add argparse support to Install.py for kim library

This commit is contained in:
Axel Kohlmeyer
2019-01-14 17:40:18 -05:00
parent dc5385b290
commit 54679b69f4

View File

@ -6,7 +6,16 @@
from __future__ import print_function
import sys,os,re,subprocess,shutil
sys.path.append('..')
from install_helpers import error,fullpath,which,geturl
from install_helpers import fullpath,geturl
from argparse import ArgumentParser
parser = ArgumentParser(prog='Install.py',
description="LAMMPS library build wrapper script")
# settings
thisdir = fullpath('.')
version = "kim-api-v1.9.5"
# help message
@ -20,27 +29,12 @@ Syntax from lib dir: python Install.py -b -v version -a kim-name
or: python Install.py -n -a kim-name
or: python Install.py -p /usr/local/open-kim -a kim-name
specify one or more options, order does not matter
-v = version of KIM API library to use
default = kim-api-v1.9.5 (current as of May 2018)
-b = download and build base KIM API library with example Models
this will delete any previous installation in the current folder
-n = do NOT download and build base KIM API library.
Use an existing installation
-p = specify location of KIM API installation (implies -n)
-a = add single KIM model or model driver with kim-name
to existing KIM API lib (see example below).
If kim-name = everything, then rebuild KIM API library with
*all* available OpenKIM Models (make take a long time).
-vv = be more verbose about what is happening while the script runs
Examples:
make lib-kim args="-b" # install KIM API lib with only example models
make lib-kim args="-a Glue_Ercolessi_Adams_Al__MO_324507536345_001" # Ditto plus one model
make lib-kim args="-b -a Glue_Ercolessi_Adams_Al__MO_324507536345_001" # Ditto plus one model
make lib-kim args="-b -a everything" # install KIM API lib with all models
make lib-kim args="-n -a EAM_Dynamo_Ackland_W__MO_141627196590_002" # only add one model or model driver
make lib-kim args="-n -a EAM_Dynamo_Ackland_W__MO_141627196590_002" # only add one model or model driver
See the list of KIM model drivers here:
https://openkim.org/kim-items/model-drivers/alphabetical
@ -53,62 +47,47 @@ https://openkim.org/kim-api
in the "What is in the KIM API source package?" section
"""
# parse args
pgroup = parser.add_mutually_exclusive_group()
pgroup.add_argument("-b", "--build", action="store_true",
help="download and build base KIM API library with example Models.")
pgroup.add_argument("-n", "--nochange", action="store_true",
help="no changes to the base KIM API. Use currently configured one. ")
pgroup.add_argument("-p", "--path",
help="specify location of KIM API installation.")
parser.add_argument("-v", "--version", default=version,
help="set version of KIM API library to download and build (default: %s)" % version)
parser.add_argument("-a", "--add",
help="add single KIM model or model driver. If adding 'everything', then all available OpenKIM models are added (may take a long time)")
parser.add_argument("-vv", "--verbose", action="store_true",
help="be more verbose about is happening while this script runs")
args = sys.argv[1:]
nargs = len(args)
if nargs == 0: error(help=help)
args = parser.parse_args()
thisdir = fullpath('.')
version = "kim-api-v1.9.5"
# print help message and exit, if neither build nor path options are given
if args.build == False and not args.path and args.nochange == False:
parser.print_help()
sys.exit(help)
buildflag = False
buildflag = args.build
pathflag = args.path != None
addflag = args.add != None
addmodelname = args.add
everythingflag = False
addflag = False
verboseflag = False
pathflag = False
if addflag and addmodelname == "everything":
everythingflag = True
buildflag = True
verboseflag = args.verbose
iarg = 0
while iarg < len(args):
if args[iarg] == "-v":
if iarg+2 > len(args): error(help=help)
version = args[iarg+1]
iarg += 2
elif args[iarg] == "-b":
buildflag = True
iarg += 1
elif args[iarg] == "-n":
buildflag = False
iarg += 1
elif args[iarg] == "-p":
if iarg+2 > len(args): error(help=help)
kimdir = fullpath(args[iarg+1])
pathflag = True
buildflag = False
iarg += 2
elif args[iarg] == "-a":
addflag = True
if iarg+2 > len(args): error(help=help)
addmodelname = args[iarg+1]
if addmodelname == "everything":
buildflag = True
everythingflag = True
addflag = False
iarg += 2
elif args[iarg] == "-vv":
verboseflag = True
iarg += 1
else: error(help=help)
if pathflag:
kimdir = args.path
if not os.path.isdir(kimdir): sys.exit("KIM API path %s does not exist" % kimdir)
kimdir = fullpath(kimdir)
url = "https://s3.openkim.org/kim-api/%s.txz" % version
# set KIM API directory
if pathflag:
if not os.path.isdir(kimdir):
print("\nkim-api is not installed at %s" % kimdir)
error(help=help)
# configure LAMMPS to use existing kim-api installation
with open("%s/Makefile.KIM_DIR" % thisdir, 'w') as mkfile:
mkfile.write("KIM_INSTALL_DIR=%s\n\n" % kimdir)
@ -196,8 +175,7 @@ if addflag:
kimdir = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True)
if not os.path.isdir(kimdir):
print("\nkim-api is not installed")
error(help=help)
sys.exit("\nkim-api is not installed")
# download single model
cmd = '%s/bin/kim-api-v1-collections-management install system %s' % (kimdir.decode("UTF-8"), addmodelname)