The following is a list of pull requests relevant to LAMMPS in the Colvars repository since 2024-08-06: - 752 New tool poisson_integrator_conv https://github.com/Colvars/colvars/pull/752 (@jhenin) - 733 Custom grids for all biases https://github.com/Colvars/colvars/pull/733 (@giacomofiorin, @jhenin) - 776 Avoid error in acos and asin with fast-math https://github.com/Colvars/colvars/pull/776 (@jhenin) - 773 fix: fix the clang build test failure of OPES https://github.com/Colvars/colvars/pull/773 (@HanatoK) - 768 fix: clamp the input values of asin and acos in case of fast math on aarch64 https://github.com/Colvars/colvars/pull/768 (@HanatoK) - 761 Add debug code for the Jacobi failure https://github.com/Colvars/colvars/pull/761 (@HanatoK) - 759 min_image fix; Saves long runs from crashes; https://github.com/Colvars/colvars/pull/759 (@PolyachenkoYA) - 757 Fix MSVC OpenMP issue https://github.com/Colvars/colvars/pull/757 (@HanatoK) - 755 Fix indentation of 'Init CVC' message in standard output https://github.com/Colvars/colvars/pull/755 (@jhenin) - 750 Optimize and simplify the calculation of dihedral gradients https://github.com/Colvars/colvars/pull/750 (@HanatoK) - 749 Add references to new Colvars paper https://github.com/Colvars/colvars/pull/749 (@jhenin, @giacomofiorin) - 740 Report the specific C++ standard at init time, stop warning about C++97/03 https://github.com/Colvars/colvars/pull/740 (@giacomofiorin) - 731 Improve detection of hard/mathematical boundaries https://github.com/Colvars/colvars/pull/731 (@giacomofiorin) - 729 Optimize the fit gradients https://github.com/Colvars/colvars/pull/729 (@HanatoK, @jhenin) - 728 Fix undefined behavior when getting the current working directory from std::filesystem https://github.com/Colvars/colvars/pull/728 (@giacomofiorin) - 727 Add patchversion scripting command https://github.com/Colvars/colvars/pull/727 (@giacomofiorin) - 724 Fix gradients and metric functions of distanceDir https://github.com/Colvars/colvars/pull/724 (@giacomofiorin) - 715 Add missing rotation in orientation component https://github.com/Colvars/colvars/pull/715 (@giacomofiorin) - 713 fix: try to solve #87 for non-scala components https://github.com/Colvars/colvars/pull/713 (@HanatoK) - 709 Implementation of OPES in Colvars https://github.com/Colvars/colvars/pull/709 (@HanatoK, @giacomofiorin, @jhenin) - 706 BUGFIX for Segmentation fault in colvarbias_meta::calc_energy() with useGrids off https://github.com/Colvars/colvars/pull/706 (@alphataubio) - 570 enable use of CVs defined by PyTorch neural network models https://github.com/Colvars/colvars/pull/570 (@zwpku, @giacomofiorin, @HanatoK, @jhenin) Authors: @alphataubio, @EzryStIago, @giacomofiorin, @HanatoK, @jhenin, @PolyachenkoYA, @zwpku
110 lines
2.4 KiB
C++
110 lines
2.4 KiB
C++
// -*- c++ -*-
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// This file is part of the Collective Variables module (Colvars).
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// The original version of Colvars and its updates are located at:
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// https://github.com/Colvars/colvars
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// Please update all Colvars source files before making any changes.
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// If you wish to distribute your changes, please submit them to the
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// Colvars repository at GitHub.
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#include "colvarmodule.h"
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#include "colvarproxy_replicas.h"
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colvarproxy_replicas::colvarproxy_replicas()
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{
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#ifdef COLVARS_MPI
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replicas_mpi_comm = MPI_COMM_NULL;
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#endif
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}
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colvarproxy_replicas::~colvarproxy_replicas() {}
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void colvarproxy_replicas::set_replicas_mpi_communicator(replicas_mpi_comm_t comm)
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{
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replicas_mpi_comm = comm;
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#ifdef COLVARS_MPI
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if (comm != MPI_COMM_NULL) {
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MPI_Comm_rank(comm, &replicas_mpi_rank);
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MPI_Comm_size(comm, &replicas_mpi_num);
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cvm::log("Enabling multiple replicas: this is replica number " +
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cvm::to_str(replica_index() + 1) + " of " + cvm::to_str(num_replicas()) + ".\n");
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}
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#endif
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}
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int colvarproxy_replicas::check_replicas_enabled()
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{
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#ifdef COLVARS_MPI
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if (replicas_mpi_comm != MPI_COMM_NULL) {
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return num_replicas() > 1 ? COLVARS_OK : COLVARS_ERROR;
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}
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return COLVARS_ERROR;
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#else
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return COLVARS_NOT_IMPLEMENTED;
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#endif
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}
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int colvarproxy_replicas::replica_index()
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{
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return replicas_mpi_rank;
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}
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int colvarproxy_replicas::num_replicas()
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{
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return replicas_mpi_num;
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}
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void colvarproxy_replicas::replica_comm_barrier()
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{
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#ifdef COLVARS_MPI
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MPI_Barrier(replicas_mpi_comm);
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#endif
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}
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int colvarproxy_replicas::replica_comm_recv(char *buffer, int buffer_length, int source_rank)
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{
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#ifdef COLVARS_MPI
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MPI_Status status;
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int retval = MPI_Recv(buffer, buffer_length, MPI_CHAR, source_rank, 0, replicas_mpi_comm, &status);
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if (retval == MPI_SUCCESS) {
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MPI_Get_count(&status, MPI_CHAR, &retval);
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} else {
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retval = 0;
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}
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return retval;
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#else
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(void)buffer;
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(void)buffer_length;
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(void)source_rank;
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return COLVARS_NOT_IMPLEMENTED;
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#endif
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}
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int colvarproxy_replicas::replica_comm_send(char *buffer, int buffer_length, int destination_rank)
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{
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#ifdef COLVARS_MPI
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int retval = MPI_Send(buffer, buffer_length, MPI_CHAR, destination_rank, 0, replicas_mpi_comm);
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if (retval == MPI_SUCCESS) {
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retval = buffer_length;
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} else {
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retval = 0;
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}
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return retval;
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#else
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(void)buffer;
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(void)buffer_length;
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(void)destination_rank;
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return COLVARS_NOT_IMPLEMENTED;
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#endif
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}
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