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subsetMesh: Added -noFields option

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With the -noFields option the mesh is subset but the fields are not changed.
This is useful when the field fields have been created to correspond to the mesh
after the mesh subset.
This commit is contained in:
Henry Weller
2018-07-31 18:14:47 +01:00
parent 8662f99ac1
commit d57d36b30e
6 changed files with 324 additions and 291 deletions
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594
applications/utilities/mesh/manipulation/subsetMesh/subsetMesh.C
View File

@ -208,6 +208,12 @@ int main(int argc, char *argv[])
"time",
"specify a time for the resulting mesh"
);
argList::addBoolOption
(
"noFields",
"do not update fields"
);
#include "setRootCase.H"
#include "createTime.H"
runTime.functionObjects().off();
@ -234,6 +240,7 @@ int main(int argc, char *argv[])
// Set both mesh and field to this time
meshInstance = fieldsInstance;
}
const bool fields = !args.optionFound("noFields");
Info<< "Reading cell set from " << setName << endl << endl;
@ -268,296 +275,325 @@ int main(int argc, char *argv[])
cellSet currentSet(mesh, setName);
subsetter.setLargeCellSubset(currentSet, patchi, true);
IOobjectList objects(mesh, runTime.timeName());
// Read vol fields and subset
// ~~~~~~~~~~~~~~~~~~~~~~~~~~
wordList scalarNames(objects.names(volScalarField::typeName));
PtrList<volScalarField> scalarFlds(scalarNames.size());
subsetVolFields(subsetter, scalarNames, scalarFlds);
wordList vectorNames(objects.names(volVectorField::typeName));
PtrList<volVectorField> vectorFlds(vectorNames.size());
subsetVolFields(subsetter, vectorNames, vectorFlds);
wordList sphericalTensorNames
(
objects.names(volSphericalTensorField::typeName)
);
PtrList<volSphericalTensorField> sphericalTensorFlds
(
sphericalTensorNames.size()
);
subsetVolFields(subsetter, sphericalTensorNames, sphericalTensorFlds);
wordList symmTensorNames(objects.names(volSymmTensorField::typeName));
PtrList<volSymmTensorField> symmTensorFlds(symmTensorNames.size());
subsetVolFields(subsetter, symmTensorNames, symmTensorFlds);
wordList tensorNames(objects.names(volTensorField::typeName));
PtrList<volTensorField> tensorFlds(tensorNames.size());
subsetVolFields(subsetter, tensorNames, tensorFlds);
// Read surface fields and subset
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
wordList surfScalarNames(objects.names(surfaceScalarField::typeName));
PtrList<surfaceScalarField> surfScalarFlds(surfScalarNames.size());
subsetSurfaceFields(subsetter, surfScalarNames, surfScalarFlds);
wordList surfVectorNames(objects.names(surfaceVectorField::typeName));
PtrList<surfaceVectorField> surfVectorFlds(surfVectorNames.size());
subsetSurfaceFields(subsetter, surfVectorNames, surfVectorFlds);
wordList surfSphericalTensorNames
(
objects.names(surfaceSphericalTensorField::typeName)
);
PtrList<surfaceSphericalTensorField> surfSphericalTensorFlds
(
surfSphericalTensorNames.size()
);
subsetSurfaceFields
(
subsetter,
surfSphericalTensorNames,
surfSphericalTensorFlds
);
wordList surfSymmTensorNames
(
objects.names(surfaceSymmTensorField::typeName)
);
PtrList<surfaceSymmTensorField> surfSymmTensorFlds
(
surfSymmTensorNames.size()
);
subsetSurfaceFields(subsetter, surfSymmTensorNames, surfSymmTensorFlds);
wordList surfTensorNames(objects.names(surfaceTensorField::typeName));
PtrList<surfaceTensorField> surfTensorFlds(surfTensorNames.size());
subsetSurfaceFields(subsetter, surfTensorNames, surfTensorFlds);
// Read point fields and subset
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
const pointMesh& pMesh = pointMesh::New(mesh);
wordList pointScalarNames(objects.names(pointScalarField::typeName));
PtrList<pointScalarField> pointScalarFlds(pointScalarNames.size());
subsetPointFields(subsetter, pMesh, pointScalarNames, pointScalarFlds);
wordList pointVectorNames(objects.names(pointVectorField::typeName));
PtrList<pointVectorField> pointVectorFlds(pointVectorNames.size());
subsetPointFields(subsetter, pMesh, pointVectorNames, pointVectorFlds);
wordList pointSphericalTensorNames
(
objects.names(pointSphericalTensorField::typeName)
);
PtrList<pointSphericalTensorField> pointSphericalTensorFlds
(
pointSphericalTensorNames.size()
);
subsetPointFields
(
subsetter,
pMesh,
pointSphericalTensorNames,
pointSphericalTensorFlds
);
wordList pointSymmTensorNames
(
objects.names(pointSymmTensorField::typeName)
);
PtrList<pointSymmTensorField> pointSymmTensorFlds
(
pointSymmTensorNames.size()
);
subsetPointFields
(
subsetter,
pMesh,
pointSymmTensorNames,
pointSymmTensorFlds
);
wordList pointTensorNames(objects.names(pointTensorField::typeName));
PtrList<pointTensorField> pointTensorFlds(pointTensorNames.size());
subsetPointFields(subsetter, pMesh, pointTensorNames, pointTensorFlds);
// Read dimensioned fields and subset
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
typedef volScalarField::Internal dimScalType;
wordList scalarDimNames(objects.names(dimScalType::typeName));
PtrList<dimScalType> scalarDimFlds(scalarDimNames.size());
subsetDimensionedFields(subsetter, scalarDimNames, scalarDimFlds);
typedef volVectorField::Internal dimVecType;
wordList vectorDimNames(objects.names(dimVecType::typeName));
PtrList<dimVecType> vectorDimFlds(vectorDimNames.size());
subsetDimensionedFields(subsetter, vectorDimNames, vectorDimFlds);
typedef volSphericalTensorField::Internal dimSphereType;
wordList sphericalTensorDimNames(objects.names(dimSphereType::typeName));
PtrList<dimSphereType> sphericalTensorDimFlds
(
sphericalTensorDimNames.size()
);
subsetDimensionedFields
(
subsetter,
sphericalTensorDimNames,
sphericalTensorDimFlds
);
typedef volSymmTensorField::Internal dimSymmTensorType;
wordList symmTensorDimNames(objects.names(dimSymmTensorType::typeName));
PtrList<dimSymmTensorType> symmTensorDimFlds(symmTensorDimNames.size());
subsetDimensionedFields(subsetter, symmTensorDimNames, symmTensorDimFlds);
typedef volTensorField::Internal dimTensorType;
wordList tensorDimNames(objects.names(dimTensorType::typeName));
PtrList<dimTensorType> tensorDimFlds(tensorDimNames.size());
subsetDimensionedFields(subsetter, tensorDimNames, tensorDimFlds);
// Write mesh and fields to new time
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if (overwrite || specifiedInstance)
if (fields)
{
runTime.setTime(instant(fieldsInstance), 0);
subsetter.subMesh().setInstance(meshInstance);
IOobjectList objects(mesh, runTime.timeName());
// Read vol fields and subset
// ~~~~~~~~~~~~~~~~~~~~~~~~~~
wordList scalarNames(objects.names(volScalarField::typeName));
PtrList<volScalarField> scalarFlds(scalarNames.size());
subsetVolFields(subsetter, scalarNames, scalarFlds);
wordList vectorNames(objects.names(volVectorField::typeName));
PtrList<volVectorField> vectorFlds(vectorNames.size());
subsetVolFields(subsetter, vectorNames, vectorFlds);
wordList sphericalTensorNames
(
objects.names(volSphericalTensorField::typeName)
);
PtrList<volSphericalTensorField> sphericalTensorFlds
(
sphericalTensorNames.size()
);
subsetVolFields(subsetter, sphericalTensorNames, sphericalTensorFlds);
wordList symmTensorNames(objects.names(volSymmTensorField::typeName));
PtrList<volSymmTensorField> symmTensorFlds(symmTensorNames.size());
subsetVolFields(subsetter, symmTensorNames, symmTensorFlds);
wordList tensorNames(objects.names(volTensorField::typeName));
PtrList<volTensorField> tensorFlds(tensorNames.size());
subsetVolFields(subsetter, tensorNames, tensorFlds);
// Read surface fields and subset
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
wordList surfScalarNames(objects.names(surfaceScalarField::typeName));
PtrList<surfaceScalarField> surfScalarFlds(surfScalarNames.size());
subsetSurfaceFields(subsetter, surfScalarNames, surfScalarFlds);
wordList surfVectorNames(objects.names(surfaceVectorField::typeName));
PtrList<surfaceVectorField> surfVectorFlds(surfVectorNames.size());
subsetSurfaceFields(subsetter, surfVectorNames, surfVectorFlds);
wordList surfSphericalTensorNames
(
objects.names(surfaceSphericalTensorField::typeName)
);
PtrList<surfaceSphericalTensorField> surfSphericalTensorFlds
(
surfSphericalTensorNames.size()
);
subsetSurfaceFields
(
subsetter,
surfSphericalTensorNames,
surfSphericalTensorFlds
);
wordList surfSymmTensorNames
(
objects.names(surfaceSymmTensorField::typeName)
);
PtrList<surfaceSymmTensorField> surfSymmTensorFlds
(
surfSymmTensorNames.size()
);
subsetSurfaceFields(subsetter, surfSymmTensorNames, surfSymmTensorFlds);
wordList surfTensorNames(objects.names(surfaceTensorField::typeName));
PtrList<surfaceTensorField> surfTensorFlds(surfTensorNames.size());
subsetSurfaceFields(subsetter, surfTensorNames, surfTensorFlds);
// Read point fields and subset
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
const pointMesh& pMesh = pointMesh::New(mesh);
wordList pointScalarNames(objects.names(pointScalarField::typeName));
PtrList<pointScalarField> pointScalarFlds(pointScalarNames.size());
subsetPointFields(subsetter, pMesh, pointScalarNames, pointScalarFlds);
wordList pointVectorNames(objects.names(pointVectorField::typeName));
PtrList<pointVectorField> pointVectorFlds(pointVectorNames.size());
subsetPointFields(subsetter, pMesh, pointVectorNames, pointVectorFlds);
wordList pointSphericalTensorNames
(
objects.names(pointSphericalTensorField::typeName)
);
PtrList<pointSphericalTensorField> pointSphericalTensorFlds
(
pointSphericalTensorNames.size()
);
subsetPointFields
(
subsetter,
pMesh,
pointSphericalTensorNames,
pointSphericalTensorFlds
);
wordList pointSymmTensorNames
(
objects.names(pointSymmTensorField::typeName)
);
PtrList<pointSymmTensorField> pointSymmTensorFlds
(
pointSymmTensorNames.size()
);
subsetPointFields
(
subsetter,
pMesh,
pointSymmTensorNames,
pointSymmTensorFlds
);
wordList pointTensorNames(objects.names(pointTensorField::typeName));
PtrList<pointTensorField> pointTensorFlds(pointTensorNames.size());
subsetPointFields(subsetter, pMesh, pointTensorNames, pointTensorFlds);
// Read dimensioned fields and subset
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
typedef volScalarField::Internal dimScalType;
wordList scalarDimNames(objects.names(dimScalType::typeName));
PtrList<dimScalType> scalarDimFlds(scalarDimNames.size());
subsetDimensionedFields(subsetter, scalarDimNames, scalarDimFlds);
typedef volVectorField::Internal dimVecType;
wordList vectorDimNames(objects.names(dimVecType::typeName));
PtrList<dimVecType> vectorDimFlds(vectorDimNames.size());
subsetDimensionedFields(subsetter, vectorDimNames, vectorDimFlds);
typedef volSphericalTensorField::Internal dimSphereType;
wordList sphericalTensorDimNames
(
objects.names(dimSphereType::typeName)
);
PtrList<dimSphereType> sphericalTensorDimFlds
(
sphericalTensorDimNames.size()
);
subsetDimensionedFields
(
subsetter,
sphericalTensorDimNames,
sphericalTensorDimFlds
);
typedef volSymmTensorField::Internal dimSymmTensorType;
wordList symmTensorDimNames(objects.names(dimSymmTensorType::typeName));
PtrList<dimSymmTensorType> symmTensorDimFlds(symmTensorDimNames.size());
subsetDimensionedFields
(
subsetter,
symmTensorDimNames,
symmTensorDimFlds
);
typedef volTensorField::Internal dimTensorType;
wordList tensorDimNames(objects.names(dimTensorType::typeName));
PtrList<dimTensorType> tensorDimFlds(tensorDimNames.size());
subsetDimensionedFields(subsetter, tensorDimNames, tensorDimFlds);
// Write mesh and fields to new time
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if (overwrite || specifiedInstance)
{
runTime.setTime(instant(fieldsInstance), 0);
subsetter.subMesh().setInstance(meshInstance);
}
else
{
runTime++;
}
Info<< "Writing subsetted mesh and fields to time "
<< runTime.timeName() << endl;
subsetter.subMesh().write();
// Subsetting adds 'subset' prefix. Rename field to be like original.
forAll(scalarFlds, i)
{
scalarFlds[i].rename(scalarNames[i]);
scalarFlds[i].write();
}
forAll(vectorFlds, i)
{
vectorFlds[i].rename(vectorNames[i]);
vectorFlds[i].write();
}
forAll(sphericalTensorFlds, i)
{
sphericalTensorFlds[i].rename(sphericalTensorNames[i]);
sphericalTensorFlds[i].write();
}
forAll(symmTensorFlds, i)
{
symmTensorFlds[i].rename(symmTensorNames[i]);
symmTensorFlds[i].write();
}
forAll(tensorFlds, i)
{
tensorFlds[i].rename(tensorNames[i]);
tensorFlds[i].write();
}
// Surface ones.
forAll(surfScalarFlds, i)
{
surfScalarFlds[i].rename(surfScalarNames[i]);
surfScalarFlds[i].write();
}
forAll(surfVectorFlds, i)
{
surfVectorFlds[i].rename(surfVectorNames[i]);
surfVectorFlds[i].write();
}
forAll(surfSphericalTensorFlds, i)
{
surfSphericalTensorFlds[i].rename(surfSphericalTensorNames[i]);
surfSphericalTensorFlds[i].write();
}
forAll(surfSymmTensorFlds, i)
{
surfSymmTensorFlds[i].rename(surfSymmTensorNames[i]);
surfSymmTensorFlds[i].write();
}
forAll(surfTensorNames, i)
{
surfTensorFlds[i].rename(surfTensorNames[i]);
surfTensorFlds[i].write();
}
// Point ones
forAll(pointScalarFlds, i)
{
pointScalarFlds[i].rename(pointScalarNames[i]);
pointScalarFlds[i].write();
}
forAll(pointVectorFlds, i)
{
pointVectorFlds[i].rename(pointVectorNames[i]);
pointVectorFlds[i].write();
}
forAll(pointSphericalTensorFlds, i)
{
pointSphericalTensorFlds[i].rename(pointSphericalTensorNames[i]);
pointSphericalTensorFlds[i].write();
}
forAll(pointSymmTensorFlds, i)
{
pointSymmTensorFlds[i].rename(pointSymmTensorNames[i]);
pointSymmTensorFlds[i].write();
}
forAll(pointTensorNames, i)
{
pointTensorFlds[i].rename(pointTensorNames[i]);
pointTensorFlds[i].write();
}
// DimensionedFields
forAll(scalarDimFlds, i)
{
scalarDimFlds[i].rename(scalarDimNames[i]);
scalarDimFlds[i].write();
}
forAll(vectorDimFlds, i)
{
vectorDimFlds[i].rename(vectorDimNames[i]);
vectorDimFlds[i].write();
}
forAll(sphericalTensorDimFlds, i)
{
sphericalTensorDimFlds[i].rename(sphericalTensorDimNames[i]);
sphericalTensorDimFlds[i].write();
}
forAll(symmTensorDimFlds, i)
{
symmTensorDimFlds[i].rename(symmTensorDimNames[i]);
symmTensorDimFlds[i].write();
}
forAll(tensorDimFlds, i)
{
tensorDimFlds[i].rename(tensorDimNames[i]);
tensorDimFlds[i].write();
}
}
else
{
runTime++;
}
// Write mesh to new time
// ~~~~~~~~~~~~~~~~~~~~~~
Info<< "Writing subsetted mesh and fields to time " << runTime.timeName()
<< endl;
subsetter.subMesh().write();
if (overwrite || specifiedInstance)
{
runTime.setTime(instant(fieldsInstance), 0);
subsetter.subMesh().setInstance(meshInstance);
}
else
{
runTime++;
}
Info<< "Writing subsetted mesh to time "
<< runTime.timeName() << endl;
// Subsetting adds 'subset' prefix. Rename field to be like original.
forAll(scalarFlds, i)
{
scalarFlds[i].rename(scalarNames[i]);
scalarFlds[i].write();
subsetter.subMesh().write();
}
forAll(vectorFlds, i)
{
vectorFlds[i].rename(vectorNames[i]);
vectorFlds[i].write();
}
forAll(sphericalTensorFlds, i)
{
sphericalTensorFlds[i].rename(sphericalTensorNames[i]);
sphericalTensorFlds[i].write();
}
forAll(symmTensorFlds, i)
{
symmTensorFlds[i].rename(symmTensorNames[i]);
symmTensorFlds[i].write();
}
forAll(tensorFlds, i)
{
tensorFlds[i].rename(tensorNames[i]);
tensorFlds[i].write();
}
// Surface ones.
forAll(surfScalarFlds, i)
{
surfScalarFlds[i].rename(surfScalarNames[i]);
surfScalarFlds[i].write();
}
forAll(surfVectorFlds, i)
{
surfVectorFlds[i].rename(surfVectorNames[i]);
surfVectorFlds[i].write();
}
forAll(surfSphericalTensorFlds, i)
{
surfSphericalTensorFlds[i].rename(surfSphericalTensorNames[i]);
surfSphericalTensorFlds[i].write();
}
forAll(surfSymmTensorFlds, i)
{
surfSymmTensorFlds[i].rename(surfSymmTensorNames[i]);
surfSymmTensorFlds[i].write();
}
forAll(surfTensorNames, i)
{
surfTensorFlds[i].rename(surfTensorNames[i]);
surfTensorFlds[i].write();
}
// Point ones
forAll(pointScalarFlds, i)
{
pointScalarFlds[i].rename(pointScalarNames[i]);
pointScalarFlds[i].write();
}
forAll(pointVectorFlds, i)
{
pointVectorFlds[i].rename(pointVectorNames[i]);
pointVectorFlds[i].write();
}
forAll(pointSphericalTensorFlds, i)
{
pointSphericalTensorFlds[i].rename(pointSphericalTensorNames[i]);
pointSphericalTensorFlds[i].write();
}
forAll(pointSymmTensorFlds, i)
{
pointSymmTensorFlds[i].rename(pointSymmTensorNames[i]);
pointSymmTensorFlds[i].write();
}
forAll(pointTensorNames, i)
{
pointTensorFlds[i].rename(pointTensorNames[i]);
pointTensorFlds[i].write();
}
// DimensionedFields
forAll(scalarDimFlds, i)
{
scalarDimFlds[i].rename(scalarDimNames[i]);
scalarDimFlds[i].write();
}
forAll(vectorDimFlds, i)
{
vectorDimFlds[i].rename(vectorDimNames[i]);
vectorDimFlds[i].write();
}
forAll(sphericalTensorDimFlds, i)
{
sphericalTensorDimFlds[i].rename(sphericalTensorDimNames[i]);
sphericalTensorDimFlds[i].write();
}
forAll(symmTensorDimFlds, i)
{
symmTensorDimFlds[i].rename(symmTensorDimNames[i]);
symmTensorDimFlds[i].write();
}
forAll(tensorDimFlds, i)
{
tensorDimFlds[i].rename(tensorDimNames[i]);
tensorDimFlds[i].write();
}
Info<< "End\n" << endl;

13
tutorials/lagrangian/reactingParcelFoam/hotBoxes/Allmesh
View File

@ -6,16 +6,16 @@ cd ${0%/*} || exit 1 # Run from this directory
rm -rf 0
# create the underlying block mesh
# Create the underlying block mesh
runApplication blockMesh
# create the set for the obstacles
# Create the set for the obstacles
runApplication topoSet
# create the obstacles - add obstacle patches to wallFilm patch
runApplication subsetMesh c0 -patch wallFilm -overwrite
# Create the obstacles - add obstacle patches to wallFilm patch
runApplication subsetMesh c0 -patch wallFilm -overwrite -noFields
# split the obstacle patches into cube[1-6]_patch[1-6]
# Split the obstacle patches into cube[1-6]_patch[1-6]
runApplication ./patchifyObstacles
# Create the wall film region via extrusion
@ -25,9 +25,6 @@ runApplication extrudeToRegionMesh -overwrite
rm -rf system/wallFilmRegion
cp -r system/wallFilmRegion.orig system/wallFilmRegion
find ./0 -maxdepth 1 -type f -exec \
sed -i -e "s/wallFilm/\"(region0_to.*)\"/g" {} \;
paraFoam -touch
paraFoam -touch -region wallFilmRegion

2
tutorials/multiphase/interFoam/RAS/floatingObject/Allrun
View File

@ -9,7 +9,7 @@ application=$(getApplication)
runApplication blockMesh
runApplication topoSet
runApplication subsetMesh -overwrite c0 -patch floatingObject
runApplication subsetMesh -overwrite c0 -patch floatingObject -noFields
runApplication setFields
runApplication $application

2
tutorials/multiphase/interFoam/laminar/damBreakWithObstacle/Allrun
View File

@ -6,7 +6,7 @@ cd ${0%/*} || exit 1 # Run from this directory
runApplication blockMesh
runApplication topoSet
runApplication subsetMesh -overwrite c0 -patch walls
runApplication subsetMesh -overwrite c0 -patch walls -noFields
runApplication setFields
runApplication $(getApplication)

2
tutorials/multiphase/potentialFreeSurfaceFoam/movingOscillatingBox/Allrun
View File

@ -11,7 +11,7 @@ runApplication blockMesh
runApplication -s 1 topoSet
runApplication subsetMesh -overwrite c0 -patch floatingObject
runApplication subsetMesh -overwrite c0 -patch floatingObject -noFields
runApplication -s selectBottom \
topoSet -dict system/topoSetDict-selectBottom

2
tutorials/multiphase/potentialFreeSurfaceFoam/oscillatingBox/Allrun
View File

@ -9,7 +9,7 @@ application=$(getApplication)
runApplication blockMesh
runApplication topoSet
runApplication subsetMesh -overwrite c0 -patch floatingObject
runApplication subsetMesh -overwrite c0 -patch floatingObject -noFields
runApplication $application