/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://www.lammps.org/, Sandia National Laboratories LAMMPS Development team: developers@lammps.org Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ // unit tests for improper styles intended for molecular systems #include "error_stats.h" #include "test_config.h" #include "test_config_reader.h" #include "test_main.h" #include "yaml_reader.h" #include "yaml_writer.h" #include "gmock/gmock.h" #include "gtest/gtest.h" #include "atom.h" #include "compute.h" #include "exceptions.h" #include "fix.h" #include "fmt/format.h" #include "force.h" #include "improper.h" #include "info.h" #include "input.h" #include "lammps.h" #include "modify.h" #include "platform.h" #include "universe.h" #include #include #include #include #include #include #include #include #include using ::testing::HasSubstr; using ::testing::StartsWith; using namespace LAMMPS_NS; void cleanup_lammps(LAMMPS *&lmp, const TestConfig &cfg) { platform::unlink(cfg.basename + ".restart"); platform::unlink(cfg.basename + ".data"); platform::unlink(cfg.basename + "-coeffs.in"); delete lmp; lmp = nullptr; } LAMMPS *init_lammps(LAMMPS::argv &args, const TestConfig &cfg, const bool newton) { LAMMPS *lmp; lmp = new LAMMPS(args, MPI_COMM_WORLD); // check if prerequisite styles are available Info *info = new Info(lmp); int nfail = 0; for (const auto &prerequisite : cfg.prerequisites) { std::string style = prerequisite.second; // this is a test for improper styles, so if the suffixed // version is not available, there is no reason to test. if (prerequisite.first == "improper") { if (lmp->suffix_enable) { style += "/"; style += lmp->suffix; } } if (!info->has_style(prerequisite.first, style)) ++nfail; } delete info; if (nfail > 0) { cleanup_lammps(lmp, cfg); return nullptr; } // utility lambdas to improve readability auto command = [&](const std::string &line) { lmp->input->one(line); }; auto parse_input_script = [&](const std::string &filename) { lmp->input->file(filename.c_str()); }; if (newton) { command("variable newton_bond index on"); } else { command("variable newton_bond index off"); } command("variable input_dir index " + INPUT_FOLDER); for (const auto &pre_command : cfg.pre_commands) { command(pre_command); } std::string input_file = platform::path_join(INPUT_FOLDER, cfg.input_file); parse_input_script(input_file); command("improper_style " + cfg.improper_style); for (const auto &improper_coeff : cfg.improper_coeff) { command("improper_coeff " + improper_coeff); } for (const auto &post_command : cfg.post_commands) { command(post_command); } command("run 0 post no"); command("variable write_data_pair index ii"); command("write_restart " + cfg.basename + ".restart"); command("write_data " + cfg.basename + ".data pair ${write_data_pair}"); command("write_coeff " + cfg.basename + "-coeffs.in"); return lmp; } void run_lammps(LAMMPS *lmp) { // utility lambda to improve readability auto command = [&](const std::string &line) { lmp->input->one(line); }; command("fix 1 all nve"); command("compute pe all pe/atom improper"); command("compute sum all reduce sum c_pe"); command("thermo_style custom step temp pe press c_sum"); command("thermo 2"); command("run 4 post no"); } void restart_lammps(LAMMPS *lmp, const TestConfig &cfg) { // utility lambda to improve readability auto command = [&](const std::string &line) { lmp->input->one(line); }; command("clear"); command("read_restart " + cfg.basename + ".restart"); if (!lmp->force->improper) { command("improper_style " + cfg.improper_style); } if ((cfg.improper_style.substr(0, 6) == "hybrid") || !lmp->force->improper->writedata) { for (const auto &improper_coeff : cfg.improper_coeff) { command("improper_coeff " + improper_coeff); } } for (const auto &post_command : cfg.post_commands) { command(post_command); } command("run 0 post no"); } void data_lammps(LAMMPS *lmp, const TestConfig &cfg) { // utility lambdas to improve readability auto command = [&](const std::string &line) { lmp->input->one(line); }; auto parse_input_script = [&](const std::string &filename) { lmp->input->file(filename.c_str()); }; command("clear"); command("variable improper_style delete"); command("variable data_file delete"); command("variable newton_bond delete"); command("variable newton_bond index on"); for (const auto &pre_command : cfg.pre_commands) { command(pre_command); } command("variable improper_style index '" + cfg.improper_style + "'"); command("variable data_file index " + cfg.basename + ".data"); std::string input_file = platform::path_join(INPUT_FOLDER, cfg.input_file); parse_input_script(input_file); for (const auto &improper_coeff : cfg.improper_coeff) { command("improper_coeff " + improper_coeff); } for (const auto &post_command : cfg.post_commands) { command(post_command); } command("run 0 post no"); } // re-generate yaml file with current settings. void generate_yaml_file(const char *outfile, const TestConfig &config) { // initialize system geometry LAMMPS::argv args = {"ImproperStyle", "-log", "none", "-echo", "screen", "-nocite"}; LAMMPS *lmp = nullptr; try { lmp = init_lammps(args, config, true); } catch (std::exception &e) { FAIL() << e.what(); } if (!lmp) { std::cerr << "One or more prerequisite styles are not available " "in this LAMMPS configuration:\n"; for (const auto &prerequisite : config.prerequisites) { std::cerr << prerequisite.first << "_style " << prerequisite.second << "\n"; } return; } const int natoms = lmp->atom->natoms; std::string block; YamlWriter writer(outfile); // write yaml header write_yaml_header(&writer, &test_config, lmp->version); // improper_style writer.emit("improper_style", config.improper_style); // improper_coeff block.clear(); for (const auto &improper_coeff : config.improper_coeff) { block += improper_coeff + "\n"; } writer.emit_block("improper_coeff", block); // extract block.clear(); for (auto data : config.extract) block += fmt::format("{} {}\n", data.first, data.second); writer.emit_block("extract", block); // natoms writer.emit("natoms", natoms); // init_energy writer.emit("init_energy", lmp->force->improper->energy); // init_stress auto *stress = lmp->force->improper->virial; block = fmt::format("{:23.16e} {:23.16e} {:23.16e} {:23.16e} {:23.16e} {:23.16e}", stress[0], stress[1], stress[2], stress[3], stress[4], stress[5]); writer.emit_block("init_stress", block); // init_forces block.clear(); auto *f = lmp->atom->f; for (int i = 1; i <= natoms; ++i) { const int j = lmp->atom->map(i); block += fmt::format("{:3} {:23.16e} {:23.16e} {:23.16e}\n", i, f[j][0], f[j][1], f[j][2]); } writer.emit_block("init_forces", block); // do a few steps of MD run_lammps(lmp); // run_energy writer.emit("run_energy", lmp->force->improper->energy); // run_stress stress = lmp->force->improper->virial; block = fmt::format("{:23.16e} {:23.16e} {:23.16e} {:23.16e} {:23.16e} {:23.16e}", stress[0], stress[1], stress[2], stress[3], stress[4], stress[5]); writer.emit_block("run_stress", block); block.clear(); f = lmp->atom->f; for (int i = 1; i <= natoms; ++i) { const int j = lmp->atom->map(i); block += fmt::format("{:3} {:23.16e} {:23.16e} {:23.16e}\n", i, f[j][0], f[j][1], f[j][2]); } writer.emit_block("run_forces", block); cleanup_lammps(lmp, config); } TEST(ImproperStyle, plain) { if (test_config.skip_tests.count(test_info_->name())) GTEST_SKIP(); LAMMPS::argv args = {"ImproperStyle", "-log", "none", "-echo", "screen", "-nocite"}; ::testing::internal::CaptureStdout(); LAMMPS *lmp = nullptr; try { lmp = init_lammps(args, test_config, true); } catch (std::exception &e) { std::string output = ::testing::internal::GetCapturedStdout(); if (verbose) std::cout << output; FAIL() << e.what(); } std::string output = ::testing::internal::GetCapturedStdout(); if (verbose) std::cout << output; if (!lmp) { std::cerr << "One or more prerequisite styles are not available " "in this LAMMPS configuration:\n"; for (auto &prerequisite : test_config.prerequisites) { std::cerr << prerequisite.first << "_style " << prerequisite.second << "\n"; } GTEST_SKIP(); } EXPECT_THAT(output, StartsWith("LAMMPS (")); EXPECT_THAT(output, HasSubstr("Loop time")); // abort if running in parallel and not all atoms are local const int nlocal = lmp->atom->nlocal; ASSERT_EQ(lmp->atom->natoms, nlocal); double epsilon = test_config.epsilon; ErrorStats stats; auto *improper = lmp->force->improper; EXPECT_FORCES("init_forces (newton on)", lmp->atom, test_config.init_forces, epsilon); EXPECT_STRESS("init_stress (newton on)", improper->virial, test_config.init_stress, epsilon); stats.reset(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.init_energy, epsilon); if (print_stats) std::cerr << "init_energy stats, newton on: " << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); run_lammps(lmp); if (!verbose) ::testing::internal::GetCapturedStdout(); EXPECT_FORCES("run_forces (newton on)", lmp->atom, test_config.run_forces, 10 * epsilon); EXPECT_STRESS("run_stress (newton on)", improper->virial, test_config.run_stress, epsilon); stats.reset(); auto *icompute = lmp->modify->get_compute_by_id("sum"); double energy = 0.0; if (icompute) energy = icompute->compute_scalar(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.run_energy, epsilon); EXPECT_FP_LE_WITH_EPS(improper->energy, energy, epsilon); if (print_stats) std::cerr << "run_energy stats, newton on: " << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); cleanup_lammps(lmp, test_config); try { lmp = init_lammps(args, test_config, false); } catch (std::exception &e) { if (!verbose) ::testing::internal::GetCapturedStdout(); FAIL() << e.what(); } if (!verbose) ::testing::internal::GetCapturedStdout(); // skip over these tests if newton bond is forced to be on if (lmp->force->newton_bond == 0) { improper = lmp->force->improper; EXPECT_FORCES("init_forces (newton off)", lmp->atom, test_config.init_forces, epsilon); EXPECT_STRESS("init_stress (newton off)", improper->virial, test_config.init_stress, 2 * epsilon); stats.reset(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.init_energy, epsilon); if (print_stats) std::cerr << "init_energy stats, newton off:" << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); run_lammps(lmp); if (!verbose) ::testing::internal::GetCapturedStdout(); EXPECT_FORCES("run_forces (newton off)", lmp->atom, test_config.run_forces, 10 * epsilon); EXPECT_STRESS("run_stress (newton off)", improper->virial, test_config.run_stress, epsilon); stats.reset(); icompute = lmp->modify->get_compute_by_id("sum"); if (icompute) energy = icompute->compute_scalar(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.run_energy, epsilon); EXPECT_FP_LE_WITH_EPS(improper->energy, energy, epsilon); if (print_stats) std::cerr << "run_energy stats, newton off:" << stats << std::endl; } if (!verbose) ::testing::internal::CaptureStdout(); restart_lammps(lmp, test_config); if (!verbose) ::testing::internal::GetCapturedStdout(); improper = lmp->force->improper; EXPECT_FORCES("restart_forces", lmp->atom, test_config.init_forces, epsilon); EXPECT_STRESS("restart_stress", improper->virial, test_config.init_stress, epsilon); stats.reset(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.init_energy, epsilon); if (print_stats) std::cerr << "restart_energy stats:" << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); data_lammps(lmp, test_config); if (!verbose) ::testing::internal::GetCapturedStdout(); improper = lmp->force->improper; EXPECT_FORCES("data_forces", lmp->atom, test_config.init_forces, epsilon); EXPECT_STRESS("data_stress", improper->virial, test_config.init_stress, epsilon); stats.reset(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.init_energy, epsilon); if (print_stats) std::cerr << "data_energy stats:" << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); cleanup_lammps(lmp, test_config); if (!verbose) ::testing::internal::GetCapturedStdout(); }; TEST(ImproperStyle, omp) { if (!Info::has_package("OPENMP")) GTEST_SKIP(); if (test_config.skip_tests.count(test_info_->name())) GTEST_SKIP(); LAMMPS::argv args = {"ImproperStyle", "-log", "none", "-echo", "screen", "-nocite", "-pk", "omp", "4", "-sf", "omp"}; ::testing::internal::CaptureStdout(); LAMMPS *lmp = nullptr; try { lmp = init_lammps(args, test_config, true); } catch (std::exception &e) { std::string output = ::testing::internal::GetCapturedStdout(); if (verbose) std::cout << output; FAIL() << e.what(); } std::string output = ::testing::internal::GetCapturedStdout(); if (verbose) std::cout << output; if (!lmp) { std::cerr << "One or more prerequisite styles with /omp suffix\n" "are not available in this LAMMPS configuration:\n"; for (auto &prerequisite : test_config.prerequisites) { std::cerr << prerequisite.first << "_style " << prerequisite.second << "\n"; } GTEST_SKIP(); } EXPECT_THAT(output, StartsWith("LAMMPS (")); EXPECT_THAT(output, HasSubstr("Loop time")); // abort if running in parallel and not all atoms are local const int nlocal = lmp->atom->nlocal; ASSERT_EQ(lmp->atom->natoms, nlocal); // relax error a bit for OPENMP package double epsilon = 5.0 * test_config.epsilon; ErrorStats stats; auto *improper = lmp->force->improper; EXPECT_FORCES("init_forces (newton on)", lmp->atom, test_config.init_forces, epsilon); EXPECT_STRESS("init_stress (newton on)", improper->virial, test_config.init_stress, 10 * epsilon); stats.reset(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.init_energy, epsilon); if (print_stats) std::cerr << "init_energy stats, newton on: " << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); run_lammps(lmp); if (!verbose) ::testing::internal::GetCapturedStdout(); EXPECT_FORCES("run_forces (newton on)", lmp->atom, test_config.run_forces, 10 * epsilon); EXPECT_STRESS("run_stress (newton on)", improper->virial, test_config.run_stress, 10 * epsilon); stats.reset(); auto *icompute = lmp->modify->get_compute_by_id("sum"); double energy = 0.0; if (icompute) energy = icompute->compute_scalar(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.run_energy, epsilon); // TODO: this is currently broken for OPENMP with improper style hybrid // needs to be fixed in the main code somewhere. Not sure where, though. if (test_config.improper_style.substr(0, 6) != "hybrid") EXPECT_FP_LE_WITH_EPS(improper->energy, energy, epsilon); if (print_stats) std::cerr << "run_energy stats, newton on: " << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); cleanup_lammps(lmp, test_config); try { lmp = init_lammps(args, test_config, false); } catch (std::exception &e) { if (!verbose) ::testing::internal::GetCapturedStdout(); FAIL() << e.what(); } if (!verbose) ::testing::internal::GetCapturedStdout(); // skip over these tests if newton bond is forced to be on if (lmp->force->newton_bond == 0) { improper = lmp->force->improper; EXPECT_FORCES("init_forces (newton off)", lmp->atom, test_config.init_forces, epsilon); EXPECT_STRESS("init_stress (newton off)", improper->virial, test_config.init_stress, 10 * epsilon); stats.reset(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.init_energy, epsilon); if (print_stats) std::cerr << "init_energy stats, newton off:" << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); run_lammps(lmp); if (!verbose) ::testing::internal::GetCapturedStdout(); EXPECT_FORCES("run_forces (newton off)", lmp->atom, test_config.run_forces, 10 * epsilon); EXPECT_STRESS("run_stress (newton off)", improper->virial, test_config.run_stress, 10 * epsilon); stats.reset(); icompute = lmp->modify->get_compute_by_id("sum"); if (icompute) energy = icompute->compute_scalar(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.run_energy, epsilon); // TODO: this is currently broken for OPENMP with improper style hybrid // needs to be fixed in the main code somewhere. Not sure where, though. if (test_config.improper_style.substr(0, 6) != "hybrid") EXPECT_FP_LE_WITH_EPS(improper->energy, energy, epsilon); if (print_stats) std::cerr << "run_energy stats, newton off:" << stats << std::endl; } if (!verbose) ::testing::internal::CaptureStdout(); cleanup_lammps(lmp, test_config); if (!verbose) ::testing::internal::GetCapturedStdout(); }; TEST(ImproperStyle, kokkos_omp) { if (!Info::has_package("KOKKOS")) GTEST_SKIP(); if (test_config.skip_tests.count(test_info_->name())) GTEST_SKIP(); // test either OpenMP or Serial if (!Info::has_accelerator_feature("KOKKOS", "api", "serial") && !Info::has_accelerator_feature("KOKKOS", "api", "openmp")) GTEST_SKIP(); // if KOKKOS has GPU support enabled, it *must* be used. We cannot test OpenMP only. if (Info::has_accelerator_feature("KOKKOS", "api", "cuda") || Info::has_accelerator_feature("KOKKOS", "api", "hip") || Info::has_accelerator_feature("KOKKOS", "api", "sycl")) GTEST_SKIP() << "Cannot test KOKKOS/OpenMP with GPU support enabled"; LAMMPS::argv args = {"ImproperStyle", "-log", "none", "-echo", "screen", "-nocite", "-k", "on", "t", "4", "-sf", "kk"}; // fall back to serial if openmp is not available if (!Info::has_accelerator_feature("KOKKOS", "api", "openmp")) args[9] = "1"; ::testing::internal::CaptureStdout(); LAMMPS *lmp = nullptr; try { lmp = init_lammps(args, test_config, true); } catch (std::exception &e) { std::string output = ::testing::internal::GetCapturedStdout(); if (verbose) std::cout << output; FAIL() << e.what(); } std::string output = ::testing::internal::GetCapturedStdout(); if (verbose) std::cout << output; if (!lmp) { std::cerr << "One or more prerequisite styles with /kk suffix\n" "are not available in this LAMMPS configuration:\n"; for (auto &prerequisite : test_config.prerequisites) { std::cerr << prerequisite.first << "_style " << prerequisite.second << "\n"; } GTEST_SKIP(); } EXPECT_THAT(output, StartsWith("LAMMPS (")); EXPECT_THAT(output, HasSubstr("Loop time")); // abort if running in parallel and not all atoms are local const int nlocal = lmp->atom->nlocal; ASSERT_EQ(lmp->atom->natoms, nlocal); // relax error a bit for KOKKOS package double epsilon = 5.0 * test_config.epsilon; ErrorStats stats; auto improper = lmp->force->improper; EXPECT_FORCES("init_forces (newton on)", lmp->atom, test_config.init_forces, epsilon); EXPECT_STRESS("init_stress (newton on)", improper->virial, test_config.init_stress, 10 * epsilon); stats.reset(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.init_energy, epsilon); if (print_stats) std::cerr << "init_energy stats, newton on: " << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); run_lammps(lmp); if (!verbose) ::testing::internal::GetCapturedStdout(); EXPECT_FORCES("run_forces (newton on)", lmp->atom, test_config.run_forces, 10 * epsilon); EXPECT_STRESS("run_stress (newton on)", improper->virial, test_config.run_stress, 10 * epsilon); stats.reset(); auto *icompute = lmp->modify->get_compute_by_id("sum"); if (icompute) icompute->compute_scalar(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.run_energy, epsilon); // FIXME: this is currently broken ??? for KOKKOS with improper style hybrid // needs to be fixed in the main code somewhere. Not sure where, though. // if (test_config.improper_style.substr(0, 6) != "hybrid") // EXPECT_FP_LE_WITH_EPS(improper->energy, energy, epsilon); if (print_stats) std::cerr << "run_energy stats, newton on: " << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); cleanup_lammps(lmp, test_config); try { lmp = init_lammps(args, test_config, false); } catch (std::exception &e) { if (!verbose) ::testing::internal::GetCapturedStdout(); FAIL() << e.what(); } if (!verbose) ::testing::internal::GetCapturedStdout(); // skip over these tests if newton bond is forced to be on if (lmp->force->newton_bond == 0) { improper = lmp->force->improper; EXPECT_FORCES("init_forces (newton off)", lmp->atom, test_config.init_forces, epsilon); EXPECT_STRESS("init_stress (newton off)", improper->virial, test_config.init_stress, 10 * epsilon); stats.reset(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.init_energy, epsilon); if (print_stats) std::cerr << "init_energy stats, newton off:" << stats << std::endl; if (!verbose) ::testing::internal::CaptureStdout(); run_lammps(lmp); if (!verbose) ::testing::internal::GetCapturedStdout(); EXPECT_FORCES("run_forces (newton off)", lmp->atom, test_config.run_forces, 10 * epsilon); EXPECT_STRESS("run_stress (newton off)", improper->virial, test_config.run_stress, 10 * epsilon); stats.reset(); icompute = lmp->modify->get_compute_by_id("sum"); if (icompute) icompute->compute_scalar(); EXPECT_FP_LE_WITH_EPS(improper->energy, test_config.run_energy, epsilon); // FIXME: this is currently broken ??? for KOKKOS with improper style hybrid // needs to be fixed in the main code somewhere. Not sure where, though. // if (test_config.improper_style.substr(0, 6) != "hybrid") // EXPECT_FP_LE_WITH_EPS(improper->energy, energy, epsilon); if (print_stats) std::cerr << "run_energy stats, newton off:" << stats << std::endl; } if (!verbose) ::testing::internal::CaptureStdout(); cleanup_lammps(lmp, test_config); if (!verbose) ::testing::internal::GetCapturedStdout(); }; TEST(ImproperStyle, numdiff) { if (!Info::has_package("EXTRA-FIX")) GTEST_SKIP(); if (test_config.skip_tests.count(test_info_->name())) GTEST_SKIP(); LAMMPS::argv args = {"ImproperStyle", "-log", "none", "-echo", "screen", "-nocite"}; ::testing::internal::CaptureStdout(); LAMMPS *lmp = nullptr; try { lmp = init_lammps(args, test_config, true); } catch (std::exception &e) { std::string output = ::testing::internal::GetCapturedStdout(); if (verbose) std::cout << output; FAIL() << e.what(); } std::string output = ::testing::internal::GetCapturedStdout(); if (verbose) std::cout << output; if (!lmp) { std::cerr << "One or more prerequisite styles are not available " "in this LAMMPS configuration:\n"; for (auto &prerequisite : test_config.prerequisites) { std::cerr << prerequisite.first << "_style " << prerequisite.second << "\n"; } GTEST_SKIP(); } EXPECT_THAT(output, StartsWith("LAMMPS (")); EXPECT_THAT(output, HasSubstr("Loop time")); // abort if running in parallel and not all atoms are local const int nlocal = lmp->atom->nlocal; ASSERT_EQ(lmp->atom->natoms, nlocal); if (!verbose) ::testing::internal::CaptureStdout(); lmp->input->one("fix diff all numdiff 2 6.05504e-6"); lmp->input->one("run 2 post no"); if (!verbose) ::testing::internal::GetCapturedStdout(); Fix *ifix = lmp->modify->get_fix_by_id("diff"); if (ifix) { double epsilon = test_config.epsilon * 5.0e8; ErrorStats stats; double **f1 = lmp->atom->f; double **f2 = ifix->array_atom; SCOPED_TRACE("EXPECT FORCES: numdiff"); for (int i = 0; i < nlocal; ++i) { EXPECT_FP_LE_WITH_EPS(f1[i][0], f2[i][0], epsilon); EXPECT_FP_LE_WITH_EPS(f1[i][1], f2[i][1], epsilon); EXPECT_FP_LE_WITH_EPS(f1[i][2], f2[i][2], epsilon); } if (print_stats) std::cerr << "numdiff stats: " << stats << " epsilon: " << epsilon << std::endl; } if (!verbose) ::testing::internal::CaptureStdout(); cleanup_lammps(lmp, test_config); if (!verbose) ::testing::internal::GetCapturedStdout(); } TEST(ImproperStyle, extract) { if (test_config.skip_tests.count(test_info_->name())) GTEST_SKIP(); LAMMPS::argv args = {"ImproperStyle", "-log", "none", "-echo", "screen", "-nocite"}; if (!verbose) ::testing::internal::CaptureStdout(); LAMMPS *lmp = nullptr; try { lmp = init_lammps(args, test_config, true); } catch (std::exception &e) { if (!verbose) ::testing::internal::GetCapturedStdout(); FAIL() << e.what(); } if (!verbose) ::testing::internal::GetCapturedStdout(); if (!lmp) { std::cerr << "One or more prerequisite styles are not available " "in this LAMMPS configuration:\n"; for (auto prerequisite : test_config.prerequisites) { std::cerr << prerequisite.first << "_style " << prerequisite.second << "\n"; } GTEST_SKIP(); } auto *improper = lmp->force->improper; void *ptr = nullptr; int dim = 0; for (auto extract : test_config.extract) { ptr = improper->extract(extract.first.c_str(), dim); EXPECT_NE(ptr, nullptr); EXPECT_EQ(dim, extract.second); } ptr = improper->extract("does_not_exist", dim); EXPECT_EQ(ptr, nullptr); if (!verbose) ::testing::internal::CaptureStdout(); cleanup_lammps(lmp, test_config); if (!verbose) ::testing::internal::GetCapturedStdout(); }