release on 2014-07-25_13-42-41

tutorials/cfdemSolverPiso/settlingTestMPI/DEM/in.liggghts_run

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+# Pour granular particles into chute container, then induce flow
+echo both
+log             ../DEM/log.liggghts
+thermo_log      ../DEM/post/thermo.txt
+
+atom_style      granular
+atom_modify     map array sort 0 0
+communicate     single vel yes
+
+boundary        f f f
+newton          off
+
+units           si
+
+region          reg block 0 0.1 0 0.1 0 0.1 units box
+create_box      1 reg
+
+neighbor        0.003 bin
+neigh_modify    delay 0 binsize 0.01
+
+
+# Material properties required for granular pair styles
+fix         m1 all property/global youngsModulus peratomtype 5.e6
+fix         m2 all property/global poissonsRatio peratomtype 0.45
+fix         m3 all property/global coefficientRestitution peratomtypepair 1 0.3
+fix         m4 all property/global coefficientFriction peratomtypepair 1 0.5
+#fix         m5 all property/global characteristicVelocity scalar 2.0
+
+# pair style
+pair_style  gran model hertz tangential history # hertz without cohesion
+pair_coeff  * *
+
+# timestep, gravity
+timestep    0.00001
+fix         gravi all gravity 9.81 vector 0.0 -1.0 0.0
+
+# walls
+fix     xwalls1 all wall/gran model hertz tangential history primitive type 1 xplane 0.0
+fix     xwalls2 all wall/gran model hertz tangential history primitive type 1 xplane 0.1
+fix     ywalls1 all wall/gran model hertz tangential history primitive type 1 yplane 0.0
+fix     ywalls2 all wall/gran model hertz tangential history primitive type 1 yplane 0.1
+fix     zwalls1 all wall/gran model hertz tangential history primitive type 1 zplane 0.0
+fix     zwalls2 all wall/gran model hertz tangential history primitive type 1 zplane 0.01
+
+# create single partciles
+create_atoms    1 single 0.05 0.025  0.05 units box
+set             group all diameter 0.0001 density 3000
+
+# cfd coupling
+fix     cfd all couple/cfd couple_every 100 mpi
+fix     cfd2 all couple/cfd/force
+
+variable    vx equal vx[1]
+variable    vy equal vy[1]
+variable    vz equal vz[1]
+variable    time equal step*dt
+fix         extra all print 100 "${time} ${vx} ${vy} ${vz}" file ../DEM/post/velocity.txt title "#" screen no
+
+# apply nve integration to all particles that are inserted as single particles
+fix         integr all nve/sphere
+
+# screen output
+compute         rke all erotate/sphere
+thermo_style    custom step atoms ke c_rke vol
+thermo          1000
+thermo_modify   lost ignore norm no
+compute_modify  thermo_temp dynamic yes
+
+# insert the first particles so that dump is not empty
+run     1
+dump    dmp all custom 1000 ../DEM/post/dump.liggghts_run id type x y z ix iy iz vx vy vz fx fy fz omegax omegay omegaz radius
+
+run     1 upto