ICODE-ADC/lammps
4
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
Files
ef575d5944eedf01eb2cef162e2dc07e53ce9ba9
lammps/src/KSPACE/ewald_dipole.cpp
Axel Kohlmeyer 2132b1d904 update developer reference text
2022-10-24 11:08:26 -04:00

904 lines
27 KiB
C++
Raw Blame History

// clang-format off
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://www.lammps.org/, Sandia National Laboratories
LAMMPS development team: developers@lammps.org
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
/* ----------------------------------------------------------------------
Contributing authors: Julien Tranchida (SNL), Stan Moore (SNL)
------------------------------------------------------------------------- */
#include "ewald_dipole.h"
#include "atom.h"
#include "comm.h"
#include "domain.h"
#include "error.h"
#include "force.h"
#include "math_const.h"
#include "math_special.h"
#include "memory.h"
#include "pair.h"
#include "update.h"
#include <cmath>
#include <cstring>
using namespace LAMMPS_NS;
using namespace MathConst;
using namespace MathSpecial;
#define SMALL 0.00001
/* ---------------------------------------------------------------------- */
EwaldDipole::EwaldDipole(LAMMPS *lmp) : Ewald(lmp),
tk(nullptr), vc(nullptr)
{
ewaldflag = dipoleflag = 1;
group_group_enable = 0;
tk = nullptr;
vc = nullptr;
}
/* ----------------------------------------------------------------------
free all memory
------------------------------------------------------------------------- */
EwaldDipole::~EwaldDipole()
{
memory->destroy(tk);
memory->destroy(vc);
}
/* ----------------------------------------------------------------------
called once before run
------------------------------------------------------------------------- */
void EwaldDipole::init()
{
if (comm->me == 0) utils::logmesg(lmp,"EwaldDipole initialization ...\n");
// error check
dipoleflag = atom->mu?1:0;
qsum_qsq(0); // q[i] might not be declared ?
if (dipoleflag && q2)
error->all(FLERR,"Cannot (yet) use charges with Kspace style EwaldDipole");
// no triclinic ewald dipole (yet)
triclinic_check();
triclinic = domain->triclinic;
if (triclinic)
error->all(FLERR,"Cannot (yet) use EwaldDipole with triclinic box");
if (domain->dimension == 2)
error->all(FLERR,"Cannot use EwaldDipole with 2d simulation");
if (!atom->mu) error->all(FLERR,"Kspace style requires atom attribute mu");
if (dipoleflag && strcmp(update->unit_style,"electron") == 0)
error->all(FLERR,"Cannot (yet) use 'electron' units with dipoles");
if (slabflag == 0 && domain->nonperiodic > 0)
error->all(FLERR,"Cannot use nonperiodic boundaries with EwaldDipole");
if (slabflag) {
if (domain->xperiodic != 1 || domain->yperiodic != 1 ||
domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1)
error->all(FLERR,"Incorrect boundaries with slab EwaldDipole");
}
// compute two charge force
two_charge();
// extract short-range Coulombic cutoff from pair style
triclinic = domain->triclinic;
if (triclinic)
error->all(FLERR,"Cannot yet use triclinic cells with EwaldDipole");
pair_check();
int itmp;
auto p_cutoff = (double *) force->pair->extract("cut_coul",itmp);
if (p_cutoff == nullptr)
error->all(FLERR,"KSpace style is incompatible with Pair style");
double cutoff = *p_cutoff;
// kspace TIP4P not yet supported
// qdist = offset only for TIP4P fictitious charge
//qdist = 0.0;
if (tip4pflag)
error->all(FLERR,"Cannot yet use TIP4P with EwaldDipole");
// compute musum & musqsum and warn if no dipole
scale = 1.0;
qqrd2e = force->qqrd2e;
musum_musq();
natoms_original = atom->natoms;
// set accuracy (force units) from accuracy_relative or accuracy_absolute
if (accuracy_absolute >= 0.0) accuracy = accuracy_absolute;
else accuracy = accuracy_relative * two_charge_force;
// setup K-space resolution
bigint natoms = atom->natoms;
// use xprd,yprd,zprd even if triclinic so grid size is the same
// adjust z dimension for 2d slab EwaldDipole
// 3d EwaldDipole just uses zprd since slab_volfactor = 1.0
double xprd = domain->xprd;
double yprd = domain->yprd;
double zprd = domain->zprd;
double zprd_slab = zprd*slab_volfactor;
// make initial g_ewald estimate
// based on desired accuracy and real space cutoff
// fluid-occupied volume used to estimate real-space error
// zprd used rather than zprd_slab
if (!gewaldflag) {
if (accuracy <= 0.0)
error->all(FLERR,"KSpace accuracy must be > 0");
// initial guess with old method
g_ewald = accuracy*sqrt(natoms*cutoff*xprd*yprd*zprd) / (2.0*mu2);
if (g_ewald >= 1.0) g_ewald = (1.35 - 0.15*log(accuracy))/cutoff;
else g_ewald = sqrt(-log(g_ewald)) / cutoff;
// try Newton solver
double g_ewald_new =
NewtonSolve(g_ewald,cutoff,natoms,xprd*yprd*zprd,mu2);
if (g_ewald_new > 0.0) g_ewald = g_ewald_new;
else error->warning(FLERR,"Ewald/disp Newton solver failed, "
"using old method to estimate g_ewald");
}
// setup EwaldDipole coefficients so can print stats
setup();
// final RMS accuracy
double lprx = rms(kxmax_orig,xprd,natoms,q2);
double lpry = rms(kymax_orig,yprd,natoms,q2);
double lprz = rms(kzmax_orig,zprd_slab,natoms,q2);
double lpr = sqrt(lprx*lprx + lpry*lpry + lprz*lprz) / sqrt(3.0);
double q2_over_sqrt = q2 / sqrt(natoms*cutoff*xprd*yprd*zprd_slab);
double spr = 2.0 *q2_over_sqrt * exp(-g_ewald*g_ewald*cutoff*cutoff);
double tpr = estimate_table_accuracy(q2_over_sqrt,spr);
double estimated_accuracy = sqrt(lpr*lpr + spr*spr + tpr*tpr);
// stats
if (comm->me == 0) {
std::string mesg = fmt::format(" G vector (1/distance) = {:.8g}\n",g_ewald);
mesg += fmt::format(" estimated absolute RMS force accuracy = {:.8g}\n",
estimated_accuracy);
mesg += fmt::format(" estimated relative force accuracy = {:.8g}\n",
estimated_accuracy/two_charge_force);
mesg += fmt::format(" KSpace vectors: actual max1d max3d = {} {} {}\n",
kcount,kmax,kmax3d);
mesg += fmt::format(" kxmax kymax kzmax = {} {} {}\n",
kxmax,kymax,kzmax);
utils::logmesg(lmp,mesg);
}
}
/* ----------------------------------------------------------------------
adjust EwaldDipole coeffs, called initially and whenever volume has changed
------------------------------------------------------------------------- */
void EwaldDipole::setup()
{
// volume-dependent factors
double xprd = domain->xprd;
double yprd = domain->yprd;
double zprd = domain->zprd;
// adjustment of z dimension for 2d slab EwaldDipole
// 3d EwaldDipole just uses zprd since slab_volfactor = 1.0
double zprd_slab = zprd*slab_volfactor;
volume = xprd * yprd * zprd_slab;
unitk[0] = 2.0*MY_PI/xprd;
unitk[1] = 2.0*MY_PI/yprd;
unitk[2] = 2.0*MY_PI/zprd_slab;
int kmax_old = kmax;
if (kewaldflag == 0) {
// determine kmax
// function of current box size, accuracy, G_ewald (short-range cutoff)
bigint natoms = atom->natoms;
double err;
kxmax = 1;
kymax = 1;
kzmax = 1;
// set kmax in 3 directions to respect accuracy
err = rms_dipole(kxmax,xprd,natoms);
while (err > accuracy) {
kxmax++;
err = rms_dipole(kxmax,xprd,natoms);
}
err = rms_dipole(kymax,yprd,natoms);
while (err > accuracy) {
kymax++;
err = rms_dipole(kymax,yprd,natoms);
}
err = rms_dipole(kzmax,zprd,natoms);
while (err > accuracy) {
kzmax++;
err = rms_dipole(kzmax,zprd,natoms);
}
kmax = MAX(kxmax,kymax);
kmax = MAX(kmax,kzmax);
kmax3d = 4*kmax*kmax*kmax + 6*kmax*kmax + 3*kmax;
double gsqxmx = unitk[0]*unitk[0]*kxmax*kxmax;
double gsqymx = unitk[1]*unitk[1]*kymax*kymax;
double gsqzmx = unitk[2]*unitk[2]*kzmax*kzmax;
gsqmx = MAX(gsqxmx,gsqymx);
gsqmx = MAX(gsqmx,gsqzmx);
kxmax_orig = kxmax;
kymax_orig = kymax;
kzmax_orig = kzmax;
} else {
kxmax = kx_ewald;
kymax = ky_ewald;
kzmax = kz_ewald;
kxmax_orig = kxmax;
kymax_orig = kymax;
kzmax_orig = kzmax;
kmax = MAX(kxmax,kymax);
kmax = MAX(kmax,kzmax);
kmax3d = 4*kmax*kmax*kmax + 6*kmax*kmax + 3*kmax;
double gsqxmx = unitk[0]*unitk[0]*kxmax*kxmax;
double gsqymx = unitk[1]*unitk[1]*kymax*kymax;
double gsqzmx = unitk[2]*unitk[2]*kzmax*kzmax;
gsqmx = MAX(gsqxmx,gsqymx);
gsqmx = MAX(gsqmx,gsqzmx);
}
gsqmx *= 1.00001;
// if size has grown, reallocate k-dependent and nlocal-dependent arrays
if (kmax > kmax_old) {
deallocate();
allocate();
group_allocate_flag = 0;
memory->destroy(ek);
memory->destroy(tk);
memory->destroy(vc);
memory->destroy3d_offset(cs,-kmax_created);
memory->destroy3d_offset(sn,-kmax_created);
nmax = atom->nmax;
memory->create(ek,nmax,3,"ewald_dipole:ek");
memory->create(tk,nmax,3,"ewald_dipole:tk");
memory->create(vc,kmax3d,6,"ewald_dipole:tk");
memory->create3d_offset(cs,-kmax,kmax,3,nmax,"ewald_dipole:cs");
memory->create3d_offset(sn,-kmax,kmax,3,nmax,"ewald_dipole:sn");
kmax_created = kmax;
}
// pre-compute EwaldDipole coefficients
coeffs();
}
/* ----------------------------------------------------------------------
compute dipole RMS accuracy for a dimension
------------------------------------------------------------------------- */
double EwaldDipole::rms_dipole(int km, double prd, bigint natoms)
{
if (natoms == 0) natoms = 1; // avoid division by zero
// error from eq.(46), Wang et al., JCP 115, 6351 (2001)
double value = 8*MY_PI*mu2*g_ewald/volume *
sqrt(2*MY_PI*km*km*km/(15.0*natoms)) *
exp(-MY_PI*MY_PI*km*km/(g_ewald*g_ewald*prd*prd));
return value;
}
/* ----------------------------------------------------------------------
compute the EwaldDipole long-range force, energy, virial
------------------------------------------------------------------------- */
void EwaldDipole::compute(int eflag, int vflag)
{
int i,j,k;
const double g3 = g_ewald*g_ewald*g_ewald;
// set energy/virial flags
if (eflag || vflag) ev_setup(eflag,vflag);
else evflag = evflag_atom = eflag_global = vflag_global =
eflag_atom = vflag_atom = 0;
// if atom count has changed, update qsum and qsqsum
if (atom->natoms != natoms_original) {
musum_musq();
natoms_original = atom->natoms;
}
// return if there are no charges
if (musqsum == 0.0) return;
// extend size of per-atom arrays if necessary
if (atom->nmax > nmax) {
memory->destroy(ek);
memory->destroy(tk);
memory->destroy(vc);
memory->destroy3d_offset(cs,-kmax_created);
memory->destroy3d_offset(sn,-kmax_created);
nmax = atom->nmax;
memory->create(ek,nmax,3,"ewald_dipole:ek");
memory->create(tk,nmax,3,"ewald_dipole:tk");
memory->create(vc,kmax3d,6,"ewald_dipole:tk");
memory->create3d_offset(cs,-kmax,kmax,3,nmax,"ewald_dipole:cs");
memory->create3d_offset(sn,-kmax,kmax,3,nmax,"ewald_dipole:sn");
kmax_created = kmax;
}
// partial structure factors on each processor
// total structure factor by summing over procs
eik_dot_r();
MPI_Allreduce(sfacrl,sfacrl_all,kcount,MPI_DOUBLE,MPI_SUM,world);
MPI_Allreduce(sfacim,sfacim_all,kcount,MPI_DOUBLE,MPI_SUM,world);
// K-space portion of electric field
// double loop over K-vectors and local atoms
// perform per-atom calculations if needed
double **f = atom->f;
double **t = atom->torque;
double **mu = atom->mu;
int nlocal = atom->nlocal;
int kx,ky,kz;
double cypz,sypz,exprl,expim;
double partial,partial_peratom;
double vcik[6];
double mudotk;
for (i = 0; i < nlocal; i++) {
ek[i][0] = ek[i][1] = ek[i][2] = 0.0;
tk[i][0] = tk[i][1] = tk[i][2] = 0.0;
}
for (k = 0; k < kcount; k++) {
kx = kxvecs[k];
ky = kyvecs[k];
kz = kzvecs[k];
for (j = 0; j<6; j++) vc[k][j] = 0.0;
for (i = 0; i < nlocal; i++) {
for (j = 0; j<6; j++) vcik[j] = 0.0;
// re-evaluating mu dot k
mudotk = mu[i][0]*kx*unitk[0] + mu[i][1]*ky*unitk[1] + mu[i][2]*kz*unitk[2];
// calculating re and im of exp(i*k*ri)
cypz = cs[ky][1][i]*cs[kz][2][i] - sn[ky][1][i]*sn[kz][2][i];
sypz = sn[ky][1][i]*cs[kz][2][i] + cs[ky][1][i]*sn[kz][2][i];
exprl = cs[kx][0][i]*cypz - sn[kx][0][i]*sypz;
expim = sn[kx][0][i]*cypz + cs[kx][0][i]*sypz;
// taking im of struct_fact x exp(i*k*ri) (for force calc.)
partial = (mudotk)*(expim*sfacrl_all[k] - exprl*sfacim_all[k]);
ek[i][0] += partial * eg[k][0];
ek[i][1] += partial * eg[k][1];
ek[i][2] += partial * eg[k][2];
// compute field for torque calculation
partial_peratom = exprl*sfacrl_all[k] + expim*sfacim_all[k];
tk[i][0] += partial_peratom * eg[k][0];
tk[i][1] += partial_peratom * eg[k][1];
tk[i][2] += partial_peratom * eg[k][2];
// total and per-atom virial correction (dipole only)
vc[k][0] += vcik[0] = -(partial_peratom * mu[i][0] * eg[k][0]);
vc[k][1] += vcik[1] = -(partial_peratom * mu[i][1] * eg[k][1]);
vc[k][2] += vcik[2] = -(partial_peratom * mu[i][2] * eg[k][2]);
vc[k][3] += vcik[3] = -(partial_peratom * mu[i][0] * eg[k][1]);
vc[k][4] += vcik[4] = -(partial_peratom * mu[i][0] * eg[k][2]);
vc[k][5] += vcik[5] = -(partial_peratom * mu[i][1] * eg[k][2]);
// taking re-part of struct_fact x exp(i*k*ri)
// (for per-atom energy and virial calc.)
if (evflag_atom) {
if (eflag_atom) eatom[i] += mudotk*ug[k]*partial_peratom;
if (vflag_atom)
for (j = 0; j < 6; j++)
vatom[i][j] += (ug[k]*mudotk*vg[k][j]*partial_peratom - vcik[j]);
}
}
}
// force and torque calculation
const double muscale = qqrd2e * scale;
for (i = 0; i < nlocal; i++) {
f[i][0] += muscale * ek[i][0];
f[i][1] += muscale * ek[i][1];
if (slabflag != 2) f[i][2] += muscale * ek[i][2];
t[i][0] -= muscale * (mu[i][1]*tk[i][2] - mu[i][2]*tk[i][1]);
t[i][1] -= muscale * (mu[i][2]*tk[i][0] - mu[i][0]*tk[i][2]);
if (slabflag != 2) t[i][2] -= muscale * (mu[i][0]*tk[i][1] - mu[i][1]*tk[i][0]);
}
// sum global energy across Kspace vevs and add in volume-dependent term
// taking the re-part of struct_fact_i x struct_fact_j
// subtracting self energy and scaling
if (eflag_global) {
for (k = 0; k < kcount; k++) {
energy += ug[k] * (sfacrl_all[k]*sfacrl_all[k] +
sfacim_all[k]*sfacim_all[k]);
}
energy -= musqsum*2.0*g3/3.0/MY_PIS;
energy *= muscale;
}
// global virial
if (vflag_global) {
double uk;
for (k = 0; k < kcount; k++) {
uk = ug[k] * (sfacrl_all[k]*sfacrl_all[k] + sfacim_all[k]*sfacim_all[k]);
for (j = 0; j < 6; j++) virial[j] += uk*vg[k][j] - vc[k][j];
}
for (j = 0; j < 6; j++) virial[j] *= muscale;
}
// per-atom energy/virial
// energy includes self-energy correction
if (evflag_atom) {
if (eflag_atom) {
for (i = 0; i < nlocal; i++) {
eatom[i] -= (mu[i][0]*mu[i][0] + mu[i][1]*mu[i][1] + mu[i][2]*mu[i][2])
*2.0*g3/3.0/MY_PIS;
eatom[i] *= muscale;
}
}
if (vflag_atom)
for (i = 0; i < nlocal; i++)
for (j = 0; j < 6; j++) vatom[i][j] *= muscale;
}
// 2d slab correction
if (slabflag == 1) slabcorr();
}
/* ----------------------------------------------------------------------
compute the struc. factors and mu dot k products
------------------------------------------------------------------------- */
void EwaldDipole::eik_dot_r()
{
int i,k,l,m,n,ic;
double cstr1,sstr1,cstr2,sstr2,cstr3,sstr3,cstr4,sstr4;
double sqk,clpm,slpm;
double mux, muy, muz;
double mudotk;
double **x = atom->x;
double **mu = atom->mu;
int nlocal = atom->nlocal;
n = 0;
mux = muy = muz = 0.0;
// loop on different k-directions
// loop on n kpoints and nlocal atoms
// (k,0,0), (0,l,0), (0,0,m)
// loop 1: k=1, l=1, m=1
// define first val. of cos and sin
for (ic = 0; ic < 3; ic++) {
sqk = unitk[ic]*unitk[ic];
if (sqk <= gsqmx) {
cstr1 = 0.0;
sstr1 = 0.0;
for (i = 0; i < nlocal; i++) {
cs[0][ic][i] = 1.0;
sn[0][ic][i] = 0.0;
cs[1][ic][i] = cos(unitk[ic]*x[i][ic]);
sn[1][ic][i] = sin(unitk[ic]*x[i][ic]);
cs[-1][ic][i] = cs[1][ic][i];
sn[-1][ic][i] = -sn[1][ic][i];
mudotk = (mu[i][ic]*unitk[ic]);
cstr1 += mudotk*cs[1][ic][i];
sstr1 += mudotk*sn[1][ic][i];
}
sfacrl[n] = cstr1;
sfacim[n++] = sstr1;
}
}
// loop 2: k>1, l>1, m>1
for (m = 2; m <= kmax; m++) {
for (ic = 0; ic < 3; ic++) {
sqk = m*unitk[ic] * m*unitk[ic];
if (sqk <= gsqmx) {
cstr1 = 0.0;
sstr1 = 0.0;
for (i = 0; i < nlocal; i++) {
cs[m][ic][i] = cs[m-1][ic][i]*cs[1][ic][i] -
sn[m-1][ic][i]*sn[1][ic][i];
sn[m][ic][i] = sn[m-1][ic][i]*cs[1][ic][i] +
cs[m-1][ic][i]*sn[1][ic][i];
cs[-m][ic][i] = cs[m][ic][i];
sn[-m][ic][i] = -sn[m][ic][i];
mudotk = (mu[i][ic]*m*unitk[ic]);
cstr1 += mudotk*cs[m][ic][i];
sstr1 += mudotk*sn[m][ic][i];
}
sfacrl[n] = cstr1;
sfacim[n++] = sstr1;
}
}
}
// 1 = (k,l,0), 2 = (k,-l,0)
for (k = 1; k <= kxmax; k++) {
for (l = 1; l <= kymax; l++) {
sqk = (k*unitk[0] * k*unitk[0]) + (l*unitk[1] * l*unitk[1]);
if (sqk <= gsqmx) {
cstr1 = 0.0;
sstr1 = 0.0;
cstr2 = 0.0;
sstr2 = 0.0;
for (i = 0; i < nlocal; i++) {
mux = mu[i][0];
muy = mu[i][1];
// dir 1: (k,l,0)
mudotk = (mux*k*unitk[0] + muy*l*unitk[1]);
cstr1 += mudotk*(cs[k][0][i]*cs[l][1][i]-sn[k][0][i]*sn[l][1][i]);
sstr1 += mudotk*(sn[k][0][i]*cs[l][1][i]+cs[k][0][i]*sn[l][1][i]);
// dir 2: (k,-l,0)
mudotk = (mux*k*unitk[0] - muy*l*unitk[1]);
cstr2 += mudotk*(cs[k][0][i]*cs[l][1][i]+sn[k][0][i]*sn[l][1][i]);
sstr2 += mudotk*(sn[k][0][i]*cs[l][1][i]-cs[k][0][i]*sn[l][1][i]);
}
sfacrl[n] = cstr1;
sfacim[n++] = sstr1;
sfacrl[n] = cstr2;
sfacim[n++] = sstr2;
}
}
}
// 1 = (0,l,m), 2 = (0,l,-m)
for (l = 1; l <= kymax; l++) {
for (m = 1; m <= kzmax; m++) {
sqk = (l*unitk[1] * l*unitk[1]) + (m*unitk[2] * m*unitk[2]);
if (sqk <= gsqmx) {
cstr1 = 0.0;
sstr1 = 0.0;
cstr2 = 0.0;
sstr2 = 0.0;
for (i = 0; i < nlocal; i++) {
muy = mu[i][1];
muz = mu[i][2];
// dir 1: (0,l,m)
mudotk = (muy*l*unitk[1] + muz*m*unitk[2]);
cstr1 += mudotk*(cs[l][1][i]*cs[m][2][i] - sn[l][1][i]*sn[m][2][i]);
sstr1 += mudotk*(sn[l][1][i]*cs[m][2][i] + cs[l][1][i]*sn[m][2][i]);
// dir 2: (0,l,-m)
mudotk = (muy*l*unitk[1] - muz*m*unitk[2]);
cstr2 += mudotk*(cs[l][1][i]*cs[m][2][i]+sn[l][1][i]*sn[m][2][i]);
sstr2 += mudotk*(sn[l][1][i]*cs[m][2][i]-cs[l][1][i]*sn[m][2][i]);
}
sfacrl[n] = cstr1;
sfacim[n++] = sstr1;
sfacrl[n] = cstr2;
sfacim[n++] = sstr2;
}
}
}
// 1 = (k,0,m), 2 = (k,0,-m)
for (k = 1; k <= kxmax; k++) {
for (m = 1; m <= kzmax; m++) {
sqk = (k*unitk[0] * k*unitk[0]) + (m*unitk[2] * m*unitk[2]);
if (sqk <= gsqmx) {
cstr1 = 0.0;
sstr1 = 0.0;
cstr2 = 0.0;
sstr2 = 0.0;
for (i = 0; i < nlocal; i++) {
mux = mu[i][0];
muz = mu[i][2];
// dir 1: (k,0,m)
mudotk = (mux*k*unitk[0] + muz*m*unitk[2]);
cstr1 += mudotk*(cs[k][0][i]*cs[m][2][i]-sn[k][0][i]*sn[m][2][i]);
sstr1 += mudotk*(sn[k][0][i]*cs[m][2][i]+cs[k][0][i]*sn[m][2][i]);
// dir 2: (k,0,-m)
mudotk = (mux*k*unitk[0] - muz*m*unitk[2]);
cstr2 += mudotk*(cs[k][0][i]*cs[m][2][i]+sn[k][0][i]*sn[m][2][i]);
sstr2 += mudotk*(sn[k][0][i]*cs[m][2][i]-cs[k][0][i]*sn[m][2][i]);
}
sfacrl[n] = cstr1;
sfacim[n++] = sstr1;
sfacrl[n] = cstr2;
sfacim[n++] = sstr2;
}
}
}
// 1 = (k,l,m), 2 = (k,-l,m), 3 = (k,l,-m), 4 = (k,-l,-m)
for (k = 1; k <= kxmax; k++) {
for (l = 1; l <= kymax; l++) {
for (m = 1; m <= kzmax; m++) {
sqk = (k*unitk[0] * k*unitk[0]) + (l*unitk[1] * l*unitk[1]) +
(m*unitk[2] * m*unitk[2]);
if (sqk <= gsqmx) {
cstr1 = 0.0;
sstr1 = 0.0;
cstr2 = 0.0;
sstr2 = 0.0;
cstr3 = 0.0;
sstr3 = 0.0;
cstr4 = 0.0;
sstr4 = 0.0;
for (i = 0; i < nlocal; i++) {
mux = mu[i][0];
muy = mu[i][1];
muz = mu[i][2];
// dir 1: (k,l,m)
mudotk = (mux*k*unitk[0] + muy*l*unitk[1] + muz*m*unitk[2]);
clpm = cs[l][1][i]*cs[m][2][i] - sn[l][1][i]*sn[m][2][i];
slpm = sn[l][1][i]*cs[m][2][i] + cs[l][1][i]*sn[m][2][i];
cstr1 += mudotk*(cs[k][0][i]*clpm - sn[k][0][i]*slpm);
sstr1 += mudotk*(sn[k][0][i]*clpm + cs[k][0][i]*slpm);
// dir 2: (k,-l,m)
mudotk = (mux*k*unitk[0] - muy*l*unitk[1] + muz*m*unitk[2]);
clpm = cs[l][1][i]*cs[m][2][i] + sn[l][1][i]*sn[m][2][i];
slpm = -sn[l][1][i]*cs[m][2][i] + cs[l][1][i]*sn[m][2][i];
cstr2 += mudotk*(cs[k][0][i]*clpm - sn[k][0][i]*slpm);
sstr2 += mudotk*(sn[k][0][i]*clpm + cs[k][0][i]*slpm);
// dir 3: (k,l,-m)
mudotk = (mux*k*unitk[0] + muy*l*unitk[1] - muz*m*unitk[2]);
clpm = cs[l][1][i]*cs[m][2][i] + sn[l][1][i]*sn[m][2][i];
slpm = sn[l][1][i]*cs[m][2][i] - cs[l][1][i]*sn[m][2][i];
cstr3 += mudotk*(cs[k][0][i]*clpm - sn[k][0][i]*slpm);
sstr3 += mudotk*(sn[k][0][i]*clpm + cs[k][0][i]*slpm);
// dir 4: (k,-l,-m)
mudotk = (mux*k*unitk[0] - muy*l*unitk[1] - muz*m*unitk[2]);
clpm = cs[l][1][i]*cs[m][2][i] - sn[l][1][i]*sn[m][2][i];
slpm = -sn[l][1][i]*cs[m][2][i] - cs[l][1][i]*sn[m][2][i];
cstr4 += mudotk*(cs[k][0][i]*clpm - sn[k][0][i]*slpm);
sstr4 += mudotk*(sn[k][0][i]*clpm + cs[k][0][i]*slpm);
}
sfacrl[n] = cstr1;
sfacim[n++] = sstr1;
sfacrl[n] = cstr2;
sfacim[n++] = sstr2;
sfacrl[n] = cstr3;
sfacim[n++] = sstr3;
sfacrl[n] = cstr4;
sfacim[n++] = sstr4;
}
}
}
}
}
/* ----------------------------------------------------------------------
Slab-geometry correction term to dampen inter-slab interactions between
periodically repeating slabs. Yields good approximation to 2D EwaldDipole if
adequate empty space is left between repeating slabs (J. Chem. Phys.
111, 3155). Slabs defined here to be parallel to the xy plane. Also
extended to non-neutral systems (J. Chem. Phys. 131, 094107).
------------------------------------------------------------------------- */
void EwaldDipole::slabcorr()
{
// compute local contribution to global dipole moment
double dipole = 0.0;
double **mu = atom->mu;
int nlocal = atom->nlocal;
for (int i = 0; i < nlocal; i++) dipole += mu[i][2];
// sum local contributions to get global dipole moment
double dipole_all;
MPI_Allreduce(&dipole,&dipole_all,1,MPI_DOUBLE,MPI_SUM,world);
// need to make non-neutral systems and/or
// per-atom energy translationally invariant
if (eflag_atom || fabs(qsum) > SMALL) {
error->all(FLERR,"Cannot (yet) use kspace slab correction with "
"long-range dipoles and non-neutral systems or per-atom energy");
}
// compute corrections
const double e_slabcorr = MY_2PI*(dipole_all*dipole_all/12.0)/volume;
const double qscale = qqrd2e * scale;
if (eflag_global) energy += qscale * e_slabcorr;
// per-atom energy
if (eflag_atom) {
double efact = qscale * MY_2PI/volume/12.0;
for (int i = 0; i < nlocal; i++)
eatom[i] += efact * mu[i][2]*dipole_all;
}
// add on torque corrections
if (atom->torque) {
double ffact = qscale * (-4.0*MY_PI/volume);
double **torque = atom->torque;
for (int i = 0; i < nlocal; i++) {
torque[i][0] += ffact * dipole_all * mu[i][1];
torque[i][1] += -ffact * dipole_all * mu[i][0];
}
}
}
/* ----------------------------------------------------------------------
compute musum,musqsum,mu2
called initially, when particle count changes, when dipoles are changed
------------------------------------------------------------------------- */
void EwaldDipole::musum_musq()
{
const int nlocal = atom->nlocal;
musum = musqsum = mu2 = 0.0;
if (atom->mu_flag) {
double** mu = atom->mu;
double musum_local(0.0), musqsum_local(0.0);
for (int i = 0; i < nlocal; i++) {
musum_local += mu[i][0] + mu[i][1] + mu[i][2];
musqsum_local += mu[i][0]*mu[i][0] + mu[i][1]*mu[i][1] + mu[i][2]*mu[i][2];
}
MPI_Allreduce(&musum_local,&musum,1,MPI_DOUBLE,MPI_SUM,world);
MPI_Allreduce(&musqsum_local,&musqsum,1,MPI_DOUBLE,MPI_SUM,world);
mu2 = musqsum * force->qqrd2e;
}
if (mu2 == 0 && comm->me == 0)
error->all(FLERR,"Using kspace solver EwaldDipole on system with no dipoles");
}
/* ----------------------------------------------------------------------
Newton solver used to find g_ewald for LJ systems
------------------------------------------------------------------------- */
double EwaldDipole::NewtonSolve(double x, double Rc,
bigint natoms, double vol, double b2)
{
double dx,tol;
int maxit;
maxit = 10000; //Maximum number of iterations
tol = 0.00001; //Convergence tolerance
//Begin algorithm
for (int i = 0; i < maxit; i++) {
dx = f(x,Rc,natoms,vol,b2) / derivf(x,Rc,natoms,vol,b2);
x = x - dx; //Update x
if (fabs(dx) < tol) return x;
if (x < 0 || x != x) // solver failed
return -1;
}
return -1;
}
/* ----------------------------------------------------------------------
Calculate f(x)
------------------------------------------------------------------------- */
double EwaldDipole::f(double x, double Rc, bigint natoms, double vol, double b2)
{
double a = Rc*x;
double f = 0.0;
double rg2 = a*a;
double rg4 = rg2*rg2;
double rg6 = rg4*rg2;
double Cc = 4.0*rg4 + 6.0*rg2 + 3.0;
double Dc = 8.0*rg6 + 20.0*rg4 + 30.0*rg2 + 15.0;
f = (b2/(sqrt(vol*powint(x,4)*powint(Rc,9)*natoms)) *
sqrt(13.0/6.0*Cc*Cc + 2.0/15.0*Dc*Dc - 13.0/15.0*Cc*Dc) *
exp(-rg2)) - accuracy;
return f;
}
/* ----------------------------------------------------------------------
Calculate numerical derivative f'(x)
------------------------------------------------------------------------- */
double EwaldDipole::derivf(double x, double Rc,
bigint natoms, double vol, double b2)
{
double h = 0.000001; //Derivative step-size
return (f(x + h,Rc,natoms,vol,b2) - f(x,Rc,natoms,vol,b2)) / h;
}
Reference in New Issue View Git Blame Copy Permalink