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patch_22Nov2016
lammps/src
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Steve Plimpton 59d100ab57 final prep for 22Nov patch
2016-11-22 09:23:02 -07:00
..
ASPHERE
Initialize pointers in ASPHERE
2016-11-07 16:15:39 +01:00
BODY
Initialized pointers in BODY
2016-11-07 16:21:08 +01:00
CLASS2
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
COLLOID
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
COMPRESS
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
CORESHELL
Merge pull request #268 from arielzn/born_dsf
2016-11-09 11:57:09 -07:00
DEPEND
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14805 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-07 21:04:44 +00:00
DIPOLE
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
GPU
add error location propagation to atom->set_mass() and atom->check_mass()
2016-10-26 16:01:40 -04:00
GRANULAR
Initialize pointers in GRANULAR
2016-11-07 16:33:50 +01:00
KIM
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
KOKKOS
Merge pull request #242 from andeplane/vashishta_kokkos
2016-11-17 09:00:03 -07:00
KSPACE
Initialize pointers in KSPACE
2016-11-07 16:54:59 +01:00
MAKE
add restrict to CCFLAGS for makefiles intended for intel compilers
2016-11-16 14:31:10 -05:00
MANYBODY
Merge pull request #271 from akohlmey/tersoff-modc
2016-11-17 09:00:52 -07:00
MC
Initialize pointers in MANYBODY and MC
2016-11-07 17:02:32 +01:00
MEAM
add error location propagation to atom->set_mass() and atom->check_mass()
2016-10-26 16:01:40 -04:00
MISC
Kokkos updates by Stan
2016-11-17 08:58:22 -07:00
MOLECULE
tweaked author syntax
2016-11-22 08:15:13 -07:00
MPIIO
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
OPT
port support for scale[] factor with fix adapt to OPT and USER-OMP
2016-09-20 16:46:54 -04:00
PERI
Initializing pointers in PERI, QEQ and REPLICA
2016-11-07 19:58:27 +01:00
POEMS
Initialize pointers in POEMS
2016-11-10 09:26:52 +01:00
PYTHON
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
QEQ
Initializing pointers in PERI, QEQ and REPLICA
2016-11-07 19:58:27 +01:00
REAX
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
REPLICA
Initializing pointers in PERI, QEQ and REPLICA
2016-11-07 19:58:27 +01:00
RIGID
Initialize pointers in RIGID and SHOCK
2016-11-07 20:22:04 +01:00
SHOCK
Initialize pointers in RIGID and SHOCK
2016-11-07 20:22:04 +01:00
SNAP
Initialize pointers in SNAP and SRD
2016-11-07 20:30:38 +01:00
SRD
Initialize pointers in SNAP and SRD
2016-11-07 20:30:38 +01:00
STUBS
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15375 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-27 22:51:18 +00:00
USER-ATC
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
USER-AWPMD
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
USER-CG-CMM
tweaked author syntax
2016-11-22 08:15:13 -07:00
USER-COLVARS
tweaked author syntax
2016-11-22 08:15:13 -07:00
USER-DIFFRACTION
Initializing pointers in USER-DIFFRACTION and USER-DPD
2016-11-07 20:51:36 +01:00
USER-DPD
be more thorough in initializing optional data in pair style dpd/fdt/energy
2016-11-18 16:18:47 -05:00
USER-DRUDE
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
USER-EFF
tweaked author syntax
2016-11-22 08:15:13 -07:00
USER-FEP
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
USER-H5MD
tweaked author syntax
2016-11-22 08:15:13 -07:00
USER-INTEL
simplify compiling USER-INTEL package, by defaulting to -DLAMMPS_MEMALIGN=64 in case it is not set
2016-11-09 16:53:39 -05:00
USER-LB
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
USER-MANIFOLD
update include statement format
2016-10-05 22:34:44 -04:00
USER-MGPT
add error location propagation to atom->set_mass() and atom->check_mass()
2016-10-26 16:01:40 -04:00
USER-MISC
Merge pull request #285 from akohlmey/fix-ipi-update
2016-11-22 08:48:27 -07:00
USER-MOLFILE
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
USER-NC-DUMP
text edit
2016-10-19 08:41:44 -06:00
USER-OMP
tweaked author syntax
2016-11-22 08:15:13 -07:00
USER-PHONON
tweaked author syntax
2016-11-22 08:15:13 -07:00
USER-QMMM
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
USER-QTB
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
USER-QUIP
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
USER-REAXC
new library functions
2016-10-27 09:34:04 -06:00
USER-SMD
tweaked author syntax
2016-11-22 08:15:13 -07:00
USER-SMTBQ
Kokkos updates by Stan
2016-11-17 08:58:22 -07:00
USER-SPH
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
USER-TALLY
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
USER-VTK
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
VORONOI
Initializing pointers in VORONOI
2016-11-10 09:30:07 +01:00
.gitignore
Merge pull request #286 from akohlmey/small-fixes-and-updates
2016-11-22 08:49:46 -07:00
accelerator_intel.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14767 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-03-22 00:17:14 +00:00
accelerator_kokkos.h
sync with SVN
2016-11-08 08:57:51 -07:00
accelerator_omp.h
…
angle_hybrid.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
angle_hybrid.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
angle_zero.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
angle_zero.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 17:54:49 +00:00
angle.cpp
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
angle.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
atom_map.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
atom_masks.h
…
atom_vec_atomic.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
atom_vec_atomic.h
…
atom_vec_body.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15241 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-01 22:39:26 +00:00
atom_vec_body.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
atom_vec_charge.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
atom_vec_charge.h
…
atom_vec_ellipsoid.cpp
remove executable permissions on non-executables and non-scripts
2016-09-08 14:45:07 -04:00
atom_vec_ellipsoid.h
remove executable permissions on non-executables and non-scripts
2016-09-08 14:45:07 -04:00
atom_vec_hybrid.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
atom_vec_hybrid.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
atom_vec_line.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15240 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-01 21:27:04 +00:00
atom_vec_line.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14480 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-01-23 00:49:16 +00:00
atom_vec_sphere.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
atom_vec_sphere.h
…
atom_vec_tri.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15240 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-01 21:27:04 +00:00
atom_vec_tri.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14506 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-01-27 20:33:55 +00:00
atom_vec.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15080 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-31 16:20:32 +00:00
atom_vec.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
atom.cpp
Merge branch 'master' into bounds-error-with-code-line
2016-10-28 11:11:28 -04:00
atom.h
Merge branch 'master' into bounds-error-with-code-line
2016-10-28 11:11:28 -04:00
balance.cpp
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
balance.h
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
body.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
body.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14421 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-01-11 22:00:29 +00:00
bond_hybrid.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
bond_hybrid.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
bond_zero.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
bond_zero.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 17:54:49 +00:00
bond.cpp
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
bond.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
change_box.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
change_box.h
…
citeme.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
citeme.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
comm_brick.cpp
NULLing ptrs in comm_brick and dump*.cpp
2016-11-07 15:50:18 +01:00
comm_brick.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15187 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 17:39:55 +00:00
comm_tiled.cpp
change purge target in Makefile, also fixed one issue with Make.py
2016-09-30 09:17:55 -06:00
comm_tiled.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
comm.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
comm.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15187 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 17:39:55 +00:00
compute_angle_local.cpp
fix qeq Kokkos bug fix by Stan
2016-09-13 10:54:04 -06:00
compute_angle_local.h
remove vector/array class members shadowing the base class
2016-08-30 07:04:54 -04:00
compute_angle.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:02 -04:00
compute_angle.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14790 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-03-28 15:05:50 +00:00
compute_angmom_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:02 -04:00
compute_angmom_chunk.h
…
compute_bond_local.cpp
dead code removal
2016-10-19 10:42:02 -04:00
compute_bond_local.h
added options to compute bond/local
2016-09-13 17:03:37 -06:00
compute_bond.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:02 -04:00
compute_bond.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14789 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-03-28 15:04:09 +00:00
compute_centro_atom.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:02 -04:00
compute_centro_atom.h
Added axes keyword
2016-07-27 23:06:18 +00:00
compute_chunk_atom.cpp
individual computes do not need to set vector/array to NULL. reordering fixes to silence compiler warnings
2016-08-30 06:41:02 -04:00
compute_chunk_atom.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_cluster_atom.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:02 -04:00
compute_cluster_atom.h
…
compute_cna_atom.cpp
fix off-by one bug when looking for bonds.
2016-08-28 14:20:43 -04:00
compute_cna_atom.h
…
compute_com_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:02 -04:00
compute_com_chunk.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15170 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-14 22:14:34 +00:00
compute_com.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15100 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-02 14:08:20 +00:00
compute_com.h
…
compute_contact_atom.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:02 -04:00
compute_contact_atom.h
…
compute_coord_atom.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
compute_coord_atom.h
…
compute_dihedral_local.cpp
remove vector/array class members shadowing the base class
2016-08-30 07:04:54 -04:00
compute_dihedral_local.h
remove vector/array class members shadowing the base class
2016-08-30 07:04:54 -04:00
compute_dihedral.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_dihedral.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14790 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-03-28 15:05:50 +00:00
compute_dipole_chunk.cpp
update include statement format
2016-10-05 22:34:44 -04:00
compute_dipole_chunk.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14860 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 15:55:54 +00:00
compute_displace_atom.cpp
individual computes do not need to set vector/array to NULL. reordering fixes to silence compiler warnings
2016-08-30 06:41:02 -04:00
compute_displace_atom.h
…
compute_erotate_sphere_atom.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_erotate_sphere_atom.h
…
compute_erotate_sphere.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
compute_erotate_sphere.h
…
compute_group_group.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_group_group.h
…
compute_gyration_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_gyration_chunk.h
…
compute_gyration.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
compute_gyration.h
…
compute_heat_flux.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_heat_flux.h
…
compute_hexorder_atom.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_hexorder_atom.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_improper_local.cpp
remove vector/array class members shadowing the base class
2016-08-30 07:04:54 -04:00
compute_improper_local.h
remove vector/array class members shadowing the base class
2016-08-30 07:04:54 -04:00
compute_improper.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_improper.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14790 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-03-28 15:05:50 +00:00
compute_inertia_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_inertia_chunk.h
…
compute_ke_atom.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_ke_atom.h
…
compute_ke.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
compute_ke.h
…
compute_msd_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_msd_chunk.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_msd.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_msd.h
Added average keyword
2015-12-02 05:06:52 +00:00
compute_omega_chunk.cpp
sync with 7Sep16 patch
2016-09-06 17:00:32 -06:00
compute_omega_chunk.h
…
compute_orientorder_atom.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_orientorder_atom.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_pair_local.cpp
individual computes do not need to set vector/array to NULL. reordering fixes to silence compiler warnings
2016-08-30 06:41:02 -04:00
compute_pair_local.h
remove vector/array class members shadowing the base class
2016-08-30 07:04:54 -04:00
compute_pair.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_pair.h
…
compute_pe_atom.cpp
remove executable permissions on non-executables and non-scripts
2016-09-08 14:45:07 -04:00
compute_pe_atom.h
remove executable permissions on non-executables and non-scripts
2016-09-08 14:45:07 -04:00
compute_pe.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15291 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-12 22:59:27 +00:00
compute_pe.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15291 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-12 22:59:27 +00:00
compute_pressure.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_pressure.h
initial import of adapted gREM code by David Stelter and Edyta Malolepsza
2016-11-13 18:44:10 -05:00
compute_property_atom.cpp
individual computes do not need to set vector/array to NULL. reordering fixes to silence compiler warnings
2016-08-30 06:41:02 -04:00
compute_property_atom.h
remove vector/array class members shadowing the base class
2016-08-30 07:04:54 -04:00
compute_property_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_property_chunk.h
…
compute_property_local.cpp
individual computes do not need to set vector/array to NULL. reordering fixes to silence compiler warnings
2016-08-30 06:41:02 -04:00
compute_property_local.h
remove vector/array class members shadowing the base class
2016-08-30 07:04:54 -04:00
compute_rdf.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
compute_rdf.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
compute_reduce_region.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15083 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-31 16:33:07 +00:00
compute_reduce_region.h
…
compute_reduce.cpp
Kokkos updates by Stan
2016-11-17 08:58:22 -07:00
compute_reduce.h
…
compute_slice.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:03 -04:00
compute_slice.h
…
compute_stress_atom.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:04 -04:00
compute_stress_atom.h
…
compute_temp_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:04 -04:00
compute_temp_chunk.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_temp_com.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
compute_temp_com.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_temp_deform.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15083 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-31 16:33:07 +00:00
compute_temp_deform.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_temp_partial.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15083 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-31 16:33:07 +00:00
compute_temp_partial.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_temp_profile.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:04 -04:00
compute_temp_profile.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_temp_ramp.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15083 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-31 16:33:07 +00:00
compute_temp_ramp.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_temp_region.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:04 -04:00
compute_temp_region.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_temp_sphere.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:04 -04:00
compute_temp_sphere.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_temp.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
compute_temp.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
compute_torque_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:04 -04:00
compute_torque_chunk.h
…
compute_vacf.cpp
remove executable permissions on non-executables and non-scripts
2016-09-08 14:45:07 -04:00
compute_vacf.h
remove executable permissions on non-executables and non-scripts
2016-09-08 14:45:07 -04:00
compute_vcm_chunk.cpp
Fixed initialization of arrays in computes
2016-08-24 17:26:04 -04:00
compute_vcm_chunk.h
…
compute.cpp
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
compute.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
create_atoms.cpp
new library functions
2016-10-27 09:34:04 -06:00
create_atoms.h
…
create_bonds.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15348 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-22 21:19:08 +00:00
create_bonds.h
…
create_box.cpp
make certain, that atom->maxspecial is incremented with extra special space
2016-10-21 11:55:36 -04:00
create_box.h
…
delete_atoms.cpp
new library functions
2016-10-27 09:34:04 -06:00
delete_atoms.h
new library functions
2016-10-27 09:34:04 -06:00
delete_bonds.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
delete_bonds.h
…
Depend.sh
Kokkos updates by Stan
2016-11-17 08:58:22 -07:00
dihedral_hybrid.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
dihedral_hybrid.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
dihedral_zero.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
dihedral_zero.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 17:54:49 +00:00
dihedral.cpp
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
dihedral.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
displace_atoms.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14506 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-01-27 20:33:55 +00:00
displace_atoms.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
domain.cpp
new library functions
2016-10-27 09:34:04 -06:00
domain.h
new library functions
2016-10-27 09:34:04 -06:00
dump_atom.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15428 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-03 16:29:35 +00:00
dump_atom.h
…
dump_cfg.cpp
NULLing ptrs in comm_brick and dump*.cpp
2016-11-07 15:50:18 +01:00
dump_cfg.h
remove executable permissions on non-executables and non-scripts
2016-09-08 14:45:07 -04:00
dump_custom.cpp
NULL ptrs in dump_custom and dump_image
2016-11-07 15:56:47 +01:00
dump_custom.h
added LAST option to dump_modify thresh, more restart info printed out to screen
2016-10-11 12:39:52 -06:00
dump_dcd.cpp
NULLing ptrs in comm_brick and dump*.cpp
2016-11-07 15:50:18 +01:00
dump_dcd.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14602 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 16:10:43 +00:00
dump_image.cpp
NULL ptrs in dump_custom and dump_image
2016-11-07 15:56:47 +01:00
dump_image.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15309 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-14 19:42:39 +00:00
dump_local.cpp
NULLing ptrs in comm_brick and dump*.cpp
2016-11-07 15:50:18 +01:00
dump_local.h
…
dump_movie.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
dump_movie.h
…
dump_xyz.cpp
NULLing ptrs in comm_brick and dump*.cpp
2016-11-07 15:50:18 +01:00
dump_xyz.h
…
dump.cpp
dead code removal
2016-10-19 10:42:02 -04:00
dump.h
fix bug in recent dump changes for -DLAMMPS_BIGBIG
2016-08-22 14:36:47 -04:00
error.cpp
Make exceptions control flow and functions optional
2016-09-16 18:57:37 -04:00
error.h
Make exceptions control flow and functions optional
2016-09-16 18:57:37 -04:00
exceptions.h
Make exceptions control flow and functions optional
2016-09-16 18:57:37 -04:00
finish.cpp
avoid NaN for variance from average output
2016-11-13 18:46:55 -05:00
finish.h
…
fix_adapt.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
fix_adapt.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14655 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-17 15:56:48 +00:00
fix_addforce.cpp
correct bug and synchronize fix addforce respa level init with other fixes
2016-09-27 17:36:02 -04:00
fix_addforce.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_ave_atom.cpp
fix argument indexing bug in fix ave/atom
2016-09-19 23:24:37 -04:00
fix_ave_atom.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_ave_chunk.cpp
null-ing of pointers and a couple select integers for fix ave/chunk
2016-08-30 06:41:50 -04:00
fix_ave_chunk.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
fix_ave_correlate.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_ave_correlate.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
fix_ave_histo_weight.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15413 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-30 21:24:55 +00:00
fix_ave_histo_weight.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
fix_ave_histo.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_ave_histo.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15463 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-09 14:10:55 +00:00
fix_ave_time.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_ave_time.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15463 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-09 14:10:55 +00:00
fix_aveforce.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_aveforce.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_balance.cpp
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
fix_balance.h
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
fix_box_relax.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_box_relax.h
…
fix_controller.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_controller.h
remove executable permissions on non-executables and non-scripts
2016-09-08 14:45:07 -04:00
fix_deform.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_deform.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14064 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-09-24 20:34:59 +00:00
fix_deprecated.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
fix_deprecated.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15104 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-02 14:14:17 +00:00
fix_drag.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_drag.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_dt_reset.cpp
enable dynamic groups for fix dt/reset
2016-09-30 09:09:44 -04:00
fix_dt_reset.h
…
fix_enforce2d.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_enforce2d.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15189 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 20:54:47 +00:00
fix_external.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_external.h
…
fix_gravity.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_gravity.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_group.cpp
support dynamic groups with run style respa
2016-09-29 15:13:46 -04:00
fix_group.h
support dynamic groups with run style respa
2016-09-29 15:13:46 -04:00
fix_halt.cpp
dead code removal
2016-10-19 10:42:02 -04:00
fix_halt.h
apply corrections to issues reported by static code analysis
2016-10-24 17:12:28 -04:00
fix_heat.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_heat.h
…
fix_indent.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_indent.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_langevin.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_langevin.h
Further tweaked the flangevin issue
2016-01-21 18:16:07 +00:00
fix_lineforce.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_lineforce.h
…
fix_minimize.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_minimize.h
…
fix_momentum.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15089 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-31 16:50:28 +00:00
fix_momentum.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14876 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-26 18:32:11 +00:00
fix_move.cpp
doc page sync with SVN
2016-09-21 20:54:20 -06:00
fix_move.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
fix_nh_sphere.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15369 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-27 14:04:56 +00:00
fix_nh_sphere.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14449 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-01-15 15:53:23 +00:00
fix_nh.cpp
allow to extract properties in NH integrator only when they are active
2016-11-14 09:27:33 -05:00
fix_nh.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15369 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-27 14:04:56 +00:00
fix_nph_sphere.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
fix_nph_sphere.h
…
fix_nph.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
fix_nph.h
…
fix_npt_sphere.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
fix_npt_sphere.h
…
fix_npt.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
fix_npt.h
…
fix_nve_limit.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_nve_limit.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
fix_nve_noforce.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_nve_noforce.h
…
fix_nve_sphere.cpp
Kokkos lib update
2016-09-08 13:56:18 -06:00
fix_nve_sphere.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15369 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-27 14:04:56 +00:00
fix_nve.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_nve.h
…
fix_nvt_sllod.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
fix_nvt_sllod.h
…
fix_nvt_sphere.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
fix_nvt_sphere.h
…
fix_nvt.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
fix_nvt.h
…
fix_planeforce.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_planeforce.h
…
fix_press_berendsen.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_press_berendsen.h
…
fix_print.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_print.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_property_atom.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_property_atom.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14912 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-30 18:07:40 +00:00
fix_read_restart.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_read_restart.h
…
fix_recenter.cpp
bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting
2016-10-13 16:55:53 -06:00
fix_recenter.h
…
fix_respa.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_respa.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13757 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-07-28 16:04:10 +00:00
fix_restrain.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_restrain.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_setforce.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_setforce.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_shear_history.cpp
new fix ti/spring command, remove fix ti/rs
2016-09-20 10:44:12 -06:00
fix_shear_history.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15333 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-16 20:00:36 +00:00
fix_spring_chunk.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_spring_chunk.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_spring_rg.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_spring_rg.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_spring_self.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_spring_self.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_spring.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_spring.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_store_force.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_store_force.h
…
fix_store_state.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_store_state.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14423 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-01-11 23:38:16 +00:00
fix_store.cpp
added LAST option to dump_modify thresh, more restart info printed out to screen
2016-10-11 12:39:52 -06:00
fix_store.h
sync with SVN
2016-09-23 14:52:45 -06:00
fix_temp_berendsen.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_temp_berendsen.h
…
fix_temp_csld.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_temp_csld.h
…
fix_temp_csvr.cpp
make certain, that -log() doesn't overflow and assign a suitable maximum number instead.
2016-09-15 14:55:32 -04:00
fix_temp_csvr.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14582 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-08 16:18:20 +00:00
fix_temp_rescale.cpp
patch to add DPD-VV
2016-10-12 07:35:47 -06:00
fix_temp_rescale.h
…
fix_tmd.cpp
correct logic bug in bufix for fix tmd
2016-10-01 06:26:52 -04:00
fix_tmd.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_vector.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_vector.h
…
fix_viscous.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_viscous.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_wall_harmonic.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_wall_harmonic.h
…
fix_wall_lj93.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_wall_lj93.h
…
fix_wall_lj126.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_wall_lj126.h
…
fix_wall_lj1043.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_wall_lj1043.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
fix_wall_reflect.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_wall_reflect.h
…
fix_wall_region.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_wall_region.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix_wall.cpp
Fixed initialization of arrays in fixes
2016-08-28 22:23:22 -04:00
fix_wall.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
fix.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
fix.h
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
force.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
force.h
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
group.cpp
Kokkos lib update
2016-09-08 13:56:18 -06:00
group.h
undo obsoleted changes to group command by iain bethune
2016-08-22 15:23:16 -04:00
image.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
image.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
imbalance_group.cpp
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
imbalance_group.h
new verion of balance weighting
2016-09-23 14:37:53 -06:00
imbalance_neigh.cpp
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
imbalance_neigh.h
new verion of balance weighting
2016-09-23 14:37:53 -06:00
imbalance_store.cpp
new verion of balance weighting
2016-09-23 14:37:53 -06:00
imbalance_store.h
new verion of balance weighting
2016-09-23 14:37:53 -06:00
imbalance_time.cpp
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
imbalance_time.h
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
imbalance_var.cpp
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
imbalance_var.h
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
imbalance.cpp
new verion of balance weighting
2016-09-23 14:37:53 -06:00
imbalance.h
adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh
2016-10-05 15:46:20 -06:00
improper_hybrid.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
improper_hybrid.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
improper_zero.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
improper_zero.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 17:54:49 +00:00
improper.cpp
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
improper.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
info.cpp
provide an accessor for names of LAMMPS variables
2016-10-17 19:56:18 -04:00
info.h
provide an accessor for names of LAMMPS variables
2016-10-17 19:56:18 -04:00
input.cpp
sync with SVN
2016-11-08 08:57:51 -07:00
input.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
Install.sh
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
integrate.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14767 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-03-22 00:17:14 +00:00
integrate.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15288 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-12 22:36:08 +00:00
irregular.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
irregular.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
kspace.cpp
Initialize pointers in KSPACE
2016-11-07 16:54:59 +01:00
kspace.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
lammps.cpp
simpler variant of the segfault workaround, that does not offend Clang c++.
2016-11-10 14:12:02 -05:00
lammps.h
improve help and it through a pager, when screen == stdout
2016-11-07 17:10:12 -05:00
lattice.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15157 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-08 15:41:04 +00:00
lattice.h
…
library.cpp
new library functions
2016-10-27 09:34:04 -06:00
library.h
new library functions
2016-10-27 09:34:04 -06:00
lmptype.h
make PRD code compatible with -DLAMMPS_BIGBIG
2016-10-19 10:43:25 -04:00
lmpwindows.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
main.cpp
Implemented optional C++ exceptions in Error class
2016-08-24 15:31:30 -04:00
Make.py
change purge target in Makefile, also fixed one issue with Make.py
2016-09-30 09:17:55 -06:00
Make.sh
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
Makefile
forgot to include USER-NC-DUMP in PACKUSER variable
2016-10-18 14:45:25 -04:00
Makefile.list
…
Makefile.package.empty
…
Makefile.package.settings.empty
…
math_complex.h
…
math_const.h
comm tiled bug fix
2016-09-16 10:31:52 -06:00
math_extra.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15369 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-27 14:04:56 +00:00
math_extra.h
fix qeq Kokkos bug fix by Stan
2016-09-13 10:54:04 -06:00
math_special.cpp
Stan bug fixes for fix reaxc/bonds/kk
2016-11-09 15:47:50 -07:00
math_special.h
Fixing compile error
2016-04-26 22:32:03 +00:00
math_vector.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
memory.cpp
simplify compiling USER-INTEL package, by defaulting to -DLAMMPS_MEMALIGN=64 in case it is not set
2016-11-09 16:53:39 -05:00
memory.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
min_cg.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
min_cg.h
…
min_fire.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
min_fire.h
…
min_hftn.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15468 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-10 14:59:04 +00:00
min_hftn.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15393 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-29 14:28:58 +00:00
min_linesearch.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
min_linesearch.h
…
min_quickmin.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
min_quickmin.h
…
min_sd.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
min_sd.h
…
min.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15393 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-29 14:28:58 +00:00
min.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
minimize.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
minimize.h
Adding error checks for Kokkos-incompatible features
2016-01-28 23:32:16 +00:00
modify.cpp
added LAST option to dump_modify thresh, more restart info printed out to screen
2016-10-11 12:39:52 -06:00
modify.h
added LAST option to dump_modify thresh, more restart info printed out to screen
2016-10-11 12:39:52 -06:00
molecule.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
molecule.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15304 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-13 22:55:25 +00:00
mpiio.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14655 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-17 15:56:48 +00:00
my_page.h
simplify compiling USER-INTEL package, by defaulting to -DLAMMPS_MEMALIGN=64 in case it is not set
2016-11-09 16:53:39 -05:00
my_pool_chunk.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15242 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-01 22:39:55 +00:00
neigh_bond.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
neigh_bond.h
…
neigh_derive.cpp
dead code removal
2016-10-19 10:42:02 -04:00
neigh_derive.h
…
neigh_full.cpp
…
neigh_full.h
…
neigh_gran.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15333 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-16 20:00:36 +00:00
neigh_gran.h
…
neigh_half_bin.cpp
…
neigh_half_bin.h
…
neigh_half_multi.cpp
…
neigh_half_multi.h
…
neigh_half_nsq.cpp
…
neigh_half_nsq.h
…
neigh_list.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15340 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-18 16:59:02 +00:00
neigh_list.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15329 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-15 23:14:13 +00:00
neigh_request.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15274 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-09 20:41:07 +00:00
neigh_request.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15390 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-28 18:09:57 +00:00
neigh_respa.cpp
…
neigh_respa.h
…
neigh_shardlow.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15329 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-15 23:14:13 +00:00
neigh_shardlow.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14582 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-08 16:18:20 +00:00
neigh_stencil.cpp
…
neighbor.cpp
undo changes that belong to a different branch or are redundant
2016-08-22 15:46:01 -04:00
neighbor.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15364 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-23 00:24:54 +00:00
output.cpp
avoid tiny memory leak, when the restart command is specified multiple times
2016-11-01 21:39:12 -04:00
output.h
Use factory for dump style creation
2016-09-08 09:38:51 -04:00
pack.h
…
Package.sh
enforce C or POSIX locale in all shell scripts and turn of enforced global grep options
2016-08-27 01:57:45 -04:00
pair_beck.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_beck.h
…
pair_born_coul_dsf.cpp
Stan bug fixes for fix reaxc/bonds/kk
2016-11-09 15:47:50 -07:00
pair_born_coul_dsf.h
pair style born/coul/dsf added with its coreshell version
2016-11-08 11:32:38 +01:00
pair_born_coul_wolf.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_born_coul_wolf.h
…
pair_born.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_born.h
…
pair_buck_coul_cut.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_buck_coul_cut.h
…
pair_buck.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_buck.h
…
pair_coul_cut.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_coul_cut.h
…
pair_coul_debye.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
pair_coul_debye.h
…
pair_coul_dsf.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_coul_dsf.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
pair_coul_streitz.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14494 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-01-25 23:04:56 +00:00
pair_coul_streitz.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14494 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-01-25 23:04:56 +00:00
pair_coul_wolf.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_coul_wolf.h
…
pair_dpd_tstat.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_dpd_tstat.h
…
pair_dpd.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_dpd.h
…
pair_gauss.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_gauss.h
add mixing for pair styles gauss and gauss/cut contributed by andrew jewett. also add support for write_data.
2016-10-18 22:26:47 -04:00
pair_hybrid_overlay.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_hybrid_overlay.h
…
pair_hybrid.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
pair_hybrid.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14860 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 15:55:54 +00:00
pair_lj96_cut.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj96_cut.h
…
pair_lj_cubic.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_cubic.h
…
pair_lj_cut_coul_cut.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_cut_coul_cut.h
…
pair_lj_cut_coul_debye.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
pair_lj_cut_coul_debye.h
…
pair_lj_cut_coul_dsf.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_cut_coul_dsf.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
pair_lj_cut.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_cut.h
…
pair_lj_expand.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_expand.h
…
pair_lj_gromacs_coul_gromacs.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_gromacs_coul_gromacs.h
…
pair_lj_gromacs.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_gromacs.h
…
pair_lj_smooth_linear.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_smooth_linear.h
…
pair_lj_smooth.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_lj_smooth.h
…
pair_mie_cut.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_mie_cut.h
…
pair_morse.cpp
Merge pull request #247 from akohlmey/bounds-error-with-code-line
2016-11-04 10:58:14 -06:00
pair_morse.h
…
pair_soft.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_soft.h
…
pair_table.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_table.h
…
pair_yukawa.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_yukawa.h
…
pair_zbl.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_zbl.h
Modifed ZBL to accomodate mixing
2015-09-23 00:30:30 +00:00
pair_zero.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
pair_zero.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14926 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-03 16:01:16 +00:00
pair.cpp
avoid memory leaks when using kspace solvers for lennard-jones
2016-11-01 14:55:13 -04:00
pair.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
pointers.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
procmap.cpp
…
procmap.h
…
Purge.list
need to add removed fix ti/rs to purge list
2016-09-21 07:28:27 -04:00
python_wrapper.h
…
random_mars.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
random_mars.h
…
random_park.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
random_park.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14860 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 15:55:54 +00:00
rcb.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
rcb.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
read_data.cpp
Merge branch 'master' into bounds-error-with-code-line
2016-10-28 11:11:28 -04:00
read_data.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 17:54:49 +00:00
read_dump.cpp
new library functions
2016-10-27 09:34:04 -06:00
read_dump.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
read_restart.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15180 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-15 23:10:12 +00:00
read_restart.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
reader_native.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
reader_native.h
…
reader_xyz.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
reader_xyz.h
…
reader.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
reader.h
…
region_block.cpp
whitespace cleanup
2016-10-24 17:13:21 -04:00
region_block.h
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
region_cone.cpp
whitespace cleanup
2016-10-24 17:13:21 -04:00
region_cone.h
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
region_cylinder.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
region_cylinder.h
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
region_intersect.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
region_intersect.h
bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting
2016-10-13 16:55:53 -06:00
region_plane.cpp
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
region_plane.h
…
region_prism.cpp
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
region_prism.h
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
region_sphere.cpp
whitespace cleanup
2016-10-24 17:13:21 -04:00
region_sphere.h
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
region_union.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
region_union.h
bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting
2016-10-13 16:55:53 -06:00
region.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
region.h
new library functions
2016-10-27 09:34:04 -06:00
replicate.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-06 23:21:39 +00:00
replicate.h
…
rerun.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14779 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-03-22 13:45:31 +00:00
rerun.h
…
respa.cpp
NULLed ptrs in files
2016-11-07 16:07:37 +01:00
respa.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14582 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-08 16:18:20 +00:00
run.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:48:15 +00:00
run.h
…
set.cpp
add error location propagation to force->bounds() and force->boundsbig()
2016-10-26 15:53:02 -04:00
set.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-15 15:26:57 +00:00
special.cpp
new fix wall/gran/region command, REBO bug fix, new example log files
2016-10-06 15:47:41 -06:00
special.h
…
suffix.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
thermo.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15468 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-10 14:59:04 +00:00
thermo.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15426 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-03 16:09:38 +00:00
timer.cpp
reapply changes to the timer class that got lost somehow
2016-10-18 14:05:08 -04:00
timer.h
reapply changes to the timer class that got lost somehow
2016-10-18 14:05:08 -04:00
universe.cpp
initialize 'nper'
2016-11-11 07:47:42 -05:00
universe.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
update.cpp
Use factory for minimize style creation
2016-09-08 09:38:51 -04:00
update.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
variable.cpp
add error location propagation to atom->set_mass() and atom->check_mass()
2016-10-26 16:01:40 -04:00
variable.h
changes to imbalance weight factors
2016-10-05 10:33:39 -06:00
velocity.cpp
add error location propagation to atom->set_mass() and atom->check_mass()
2016-10-26 16:01:40 -04:00
velocity.h
…
verlet.cpp
new library functions
2016-10-27 09:34:04 -06:00
verlet.h
new library functions
2016-10-27 09:34:04 -06:00
version.h
final prep for 22Nov patch
2016-11-22 09:23:02 -07:00
write_coeff.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15387 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-28 13:51:40 +00:00
write_coeff.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14877 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-26 18:33:10 +00:00
write_data.cpp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15250 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-01 23:31:09 +00:00
write_data.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-30 20:04:06 +00:00
write_dump.cpp
added LAST option to dump_modify thresh, more restart info printed out to screen
2016-10-11 12:39:52 -06:00
write_dump.h
…
write_restart.cpp
Fixing restart error
2016-04-26 23:00:32 +00:00
write_restart.h
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14860 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-04-22 15:55:54 +00:00