tx258/lammps-gran-kokkos
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

final testing

Browse Source
This commit is contained in:
Steve Plimpton
2018-08-31 16:21:45 -06:00
parent bc62002b1c
commit f66ce801ad
4 changed files with 43 additions and 29 deletions
Download Patch File Download Diff File Expand all files Collapse all files

67
examples/COUPLE/lammps_vasp/log.client.output
View File

@ -1,63 +1,76 @@
LAMMPS (20 Apr 2018)
LAMMPS (22 Aug 2018)
# small W unit cell for use with VASP
#message client aimd file tmp.couple
message client aimd zmq localhost:5555
#message client aimd mpi/two tmp.couple
#message client aimd mpi/one tmp.couple
variable mode index file
units real
if "${mode} == file" then "message client md file tmp.couple" elif "${mode} == zmq" "message client md zmq localhost:5555"
message client md zmq localhost:5555
variable x index 1
variable y index 1
variable z index 1
units metal
atom_style atomic
atom_modify sort 0 0.0 map yes
read_data data.W
orthogonal box = (0 0 0) to (3.16 3.16 3.16)
1 by 1 by 1 MPI processor grid
1 by 1 by 2 MPI processor grid
reading atoms ...
2 atoms
mass 1 1.0
mass 1 183.85
#velocity all create 300.0 87287 loop geom
replicate $x $y $z
replicate 1 $y $z
replicate 1 1 $z
replicate 1 1 1
orthogonal box = (0 0 0) to (3.16 3.16 3.16)
1 by 1 by 2 MPI processor grid
2 atoms
Time spent = 0.000148058 secs
velocity all create 300.0 87287 loop geom
neighbor 0.3 bin
neigh_modify delay 0 every 10 check no
fix 1 all nve
fix 2 all message/aimd
fix 2 all client/md
fix_modify 2 energy yes
thermo 1
run 2
run 3
Per MPI rank memory allocation (min/avg/max) = 1.8 | 1.8 | 1.8 Mbytes
Step Temp E_pair E_mol TotEng Press
0 0 0 0 -48.069571 -172694.2
1 0.063865861 0 0 -48.069381 -172693.93
2 0.25546344 0 0 -48.06881 -172693.1
Loop time of 0.281842 on 1 procs for 2 steps with 2 atoms
0 300 0 0 -48.030793 -78159.503
1 298.24318 0 0 -48.03102 -78167.19
2 296.85584 0 0 -48.031199 -78173.26
3 295.83795 0 0 -48.031331 -78177.714
Loop time of 0.457491 on 2 procs for 3 steps with 2 atoms
Performance: 0.613 ns/day, 39.145 hours/ns, 7.096 timesteps/s
0.0% CPU use with 1 MPI tasks x no OpenMP threads
Performance: 0.567 ns/day, 42.360 hours/ns, 6.558 timesteps/s
50.1% CPU use with 2 MPI tasks x no OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 0 | 0 | 0 | 0.0 | 0.00
Neigh | 0 | 0 | 0 | 0.0 | 0.00
Comm | 3.0994e-06 | 3.0994e-06 | 3.0994e-06 | 0.0 | 0.00
Output | 8.9169e-05 | 8.9169e-05 | 8.9169e-05 | 0.0 | 0.03
Modify | 0.28174 | 0.28174 | 0.28174 | 0.0 | 99.97
Other | | 5.96e-06 | | | 0.00
Comm | 1.3828e-05 | 2.9922e-05 | 4.6015e-05 | 0.0 | 0.01
Output | 7.5817e-05 | 9.3937e-05 | 0.00011206 | 0.0 | 0.02
Modify | 0.45735 | 0.45736 | 0.45736 | 0.0 | 99.97
Other | | 1.204e-05 | | | 0.00
Nlocal: 2 ave 2 max 2 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 7 ave 7 max 7 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nlocal: 1 ave 1 max 1 min
Histogram: 2 0 0 0 0 0 0 0 0 0
Nghost: 4 ave 4 max 4 min
Histogram: 2 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Histogram: 2 0 0 0 0 0 0 0 0 0
Total # of neighbors = 0
Ave neighs/atom = 0
Neighbor list builds = 0
Dangerous builds not checked
Total wall time: 0:00:06
Total wall time: 0:01:21

1
src/MESSAGE/fix_client_md.cpp
View File

@ -18,6 +18,7 @@
#include "atom.h"
#include "comm.h"
#include "domain.h"
#include "force.h"
#include "memory.h"
#include "error.h"

2
src/MESSAGE/fix_client_md.h
View File

@ -40,7 +40,7 @@ class FixClientMD : public Fix {
int maxatom,units,server_error;
double eng;
double inv_nprocs;
double fconvert,econvert,vconvert;
double fconvert,econvert,pconvert;
double box[3][3];
double *xpbc;

2
src/MESSAGE/server_md.h
View File

@ -26,7 +26,7 @@ class ServerMD : protected Pointers {
private:
int units;
double fconvert,econvert,vconvert;
double fconvert,econvert,pconvert;
double **fcopy;
void box_change(double *, double *);