scripts: Replaced 'cp -r' with the POSIX compliant 'cp -R'

applications/utilities/parallelProcessing/redistributePar/redistributePar.C

@@ -39,7 +39,7 @@ Description
         mkdir processorN
 
         # Copy undecomposed polyMesh
-        cp -r constant processor0
+        cp -R constant processor0
 
         # Distribute
         mpirun -np ddd redistributePar -parallel

bin/foamCloneCase

@@ -3,7 +3,7 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     | Website:  https://openfoam.org
-#   \\  /    A nd           | Copyright (C) 2015-2020 OpenFOAM Foundation
+#   \\  /    A nd           | Copyright (C) 2015-2021 OpenFOAM Foundation
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
@@ -63,7 +63,7 @@ error() {
 }
 
 cpIfPresent() {
-    [ -e "$1" ] && echo "$1 to ... ${1##*/}" && cp -r "$1" "$2"
+    [ -e "$1" ] && echo "$1 to ... ${1##*/}" && cp -R "$1" "$2"
 }
 
 isCaseValid() {

bin/foamNewBC

@@ -3,7 +3,7 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     | Website:  https://openfoam.org
-#   \\  /    A nd           | Copyright (C) 2015-2018 OpenFOAM Foundation
+#   \\  /    A nd           | Copyright (C) 2015-2021 OpenFOAM Foundation
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
@@ -220,7 +220,7 @@ do
     esac
 done
 
-echo "Creating Make subdirectory" && cp -r "${dir}/Make" "${name}"
+echo "Creating Make subdirectory" && cp -R "${dir}/Make" "${name}"
 
 # Get ...Fields.C for template class, otherwise ...Field.C
 compiled=$(find "${name}" -name "*.C" -exec basename {} \; | sort | tail -1)

bin/tools/RunFunctions

@@ -2,7 +2,7 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     | Website:  https://openfoam.org
-#   \\  /    A nd           | Copyright (C) 2011-2019 OpenFOAM Foundation
+#   \\  /    A nd           | Copyright (C) 2011-2021 OpenFOAM Foundation
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
@@ -170,7 +170,7 @@ cloneCase()
         mkdir -p $to
         for f in 0 system constant
         do
-            cp -r $from/$f $to
+            cp -R $from/$f $to
         done
         return 0
     fi

test/IO/fileHandler/Allrun

@@ -22,15 +22,15 @@ runParallel -s uncollated $application -fileHandler uncollated
 rm -rf machineA/fileHandler
 mkdir -p machineA/fileHandler
 (   cd machineA/fileHandler && \
-    cp -r ../../processor[0-1] . && \
+    cp -R ../../processor[0-1] . && \
-    cp -r ../../system . && \
+    cp -R ../../system . && \
     mkdir -p constant && find ../../constant -type f -exec cp {} constant/ \;
 )
 #- Note: slave node does not need constant&system since these are global
 rm -rf machineB/fileHandler
 mkdir -p machineB/fileHandler
 (   cd machineB/fileHandler && \
-    cp -r ../../processor[2-3] .
+    cp -R ../../processor[2-3] .
 )
 #- Run with different roots
 (   d=$PWD && \
@@ -77,8 +77,8 @@ runApplication -s collated decomposePar \
 rm -rf machineA/fileHandler
 mkdir -p machineA/fileHandler
 (   cd machineA/fileHandler && \
-    cp -r ../../processor* . && \
+    cp -R ../../processor* . && \
-    cp -r ../../system . && \
+    cp -R ../../system . && \
     mkdir -p constant && find ../../constant -type f -exec cp {} constant/ \;
 )
 #- Note: slave node does not need constant&system since these are global

tutorials/combustion/buoyantReactingFoam/Lagrangian/hotBoxes/Allrun-parallel

@@ -6,7 +6,7 @@ cd ${0%/*} || exit 1    # Run from this directory
 
 ./Allmesh
 
-cp -rf 0.orig 0
+cp -Rf 0.orig 0
 
 application=$(getApplication)
 

tutorials/heatTransfer/buoyantSimpleFoam/circuitBoardCooling/Allrun

@@ -6,7 +6,7 @@ application=$(getApplication)
 
 runApplication blockMesh
 
-cp -r 0.orig 0
+cp -R 0.orig 0
 
 # Create 1D and 3D baffles
 runApplication createBaffles -overwrite

tutorials/incompressible/icoFoam/cavity/Allrun

@@ -21,7 +21,7 @@ runMapFieldsConsistent()
 copySolutionDirs()
 {
     echo "Copying $2/0* directory to $1"
-    cp -r $2/0* $1
+    cp -R $2/0* $1
 }
 
 setCavityFine()
@@ -77,7 +77,7 @@ do
         runMapFieldsConsistent $previousCase $caseName
         ;;
     cavityClipped)
-        cp -r $caseName/0 $caseName/0.5
+        cp -R $caseName/0 $caseName/0.5
         runMapFields cavity $caseName
         ;;
     esac

tutorials/incompressible/pimpleFoam/RAS/TJunctionFan/Allrun

@@ -11,7 +11,7 @@ runApplication blockMesh
 # Create faceZones for baffles and fan
 runApplication topoSet
 
-cp -r 0.orig 0
+cp -R 0.orig 0
 
 # Create wall and cyclic baffles and the fields on them
 runApplication createBaffles -overwrite

tutorials/incompressible/pimpleFoam/RAS/wingMotion/Allrun

@@ -18,7 +18,7 @@ runApplication simpleFoam
 # Copy the mesh from the steady state case and map the results to a
 # mesh motion case, then solve transient.
 cd ../wingMotion2D_pimpleFoam
-cp -r ../wingMotion2D_simpleFoam/constant/polyMesh constant
+cp -R ../wingMotion2D_simpleFoam/constant/polyMesh constant
 runApplication mapFields ../wingMotion2D_simpleFoam -sourceTime latestTime -consistent
 cp pointDisplacement 0/pointDisplacement
 runApplication decomposePar

tutorials/incompressible/pisoFoam/LES/motorBike/Allrun

@@ -16,7 +16,7 @@ cloneParallelCase()
         cpfiles="processor* system constant"
         for f in $cpfiles
         do
-            cp -r $1/$f $2
+            cp -R $1/$f $2
         done
     fi
 }

tutorials/lagrangian/particleFoam/hopper/Allrun

@@ -13,7 +13,7 @@ cd ..
 
 cd hopperEmptying
 rm -rf 0
-cp -r 0.orig 0
+cp -R 0.orig 0
 runApplication blockMesh
 runApplication mapFields ../hopperInitialState -sourceTime latestTime
 runApplication decomposePar

tutorials/multiphase/potentialFreeSurfaceFoam/movingOscillatingBox/Allrun

@@ -18,7 +18,7 @@ runApplication -s selectBottom \
 
 runApplication createPatch -overwrite
 
-cp -r 0.orig 0 > /dev/null 2>&1
+cp -R 0.orig 0 > /dev/null 2>&1
 
 runApplication $application