In parallel the sets are reconstructed. e.g.
mpirun -np 6 checkMesh -parallel -allGeometry -allTopology -writeSets vtk
will create a postProcessing/ folder with the vtk files of the
(reconstructed) faceSets and cellSets.
Also improved analysis of disconnected regions now also checks for point
connectivity with is useful for detecting if AMI regions have duplicate
points.
Patch contributed by Mattijs Janssens
splitMeshRegions: handle flipping of faces for surface fields
subsetMesh: subset dimensionedFields
decomposePar: use run-time selection of decomposition constraints. Used to
keep cells on particular processors. See the decomposeParDict in
$FOAM_UTILITIES/parallel/decomposePar:
- preserveBaffles: keep baffle faces on same processor
- preserveFaceZones: keep faceZones owner and neighbour on same processor
- preservePatches: keep owner and neighbour on same processor. Note: not
suitable for cyclicAMI since these are not coupled on the patch level
- singleProcessorFaceSets: keep complete faceSet on a single processor
- refinementHistory: keep cells originating from a single cell on the
same processor.
decomposePar: clean up decomposition of refinement data from snappyHexMesh
reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)
reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)
redistributePar:
- corrected mapping surfaceFields
- adding processor patches in order consistent with decomposePar
argList: check that slaves are running same version as master
fvMeshSubset: move to dynamicMesh library
fvMeshDistribute:
- support for mapping dimensionedFields
- corrected mapping of surfaceFields
parallel routines: allow parallel running on single processor
Field: support for
- distributed mapping
- mapping with flipping
mapDistribute: support for flipping
AMIInterpolation: avoid constructing localPoints
to have the prefix 'write' rather than 'output'
So outputTime() -> writeTime()
but 'outputTime()' is still supported for backward-compatibility.
Also removed the redundant secondary-writing functionality from Time
which has been superseded by the 'writeRegisteredObject' functionObject.
These new names are more consistent and logical because:
primitiveField():
primitiveFieldRef():
Provides low-level access to the Field<Type> (primitive field)
without dimension or mesh-consistency checking. This should only be
used in the low-level functions where dimensional consistency is
ensured by careful programming and computational efficiency is
paramount.
internalField():
internalFieldRef():
Provides access to the DimensionedField<Type, GeoMesh> of values on
the internal mesh-type for which the GeometricField is defined and
supports dimension and checking and mesh-consistency checking.
The deprecated non-const tmp functionality is now on the compiler switch
NON_CONST_TMP which can be enabled by adding -DNON_CONST_TMP to EXE_INC
in the Make/options file. However, it is recommended to upgrade all
code to the new safer tmp by using the '.ref()' member function rather
than the non-const '()' dereference operator when non-const access to
the temporary object is required.
Please report any problems on Mantis.
Henry G. Weller
CFD Direct.
The built-in explicit symplectic integrator has been replaced by a
general framework supporting run-time selectable integrators. Currently
the explicit symplectic, implicit Crank-Nicolson and implicit Newmark
methods are provided, all of which are 2nd-order in time:
Symplectic 2nd-order explicit time-integrator for 6DoF solid-body motion:
Reference:
Dullweber, A., Leimkuhler, B., & McLachlan, R. (1997).
Symplectic splitting methods for rigid body molecular dynamics.
The Journal of chemical physics, 107(15), 5840-5851.
Can only be used for explicit integration of the motion of the body,
i.e. may only be called once per time-step, no outer-correctors may be
applied. For implicit integration with outer-correctors choose either
CrankNicolson or Newmark schemes.
Example specification in dynamicMeshDict:
solver
{
type symplectic;
}
Newmark 2nd-order time-integrator for 6DoF solid-body motion:
Reference:
Newmark, N. M. (1959).
A method of computation for structural dynamics.
Journal of the Engineering Mechanics Division, 85(3), 67-94.
Example specification in dynamicMeshDict:
solver
{
type Newmark;
gamma 0.5; // Velocity integration coefficient
beta 0.25; // Position integration coefficient
}
Crank-Nicolson 2nd-order time-integrator for 6DoF solid-body motion:
The off-centering coefficients for acceleration (velocity integration) and
velocity (position/orientation integration) may be specified but default
values of 0.5 for each are used if they are not specified. With the default
off-centering this scheme is equivalent to the Newmark scheme with default
coefficients.
Example specification in dynamicMeshDict:
solver
{
type CrankNicolson;
aoc 0.5; // Acceleration off-centering coefficient
voc 0.5; // Velocity off-centering coefficient
}
Both the Newmark and Crank-Nicolson are proving more robust and reliable
than the symplectic method for solving complex coupled problems and the
tutorial cases have been updated to utilize this.
In this new framework it would be straight forward to add other methods
should the need arise.
Henry G. Weller
CFD Direct
Command-line option handling:
+ If -all specified or no refineMeshDict exists or, refine all cells
+ If -dict <file> specified refine according to <file>
+ If refineMeshDict exists refine according to refineMeshDict
When the refinement or all cells is selected apply 3D refinement for 3D
cases and 2D refinement for 2D cases.
