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clean up whitespaces [ci skip]
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@ -51,8 +51,8 @@ fix cfd2 all couple/cfd/force
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fix cfd3 all couple/cfd/chemistry n_species 5 species_names H2 H2O CO CO2 N2 n_diff 2 diffusant_names CO H2
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# Activate for 3-layer unreacted core shrink model
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fix cfd5 all chem/shrink/core speciesA CO molMassA 0.02801 speciesC CO2 molMassC 0.04401 kch2 0.375161 screen no nevery 1
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fix cfd6 all chem/shrink/core speciesA H2 molMassA 0.00202 speciesC H2O molMassC 0.01801 kch2 0.0044738 screen no nevery 1
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fix cfd5 all chem/shrink/core speciesA CO molMassA 0.02801 speciesC CO2 molMassC 0.04401 kch2 0.375161 screen no nevery 1
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fix cfd6 all chem/shrink/core speciesA H2 molMassA 0.00202 speciesC H2O molMassC 0.01801 kch2 0.0044738 screen no nevery 1
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#0.34
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#0.06
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@ -61,12 +61,12 @@ fix cfd6 all chem/shrink/core speciesA H2 molMassA 0.00202 speciesC H2O molM
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fix k0_CO all property/global k0_cfd5 vector 17 25 2700
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fix Ea_CO all property/global Ea_cfd5 vector 69488 73674 113859
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fix k0_H2 all property/global k0_cfd6 vector 30 23 160
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fix Ea_H2 all property/global Ea_cfd6 vector 63627 71162 92092
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fix k0_H2 all property/global k0_cfd6 vector 30 23 160
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fix Ea_H2 all property/global Ea_cfd6 vector 63627 71162 92092
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# particle porosity/tortuosity/pore diameter
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fix porosity all property/atom porosity_ vector yes no no 0.598 0.2122 0.0399 0.02
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fix tortuosity all property/global tortuosity_ scalar 3
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fix porosity all property/atom porosity_ vector yes no no 0.598 0.2122 0.0399 0.02
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fix tortuosity all property/global tortuosity_ scalar 3
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fix pore_diameter all property/global pore_diameter_ scalar 1e-6
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# Material properties for unreacted chemical shrink core (activate only when chem/shrink/core is active)
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@ -77,17 +77,17 @@ fix molMass all property/global molMass_all vector 0.055845 0.071844 0.23153
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fix layerRelRad all property/atom relRadii vector yes no no 1.0 0.998 0.995 0.98
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# define fix for mass layer - initial testing
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fix massLayer all property/atom massLayer vector no no no 0. 0. 0. 0.
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fix massLayer all property/atom massLayer vector no no no 0. 0. 0. 0.
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## debug fixes ##
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# fix to compute fracRed
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fix fracRed all property/atom fracRed_all vector yes no no 0. 0. 0.
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fix rhoeff all property/atom rhoeff vector yes no no 0. 0. 0. 0.
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fix Aterm all property/atom Aterm vector yes no no 0. 0. 0.
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fix Bterm all property/atom Bterm vector yes no no 0. 0. 0.
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fix Massterm all property/atom Massterm scalar yes no no 0.
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fix effDiffBinary all property/atom effDiffBinary vector yes no no 0. 0. 0.
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fix effDiffKnud all property/atom effDiffKnud vector yes no no 0. 0. 0.
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fix Aterm all property/atom Aterm vector yes no no 0. 0. 0.
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fix Bterm all property/atom Bterm vector yes no no 0. 0. 0.
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fix Massterm all property/atom Massterm scalar yes no no 0.
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fix effDiffBinary all property/atom effDiffBinary vector yes no no 0. 0. 0.
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fix effDiffKnud all property/atom effDiffKnud vector yes no no 0. 0. 0.
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# apply nve integration to all particles that are inserted as single particles
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# fix integr all nve/sphere
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@ -114,48 +114,48 @@ fix redRad4 all ave/time 1000 1 1000 c_layerRad4 file relRad4.dat
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#### give information to file
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compute Aterm_red all reduce sum f_Aterm[1] f_Aterm[2] f_Aterm[3]
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fix Aterm1 all ave/time 100 1 100 c_Aterm_red[1] c_Aterm_red[2] c_Aterm_red[3]
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fix Aterm1 all ave/time 100 1 100 c_Aterm_red[1] c_Aterm_red[2] c_Aterm_red[3]
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variable a1 equal f_Aterm1[1]
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variable a2 equal f_Aterm1[2]
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variable a3 equal f_Aterm1[3]
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compute Bterm_red all reduce sum f_Bterm[1] f_Bterm[2] f_Bterm[3]
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fix Bterm1 all ave/time 100 1 100 c_Bterm_red[1] c_Bterm_red[2] c_Bterm_red[3]
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fix Bterm1 all ave/time 100 1 100 c_Bterm_red[1] c_Bterm_red[2] c_Bterm_red[3]
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variable b1 equal f_Bterm1[1]
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variable b2 equal f_Bterm1[2]
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variable b3 equal f_Bterm1[3]
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compute Massterm_red all reduce sum f_Massterm
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fix Massterm1 all ave/time 100 1 100 c_Massterm_red
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fix Massterm1 all ave/time 100 1 100 c_Massterm_red
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variable mt1 equal f_Massterm1
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compute fracRedTerm all reduce sum f_fracRed[1] f_fracRed[2] f_fracRed[3]
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fix fracRed1 all ave/time 100 1 100 c_fracRedTerm[1] c_fracRedTerm[2] c_fracRedTerm[3]
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fix fracRed1 all ave/time 100 1 100 c_fracRedTerm[1] c_fracRedTerm[2] c_fracRedTerm[3]
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variable fr1 equal f_fracRed1[1]
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variable fr2 equal f_fracRed1[2]
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variable fr3 equal f_fracRed1[3]
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compute effDiffBinary_red all reduce sum f_effDiffBinary[1] f_effDiffBinary[2] f_effDiffBinary[3]
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fix effDiffBinary1 all ave/time 1000 1 1000 c_effDiffBinary_red[1] c_effDiffBinary_red[2] c_effDiffBinary_red[3]
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fix effDiffBinary1 all ave/time 1000 1 1000 c_effDiffBinary_red[1] c_effDiffBinary_red[2] c_effDiffBinary_red[3]
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variable dij1 equal f_effDiffBinary1[1]
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variable dij2 equal f_effDiffBinary1[2]
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variable dij3 equal f_effDiffBinary1[3]
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compute effDiffKnud_red all reduce sum f_effDiffKnud[1] f_effDiffKnud[2] f_effDiffKnud[3]
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fix effDiffKnud1 all ave/time 1000 1 1000 c_effDiffKnud_red[1] c_effDiffKnud_red[2] c_effDiffKnud_red[3]
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fix effDiffKnud1 all ave/time 1000 1 1000 c_effDiffKnud_red[1] c_effDiffKnud_red[2] c_effDiffKnud_red[3]
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variable dik1 equal f_effDiffKnud1[1]
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variable dik2 equal f_effDiffKnud1[2]
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variable dik3 equal f_effDiffKnud1[3]
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compute porosity_red all reduce sum f_porosity[1] f_porosity[2] f_porosity[3] f_porosity[4]
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fix porosity1 all ave/time 1000 1 1000 c_porosity_red[1] c_porosity_red[2] c_porosity_red[3] c_porosity_red[4]
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fix porosity1 all ave/time 1000 1 1000 c_porosity_red[1] c_porosity_red[2] c_porosity_red[3] c_porosity_red[4]
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variable p1 equal f_porosity1[1]
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variable p2 equal f_porosity1[2]
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variable p3 equal f_porosity1[3]
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variable p4 equal f_porosity1[4]
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compute mass_layer all reduce sum f_massLayer[1] f_massLayer[2] f_massLayer[3] f_massLayer[4]
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fix massLayerPrintout all ave/time 100 1 100 c_mass_layer[1] c_mass_layer[2] c_mass_layer[3] c_mass_layer[4]
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fix massLayerPrintout all ave/time 100 1 100 c_mass_layer[1] c_mass_layer[2] c_mass_layer[3] c_mass_layer[4]
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variable mL1 equal f_massLayerPrintout[1]
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variable mL2 equal f_massLayerPrintout[2]
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variable mL3 equal f_massLayerPrintout[3]
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