update example dump files to contain atom property names

examples/files/dump.kinase

@@ -6,7 +6,7 @@ ITEM: BOX BOUNDS
 -6.2035 6.2035
 -6.2035 6.2035
 -6.2035 6.2035
-ITEM: ATOMS
+ITEM: ATOMS id type x y z
 1965739326 1 -2.73852 3.76042 0.0137829
 1638062651 1 -4.08446 0.411239 0.994664
 574343881 1 -2.25466 -3.0259 -0.036883

examples/files/dump.micelle

@@ -6,7 +6,7 @@ ITEM: BOX BOUNDS
 0 35.8569
 0 35.8569
 -0.1 0.1
-ITEM: ATOMS
+ITEM: ATOMS id type xs ys zs
 1 2 0.972698 0.992397 0.5
 2 1 0.0517232 0.999069 0.5
 3 1 0.0504894 0.0385782 0.5

examples/files/dump.peptide

@@ -6,7 +6,7 @@
    36.8401937129895        64.2115601793071     
    41.0136911525442        68.3850576188589     
    29.7680952261698        57.1394616924871     
- ITEM: ATOMS
+ ITEM: ATOMS id type xs ys zs ix iy iz
     31  3  0.22450  0.39503  0.37295    0    0    0
    306 14  0.29326  0.17604  0.15395    0    0    0
     16  8  0.31495  0.27307  0.07008    0    0    0

examples/files/dump.peptide.1

@@ -6,7 +6,7 @@ ITEM: BOX BOUNDS
 0 27.9398
 0 27.9398
 0 27.9398
-ITEM: ATOMS
+ITEM: ATOMS id type xs ys zs ix iy iz
 1 1 0.410912 0.570945 0.36491 0 0 0
 2 2 0.376227 0.6013 0.339084 0 0 0
 3 3 0.397383 0.536983 0.387988 0 0 0

examples/files/dump.peptide.2

@@ -6,7 +6,7 @@ ITEM: BOX BOUNDS
 0.482127 27.3191
 0.477796 27.3148
 0.47406 27.3111
-ITEM: ATOMS
+ITEM: ATOMS id type xs ys zs ix iy iz
 1 1 0.404224 0.524373 0.362448 0 0 0
 2 2 0.364265 0.561026 0.358768 0 0 0
 3 3 0.394989 0.481736 0.350359 0 0 0