary.rst
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box.rst
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Build_basics.rst
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Build_cmake.rst
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Build_development.rst
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Build_extras.rst
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Build_link.rst
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Build_make.rst
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Build_package.rst
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Build_settings.rst
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Build_windows.rst
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Build.rst
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change_box.rst
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clear.rst
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comm_modify.rst
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comm_style.rst
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Commands_all.rst
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Commands_bond.rst
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Commands_category.rst
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Commands_compute.rst
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Commands_fix.rst
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Commands_input.rst
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Commands_kspace.rst
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commands_list.rst
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Commands_pair.rst
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Commands_parse.rst
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Commands_removed.rst
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Commands_structure.rst
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Commands.rst
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compute_ackland_atom.rst
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compute_adf.rst
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compute_angle_local.rst
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compute_angle.rst
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compute_angmom_chunk.rst
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compute_basal_atom.rst
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compute_body_local.rst
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compute_bond_local.rst
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compute_bond.rst
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compute_centro_atom.rst
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compute_chunk_atom.rst
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compute_chunk_spread_atom.rst
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compute_cluster_atom.rst
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compute_cna_atom.rst
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compute_cnp_atom.rst
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compute_com_chunk.rst
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compute_com.rst
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compute_contact_atom.rst
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compute_coord_atom.rst
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compute_damage_atom.rst
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compute_dihedral_local.rst
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compute_dihedral.rst
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compute_dilatation_atom.rst
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compute_dipole_chunk.rst
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compute_displace_atom.rst
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compute_dpd_atom.rst
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compute_dpd.rst
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compute_edpd_temp_atom.rst
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compute_entropy_atom.rst
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compute_erotate_asphere.rst
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compute_erotate_rigid.rst
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compute_erotate_sphere_atom.rst
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compute_erotate_sphere.rst
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compute_event_displace.rst
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compute_fep.rst
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compute_global_atom.rst
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compute_group_group.rst
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compute_gyration_chunk.rst
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compute_gyration_shape.rst
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compute_gyration.rst
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compute_heat_flux.rst
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compute_hexorder_atom.rst
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compute_hma.rst
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compute_improper_local.rst
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compute_improper.rst
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compute_inertia_chunk.rst
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compute_ke_atom_eff.rst
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compute_ke_atom.rst
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compute_ke_eff.rst
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compute_ke_rigid.rst
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compute_ke.rst
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compute_meso_e_atom.rst
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compute_meso_rho_atom.rst
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compute_meso_t_atom.rst
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compute_modify.rst
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compute_momentum.rst
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compute_msd_chunk.rst
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compute_msd_nongauss.rst
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compute_msd.rst
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compute_omega_chunk.rst
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compute_orientorder_atom.rst
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compute_pair_local.rst
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compute_pair.rst
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compute_pe_atom.rst
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compute_pe.rst
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compute_plasticity_atom.rst
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compute_pressure_cylinder.rst
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compute_pressure_uef.rst
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compute_pressure.rst
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compute_property_atom.rst
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compute_property_chunk.rst
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compute_property_local.rst
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compute_ptm_atom.rst
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compute_rdf.rst
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compute_reduce_chunk.rst
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compute_reduce.rst
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compute_rigid_local.rst
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compute_saed.rst
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compute_slice.rst
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compute_smd_contact_radius.rst
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compute_smd_damage.rst
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compute_smd_hourglass_error.rst
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compute_smd_internal_energy.rst
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compute_smd_plastic_strain_rate.rst
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compute_smd_plastic_strain.rst
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compute_smd_rho.rst
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compute_smd_tlsph_defgrad.rst
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compute_smd_tlsph_dt.rst
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compute_smd_tlsph_num_neighs.rst
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compute_smd_tlsph_shape.rst
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compute_smd_tlsph_strain_rate.rst
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compute_smd_tlsph_strain.rst
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compute_smd_tlsph_stress.rst
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compute_smd_triangle_vertices.rst
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compute_smd_ulsph_num_neighs.rst
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compute_smd_ulsph_strain_rate.rst
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compute_smd_ulsph_strain.rst
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compute_smd_ulsph_stress.rst
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compute_smd_vol.rst
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compute_sna_atom.rst
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compute_spin.rst
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compute_stress_atom.rst
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compute_stress_mop.rst
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compute_tally.rst
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compute_tdpd_cc_atom.rst
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compute_temp_asphere.rst
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compute_temp_body.rst
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compute_temp_chunk.rst
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compute_temp_com.rst
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compute_temp_cs.rst
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compute_temp_deform_eff.rst
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compute_temp_deform.rst
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compute_temp_drude.rst
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compute_temp_eff.rst
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compute_temp_partial.rst
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compute_temp_profile.rst
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compute_temp_ramp.rst
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compute_temp_region_eff.rst
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compute_temp_region.rst
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compute_temp_rotate.rst
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compute_temp_sphere.rst
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compute_temp_uef.rst
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compute_temp.rst
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compute_ti.rst
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compute_torque_chunk.rst
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compute_vacf.rst
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compute_vcm_chunk.rst
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compute_voronoi_atom.rst
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compute_xrd.rst
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compute.rst
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computes.rst
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create_atoms.rst
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create_bonds.rst
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create_box.rst
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delete_atoms.rst
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delete_bonds.rst
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dielectric.rst
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dihedral_charmm.rst
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dihedral_class2.rst
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dihedral_coeff.rst
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dihedral_cosine_shift_exp.rst
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dihedral_fourier.rst
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dihedral_harmonic.rst
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dihedral_helix.rst
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dihedral_hybrid.rst
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dihedral_multi_harmonic.rst
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dihedral_nharmonic.rst
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dihedral_none.rst
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dihedral_opls.rst
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dihedral_quadratic.rst
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dihedral_spherical.rst
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dihedral_style.rst
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dihedral_table_cut.rst
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dihedral_table.rst
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dihedral_zero.rst
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dihedrals.rst
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dimension.rst
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displace_atoms.rst
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dump_adios.rst
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dump.rst
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dynamical_matrix.rst
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echo.rst
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Examples.rst
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fix.rst
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fixes.rst
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group2ndx.rst
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group.rst
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Howto.rst
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hyper.rst
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if.rst
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improper_class2.rst
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improper_coeff.rst
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improper_distance.rst
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improper_style.rst
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impropers.rst
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include.rst
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info.rst
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Install_git.rst
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Install_linux.rst
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Install.rst
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Intro_authors.rst
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Intro.rst
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jump.rst
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kim_commands.rst
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kspace_modify.rst
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label.rst
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lattice.rst
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log.rst
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mass.rst
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message.rst
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molecule.rst
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neb_spin.rst
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neb.rst
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neigh_modify.rst
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neighbor.rst
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newton.rst
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next.rst
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package.rst
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Packages.rst
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pair_adp.rst
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pair_agni.rst
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pair_bop.rst
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pair_brownian.rst
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pair_buck_long.rst
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pair_class2.rst
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pair_coeff.rst
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pair_colloid.rst
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pair_cs.rst
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pair_dipole.rst
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pair_dpd_fdt.rst
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pair_dpd.rst
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pair_drip.rst
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pair_dsmc.rst
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pair_e3b.rst
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pair_eam.rst
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pair_eim.rst
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pair_exp6_rx.rst
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pair_fep_soft.rst
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pair_gauss.rst
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pair_gayberne.rst
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pair_gran.rst
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pair_granular.rst
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pair_gw.rst
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pair_hbond_dreiding.rst
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pair_hybrid.rst
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pair_ilp_graphene_hbn.rst
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pair_kim.rst
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pair_kolmogorov_crespi_full.rst
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pair_lcbop.rst
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pair_list.rst
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pair_lj96.rst
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pair_lj_switch3_coulgauss.rst
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pair_lj.rst
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pair_lubricate.rst
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pair_mdf.rst
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pair_meam_spline.rst
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pair_meso.rst
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pair_mgpt.rst
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pair_mie.rst
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pair_mm3_switch3_coulgauss.rst
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pair_modify.rst
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pair_momb.rst
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pair_morse.rst
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pair_multi_lucy_rx.rst
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pair_multi_lucy.rst
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pair_nb3b_harmonic.rst
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pair_nm.rst
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pair_none.rst
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pair_oxdna2.rst
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pair_peri.rst
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pair_polymorphic.rst
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pair_python.rst
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pair_quip.rst
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pair_reaxc.rst
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pair_resquared.rst
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pair_sdk.rst
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pair_sdpd_taitwater_isothermal.rst
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pair_smd_hertz.rst
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pair_smd_tlsph.rst
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pair_smd_ulsph.rst
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pair_smtbq.rst
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pair_snap.rst
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pair_soft.rst
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pair_sph_heatconduction.rst
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pair_sph_idealgas.rst
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pair_sph_rhosum.rst
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pair_sph_taitwater_morris.rst
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pair_spin_dipole.rst
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pair_spin_magelec.rst
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pair_srp.rst
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pair_style.rst
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pair_sw.rst
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pair_table_rx.rst
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pair_table.rst
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pair_tersoff_mod.rst
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pair_tersoff_zbl.rst
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pair_thole.rst
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pair_tri_lj.rst
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pair_ufm.rst
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pair_vashishta.rst
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pair_write.rst
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pair_yukawa_colloid.rst
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pair_yukawa.rst
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pair_zbl.rst
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pair_zero.rst
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pairs.rst
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partition.rst
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prd.rst
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print.rst
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processors.rst
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Python_call.rst
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python.rst
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quit.rst
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read_data.rst
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read_dump.rst
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read_restart.rst
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region.rst
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replicate.rst
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rerun.rst
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reset_ids.rst
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run_style.rst
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run.rst
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server_mc.rst
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server.rst
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set.rst
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shell.rst
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special_bonds.rst
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Speed_bench.rst
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Speed_compare.rst
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Speed_gpu.rst
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Speed_intel.rst
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Speed_kokkos.rst
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Speed_measure.rst
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Speed_omp.rst
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Speed_opt.rst
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Speed_packages.rst
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Speed_tips.rst
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Speed.rst
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suffix.rst
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tad.rst
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temper_grem.rst
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temper_npt.rst
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temper.rst
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thermo_modify.rst
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thermo_style.rst
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thermo.rst
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timer.rst
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timestep.rst
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Tools.rst
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uncompute.rst
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undump.rst
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unfix.rst
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units.rst
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variable.rst
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velocity.rst
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write_coeff.rst
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write_data.rst
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write_dump.rst
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write_restart.rst
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