435 lines
34 KiB
HTML
435 lines
34 KiB
HTML
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<title>pair_coeff command — LAMMPS documentation</title>
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<div class="lammps_version">Version: <b>19 Nov 2024</b></div>
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<li class="toctree-l1"><a class="reference internal" href="Install.html">2. Install LAMMPS</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Build.html">3. Build LAMMPS</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Run_head.html">4. Run LAMMPS</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Library.html">1. LAMMPS Library Interfaces</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Modify.html">3. Modifying & extending LAMMPS</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Developer.html">4. Information for Developers</a></li>
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<li class="toctree-l1 current"><a class="reference internal" href="commands_list.html">Commands</a><ul class="current">
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<li class="toctree-l2"><a class="reference internal" href="angle_coeff.html">angle_coeff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="angle_style.html">angle_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="angle_write.html">angle_write command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="atom_modify.html">atom_modify command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="atom_style.html">atom_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="balance.html">balance command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="bond_coeff.html">bond_coeff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="bond_style.html">bond_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="bond_write.html">bond_write command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="boundary.html">boundary command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="clear.html">clear command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="comm_modify.html">comm_modify command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="comm_style.html">comm_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute.html">compute command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_modify.html">compute_modify command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="create_atoms.html">create_atoms command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="create_bonds.html">create_bonds command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="create_box.html">create_box command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="delete_atoms.html">delete_atoms command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="delete_bonds.html">delete_bonds command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="dielectric.html">dielectric command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="dihedral_coeff.html">dihedral_coeff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="dihedral_style.html">dihedral_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="dihedral_write.html">dihedral_write command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="dimension.html">dimension command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="displace_atoms.html">displace_atoms command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="dynamical_matrix.html">dynamical_matrix command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="echo.html">echo command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="fix.html">fix command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="fix_modify.html">fix_modify command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="fitpod_command.html">fitpod command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="group2ndx.html">group2ndx command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="group2ndx.html#ndx2group-command">ndx2group command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="if.html">if command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="improper_coeff.html">improper_coeff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="improper_style.html">improper_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="include.html">include command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="kspace_modify.html">kspace_modify command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="lattice.html">lattice command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="mdi.html">mdi command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="min_spin.html#min-style-spin-lbfgs-command">min_style spin/lbfgs command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="min_style.html#min-style-spin-command"><span class="xref std std-doc">min_style spin</span> command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="min_style.html#min-style-spin-cg-command"><span class="xref std std-doc">min_style spin/cg</span> command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="min_style.html#min-style-spin-lbfgs-command"><span class="xref std std-doc">min_style spin/lbfgs</span> command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="minimize.html">minimize command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="molecule.html">molecule command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="neb.html">neb command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="neb_spin.html">neb/spin command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="neigh_modify.html">neigh_modify command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="neighbor.html">neighbor command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="newton.html">newton command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="next.html">next command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="package.html">package command</a></li>
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<li class="toctree-l2 current"><a class="current reference internal" href="#">pair_coeff command</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="#syntax">Syntax</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#examples">Examples</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#restrictions">Restrictions</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#related-commands">Related commands</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#default">Default</a></li>
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</ul>
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</li>
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<li class="toctree-l2"><a class="reference internal" href="pair_modify.html">pair_modify command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="pair_style.html">pair_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="pair_write.html">pair_write command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="partition.html">partition command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="quit.html">quit command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="read_data.html">read_data command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="read_dump.html">read_dump command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="read_restart.html">read_restart command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="region.html">region command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="replicate.html">replicate command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="rerun.html">rerun command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="reset_atoms.html">reset_atoms command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="reset_timestep.html">reset_timestep command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="restart.html">restart command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="run.html">run command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="run_style.html">run_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="set.html">set command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="shell.html">shell command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="special_bonds.html">special_bonds command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="suffix.html">suffix command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="tad.html">tad command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="temper.html">temper command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="temper_grem.html">temper/grem command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="temper_npt.html">temper/npt command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="thermo.html">thermo command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="thermo_modify.html">thermo_modify command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="thermo_style.html">thermo_style command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="third_order.html">third_order command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="timer.html">timer command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="timestep.html">timestep command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="uncompute.html">uncompute command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="undump.html">undump command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="unfix.html">unfix command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="units.html">units command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="variable.html">variable command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="velocity.html">velocity command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="write_coeff.html">write_coeff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="write_data.html">write_data command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="write_dump.html">write_dump command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="write_restart.html">write_restart command</a></li>
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</ul>
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</li>
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<li class="toctree-l1"><a class="reference internal" href="fixes.html">Fix Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="computes.html">Compute Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="pairs.html">Pair Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="bonds.html">Bond Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="angles.html">Angle Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="dihedrals.html">Dihedral Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="impropers.html">Improper Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="dumps.html">Dump Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="fix_modify_atc_commands.html">fix_modify AtC commands</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Bibliography.html">Bibliography</a></li>
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<p><span class="math notranslate nohighlight">\(\renewcommand{\AA}{\text{Å}}\)</span></p>
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<section id="pair-coeff-command">
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<span id="index-0"></span><h1>pair_coeff command<a class="headerlink" href="#pair-coeff-command" title="Link to this heading"></a></h1>
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<section id="syntax">
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<h2>Syntax<a class="headerlink" href="#syntax" title="Link to this heading"></a></h2>
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<div class="highlight-LAMMPS notranslate"><div class="highlight"><pre><span></span><span class="k">pair_coeff</span><span class="w"> </span><span class="n">I</span><span class="w"> </span><span class="n">J</span><span class="w"> </span><span class="n">args</span>
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</pre></div>
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</div>
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<ul class="simple">
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<li><p>I,J = numeric atom types (see asterisk form below), or type labels</p></li>
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<li><p>args = coefficients for one or more pairs of atom types</p></li>
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</ul>
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</section>
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<section id="examples">
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<h2>Examples<a class="headerlink" href="#examples" title="Link to this heading"></a></h2>
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<div class="highlight-LAMMPS notranslate"><div class="highlight"><pre><span></span><span class="k">pair_coeff</span><span class="w"> </span><span class="m">1</span><span class="w"> </span><span class="m">2</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">2.5</span>
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<span class="k">pair_coeff</span><span class="w"> </span><span class="m">2</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">1.0</span>
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<span class="k">pair_coeff</span><span class="w"> </span><span class="m">3</span><span class="o">*</span><span class="w"> </span><span class="m">1</span><span class="o">*</span><span class="m">2</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">2.5</span>
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<span class="k">pair_coeff</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">1.0</span>
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<span class="k">pair_coeff</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="n">nialhjea</span><span class="w"> </span><span class="m">1</span><span class="w"> </span><span class="m">1</span><span class="w"> </span><span class="m">2</span>
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<span class="k">pair_coeff</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="m">3</span><span class="w"> </span><span class="n">morse.table</span><span class="w"> </span><span class="n">ENTRY1</span>
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<span class="k">pair_coeff</span><span class="w"> </span><span class="m">1</span><span class="w"> </span><span class="m">2</span><span class="w"> </span><span class="n">lj</span><span class="o">/</span><span class="n">cut</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">2.5</span><span class="w"> </span><span class="c"># (for pair_style hybrid)</span>
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<span class="k">labelmap</span><span class="w"> </span><span class="n">atom</span><span class="w"> </span><span class="m">1</span><span class="w"> </span><span class="n">C</span>
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<span class="k">labelmap</span><span class="w"> </span><span class="n">atom</span><span class="w"> </span><span class="m">2</span><span class="w"> </span><span class="n">H</span>
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<span class="k">pair_coeff</span><span class="w"> </span><span class="n">C</span><span class="w"> </span><span class="n">H</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">2.5</span>
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</pre></div>
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</div>
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</section>
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<section id="description">
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<h2>Description<a class="headerlink" href="#description" title="Link to this heading"></a></h2>
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<p>Specify the pairwise force field coefficients for one or more pairs of
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atom types. The number and meaning of the coefficients depends on the
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pair style. Pair coefficients can also be set in the data file read
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by the <a class="reference internal" href="read_data.html"><span class="doc">read_data</span></a> command or in a restart file.</p>
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<p>I and J can be specified in one of several ways. Explicit numeric
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values can be used for each, as in the first example above. Or, one
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or both of the types in the I,J pair can be a type label, which is an
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alphanumeric string defined by the <a class="reference internal" href="labelmap.html"><span class="doc">labelmap</span></a> command
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or in a section of a data file read by the <a class="reference internal" href="read_data.html"><span class="doc">read_data</span></a> command, and which converts internally to a numeric type.
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Internally, LAMMPS will set coefficients for the symmetric J,I
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interaction to the same values as the I,J interaction.</p>
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<p>For numeric values only, a wildcard asterisk can be used in place of or
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in conjunction with the I,J arguments to set the coefficients for
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multiple pairs of atom types. This takes the form “*” or “*n” or
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“n*” or “m*n”. If <span class="math notranslate nohighlight">\(N\)</span> is the number of atom types, then an
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asterisk with no numeric values means all types from 1 to <span class="math notranslate nohighlight">\(N\)</span>. A
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leading asterisk means all types from 1 to n (inclusive). A trailing
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asterisk means all types from n to <span class="math notranslate nohighlight">\(N\)</span> (inclusive). A middle
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asterisk means all types from m to n (inclusive). For the asterisk
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syntax, only type pairs with I <= J are considered; if asterisks imply
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type pairs where J < I, they are ignored. Again internally, LAMMPS will
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set the coefficients for the symmetric J,I interactions to the same
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values as the I <= J interactions.</p>
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<p>Note that a pair_coeff command can override a previous setting for the
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same I,J pair. For example, these commands set the coeffs for all I,J
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pairs, then overwrite the coeffs for just the I,J = 2,3 pair:</p>
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<div class="highlight-LAMMPS notranslate"><div class="highlight"><pre><span></span><span class="k">pair_coeff</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">2.5</span>
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<span class="k">pair_coeff</span><span class="w"> </span><span class="m">2</span><span class="w"> </span><span class="m">3</span><span class="w"> </span><span class="m">2.0</span><span class="w"> </span><span class="m">1.0</span><span class="w"> </span><span class="m">1.12</span>
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</pre></div>
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</div>
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<p>A line in a data file that specifies pair coefficients uses the exact
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same format as the arguments of the pair_coeff command in an input
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script, with the exception of the I,J type arguments. In each line of
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the “Pair Coeffs” section of a data file, only a single type I is
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specified, which sets the coefficients for type I interacting with
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type I. This is because the section has exactly <span class="math notranslate nohighlight">\(N\)</span> lines, where
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<span class="math notranslate nohighlight">\(N\)</span> is the number of atom types. For this reason, the wild-card
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asterisk should also not be used as part of the I argument. Thus in a
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data file, the line corresponding to the first example above would be
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listed as</p>
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<div class="highlight-none notranslate"><div class="highlight"><pre><span></span>2 1.0 1.0 2.5
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</pre></div>
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</div>
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<p>For many potentials, if coefficients for type pairs with I != J are
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not set explicitly by a pair_coeff command, the values are inferred
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from the I,I and J,J settings by mixing rules; see the
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<a class="reference internal" href="pair_modify.html"><span class="doc">pair_modify</span></a> command for a discussion. Details on
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this option as it pertains to individual potentials are described on
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the page for the potential.</p>
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<p>Many pair styles, typically for many-body potentials, use tabulated
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potential files as input, when specifying the pair_coeff command.
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Potential files provided with LAMMPS are in the potentials directory
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of the distribution. For some potentials, such as EAM, other archives
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of suitable files can be found on the Web. They can be used with
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LAMMPS so long as they are in the format LAMMPS expects, as discussed
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on the individual doc pages. The first line of potential files may
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contain metadata with upper case tags followed their value. These may
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be parsed and used by LAMMPS. Currently supported are the “DATE:”
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tag and the <code class="docutils literal notranslate"><span class="pre">UNITS:</span></code> tag. For pair styles that have been programmed
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to support the metadata, the value of the “DATE:” tag is printed to
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the screen and logfile so that the version of a potential file can be
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later identified. The <code class="docutils literal notranslate"><span class="pre">UNITS:</span></code> tag indicates the <a class="reference internal" href="units.html"><span class="doc">units</span></a>
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setting required for this particular potential file. If the potential
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file was created for a different sets of units, LAMMPS will terminate
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with an error. If the potential file does not contain the tag, no
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check will be made and it is the responsibility of the user to determine
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that the unit style is correct.</p>
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<p>In some select cases and for specific combinations of unit styles,
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LAMMPS is capable of automatically converting potential parameters
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from a file. In those cases, a warning message signaling that an
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automatic conversion has happened is printed to the screen.</p>
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<p>When a pair_coeff command using a potential file is specified, LAMMPS
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looks for the potential file in 2 places. First it looks in the
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location specified. E.g. if the file is specified as “niu3.eam”, it
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is looked for in the current working directory. If it is specified as
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“../potentials/niu3.eam”, then it is looked for in the potentials
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directory, assuming it is a sister directory of the current working
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directory. If the file is not found, it is then looked for in one of
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the directories specified by the <code class="docutils literal notranslate"><span class="pre">LAMMPS_POTENTIALS</span></code> environment variable.
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Thus if this is set to the potentials directory in the LAMMPS distribution,
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then you can use those files from anywhere on your system, without
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copying them into your working directory. Environment variables are
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set in different ways for different shells. Here are example settings
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for</p>
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<p>csh, tcsh:</p>
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<div class="highlight-tcsh notranslate"><div class="highlight"><pre><span></span><span class="nb">setenv </span>LAMMPS_POTENTIALS /path/to/lammps/potentials
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</pre></div>
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</div>
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<p>bash:</p>
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<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">export</span><span class="w"> </span><span class="nv">LAMMPS_POTENTIALS</span><span class="o">=</span>/path/to/lammps/potentials
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</pre></div>
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</div>
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<p>Windows:</p>
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<div class="highlight-console notranslate"><div class="highlight"><pre><span></span><span class="go">set LAMMPS_POTENTIALS="C:\\Path to LAMMPS\\Potentials"</span>
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</pre></div>
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</div>
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<p>The <code class="docutils literal notranslate"><span class="pre">LAMMPS_POTENTIALS</span></code> environment variable may contain paths
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to multiple folders, if they are separated by “;” on Windows and
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“:” on all other operating systems, just like the <code class="docutils literal notranslate"><span class="pre">PATH</span></code> and
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similar environment variables.</p>
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<hr class="docutils" />
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<p>The alphabetic list of pair styles defined in LAMMPS is given on the
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<a class="reference internal" href="pair_style.html"><span class="doc">pair_style</span></a> doc page. They are also listed in more
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compact form on the <a class="reference internal" href="Commands_pair.html"><span class="doc">Commands pair</span></a> doc page.</p>
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<p>Click on the style to display the formula it computes and its
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coefficients as specified by the associated pair_coeff command.</p>
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</section>
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<hr class="docutils" />
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<section id="restrictions">
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<h2>Restrictions<a class="headerlink" href="#restrictions" title="Link to this heading"></a></h2>
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<p>This command must come after the simulation box is defined by a
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<a class="reference internal" href="read_data.html"><span class="doc">read_data</span></a>, <a class="reference internal" href="read_restart.html"><span class="doc">read_restart</span></a>, or
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<a class="reference internal" href="create_box.html"><span class="doc">create_box</span></a> command.</p>
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</section>
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<section id="related-commands">
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<h2>Related commands<a class="headerlink" href="#related-commands" title="Link to this heading"></a></h2>
|
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<p><a class="reference internal" href="pair_style.html"><span class="doc">pair_style</span></a>, <a class="reference internal" href="pair_modify.html"><span class="doc">pair_modify</span></a>,
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<a class="reference internal" href="read_data.html"><span class="doc">read_data</span></a>, <a class="reference internal" href="read_restart.html"><span class="doc">read_restart</span></a>,
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<a class="reference internal" href="pair_write.html"><span class="doc">pair_write</span></a></p>
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</section>
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<section id="default">
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<h2>Default<a class="headerlink" href="#default" title="Link to this heading"></a></h2>
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<p>none</p>
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