Commit Graph

534 Commits

Author SHA1 Message Date
2c61071f99 Merge branch 'master' of github.com:OpenFOAM/OpenFOAM-dev 2016-06-09 14:52:04 +01:00
5f950e6aa3 applications/utilities/miscellaneous/foamDictionary/Make/options: Removed debug options 2016-06-07 16:27:22 +01:00
615edfbc7d foamDictionary: New utility to print and manipulate dictionary entries
Replaces the dictionary access functionality of foamInfoExec and
provides additional options to edit individual entries.
Contributed by Mattijs Janssens
2016-06-03 19:24:05 +01:00
c33e34a532 foamInfoExec: Time listing functionality superseded by foamListTimes 2016-06-03 19:23:27 +01:00
dc4c881f25 postProcess: Added '-list' option to list the available configured functionObjects 2016-06-01 16:28:07 +01:00
8a915d0617 includeEntry, includeEtcEntry, includeIfPresentEntry: report -> log
for consistency with the 'Log' macro.
2016-05-31 17:17:24 +01:00
706ec804fd Added forward declaration of friend functions 2016-05-30 13:21:29 +01:00
691e7186b4 ACMI: Corrected conservation issue
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2057
2016-05-30 08:29:11 +01:00
e34763b392 Added forward declaration of friend functions 2016-05-30 08:28:35 +01:00
28033214a7 createBaffles: filter zero-sized patches
Resolves patch request http://bugs.openfoam.org/view.php?id=2103
Patch contributed by Mattijs Janssens
2016-05-29 22:51:15 +01:00
5af2515f87 buoyantBoussinesqPimpleFoam: Corrected handling of time-step adjustment
Resolves bug-report http://bugs.openfoam.org/view.php?id=2104
2016-05-29 22:26:53 +01:00
8b672f0f1a postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities
with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
2016-05-28 18:58:48 +01:00
e22c65dd8e Standardized the selection of required and optional fields in BCs, fvOptions, functionObjects etc.
In most boundary conditions, fvOptions etc. required and optional fields
to be looked-up from the objectRegistry are selected by setting the
keyword corresponding to the standard field name in the BC etc. to the
appropriate name in the objectRegistry.  Usually a default is provided
with sets the field name to the keyword name, e.g. in the
totalPressureFvPatchScalarField the velocity is selected by setting the
keyword 'U' to the appropriate name which defaults to 'U':

        Property     | Description             | Required    | Default value
        U            | velocity field name     | no          | U
        phi          | flux field name         | no          | phi
        .
        .
        .

However, in some BCs and functionObjects and many fvOptions another
convention is used in which the field name keyword is appended by 'Name'
e.g.

        Property     | Description             | Required    | Default value
        pName        | pressure field name     | no          | p
        UName        | velocity field name     | no          | U

This difference in convention is unnecessary and confusing, hinders code
and dictionary reuse and complicates code maintenance.  In this commit
the appended 'Name' is removed from the field selection keywords
standardizing OpenFOAM on the first convention above.
2016-05-21 20:28:20 +01:00
2037fc02cf functionObjects, foamCalcFunctions, fvOptions: Standardized keywords for selecting fields and objects
Generally fields and objects are selected using the 'field[s]' and
'object[s]' keywords but this was not consistent between all
functionObject, fvOptions etc. and now fixed by applying the following
renaming:

fieldName -> field
fieldNames -> fields
objectName -> object
objectNames -> objects
2016-05-21 20:15:21 +01:00
4500971827 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
982ebe6f59 functionObjects::partialWrite: Redundant and removed
the equivalent functionality is provided by the writeRegisteredObject
   functionObject in a MUCH simpler, easier and extensible manner.

functionObject: Removed the now redundant 'timeSet' function.
2016-05-18 12:23:29 +01:00
154a4c9e34 reconstructPar: Added '-noFields' option 2016-05-17 09:25:29 +01:00
18725ed3ac functionObjects: Renamed dictionary entry 'functionObjectLibs' -> 'libs'
This changes simplifies the specification of functionObjects in
controlDict and is consistent with the 'libs' option in controlDict to
load special solver libraries.

Support for the old 'functionObjectLibs' name is supported for backward compatibility.
2016-05-16 22:09:01 +01:00
4ba3463052 functionObjects: Simply functionObjects requiring access to the fvMesh using fvMeshFunctionObject 2016-05-16 16:21:06 +01:00
91aba2db2e functionObjects: rewritten to all be derived from 'functionObject'
- Avoids the need for the 'OutputFilterFunctionObject' wrapper
  - Time-control for execution and writing is now provided by the
    'timeControlFunctionObject' which instantiates the processing
    'functionObject' and controls its operation.
  - Alternative time-control functionObjects can now be written and
    selected at run-time without the need to compile wrapped version of
    EVERY existing functionObject which would have been required in the
    old structure.
  - The separation of 'execute' and 'write' functions is now formalized in the
    'functionObject' base-class and all derived classes implement the
    two functions.
  - Unnecessary implementations of functions with appropriate defaults
    in the 'functionObject' base-class have been removed reducing
    clutter and simplifying implementation of new functionObjects.
  - The 'coded' 'functionObject' has also been updated, simplified and tested.
  - Further simplification is now possible by creating some general
    intermediate classes derived from 'functionObject'.
2016-05-15 16:40:01 +01:00
1441f8cab0 Patches contributed by Mattijs Janssens:
splitMeshRegions: handle flipping of faces for surface fields

subsetMesh: subset dimensionedFields

decomposePar: use run-time selection of decomposition constraints. Used to
    keep cells on particular processors. See the decomposeParDict in

$FOAM_UTILITIES/parallel/decomposePar:
  - preserveBaffles: keep baffle faces on same processor
  - preserveFaceZones: keep faceZones owner and neighbour on same processor
  - preservePatches: keep owner and neighbour on same processor. Note: not
    suitable for cyclicAMI since these are not coupled on the patch level
  - singleProcessorFaceSets: keep complete faceSet on a single processor
  - refinementHistory: keep cells originating from a single cell on the
    same processor.

decomposePar: clean up decomposition of refinement data from snappyHexMesh

reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)

reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)

redistributePar:
  - corrected mapping surfaceFields
  - adding processor patches in order consistent with decomposePar

argList: check that slaves are running same version as master

fvMeshSubset: move to dynamicMesh library

fvMeshDistribute:
  - support for mapping dimensionedFields
  - corrected mapping of surfaceFields

parallel routines: allow parallel running on single processor

Field: support for
  - distributed mapping
  - mapping with flipping

mapDistribute: support for flipping

AMIInterpolation: avoid constructing localPoints
2016-05-15 16:36:48 +01:00
26658647fa snappyHexMesh: Automatically remove zero-sized patches
All patches are preserved if the 'keepPatches' option is set true.
Patch contributed by Mattijs Janssens
2016-05-13 17:47:38 +01:00
90ba6113b5 checkMesh: Updated the closed-ness test for ACMI to use FV
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2088
2016-05-13 16:23:02 +01:00
758dfc2c1f Standardized the naming of functions which control the writing of fields etc.
to have the prefix 'write' rather than 'output'

So outputTime() -> writeTime()

but 'outputTime()' is still supported for backward-compatibility.

Also removed the redundant secondary-writing functionality from Time
which has been superseded by the 'writeRegisteredObject' functionObject.
2016-05-12 17:38:01 +01:00
71290b4d9e functionObjects: Changed options 'outputControl' -> 'writeControl' and 'outputInterval' -> 'writeInterval'
for consistency with the time controls in controlDict and to avoid
unnecessary confusion.  All code and tutorials have been updated.

The old names 'outputControl' and 'outputInterval' are but supported for
backward compatibility but deprecated.
2016-05-12 11:38:11 +01:00
901f6cde1d functionObjects: Removed the redundant "viable" member function
Construction failure and recovery is not handled with exceptions in functionObjectList
2016-05-11 12:57:17 +01:00
8663237a0f src/postProcessing/functionObjects: Removed unused IOOutputFilter clutter 2016-05-10 12:54:42 +01:00
ad3c8f6dec writeVTK: New functionObject to write fields is VTK format
Description
    This functionObject writes objects registered to the database in VTK format
    using the foamToVTK library.

    Currently only the writing of the cell-values of volFields is supported but
    support for other field types, patch fields, Lagrangian data etc. will be
    added.

    Example of function object specification:
    \verbatim
        writeVTK1
        {
            type        writeVTK;
            functionObjectLibs ("libIOFunctionObjects.so");
            ...
            objectNames (obj1 obj2);
        }
    \endverbatim

    \heading Function object usage
    \table
        Property     | Description             | Required    | Default value
        type         | type name: writeVTK     | yes         |
        objectNames  | objects to write        | yes         |
    \endtable
2016-05-10 10:06:19 +01:00
64aac63b03 applications/solvers/heatTransfer/chtMultiRegionFoam: Check there are fluid meshes present for the '-postProcess' option 2016-05-09 19:55:11 +01:00
3be1d14af8 execFlowFunctionObjects: Replaced with script providing instructions to use the '-postProcess' option 2016-05-09 17:02:00 +01:00
4364ea2567 applications/solvers/heatTransfer: Added -postProcess option
See also commit 30e2f912e5
2016-05-09 16:28:48 +01:00
4c8556709a applications/solvers: Moved createMRF.H into createField.H
to ensure MRF functionality is available for the -postProcess option
2016-05-09 16:06:12 +01:00
0cf2b3ce73 applications/solvers/lagrangian: Added -postProcess option
See also commit 30e2f912e5
2016-05-09 15:55:23 +01:00
bbcd1a7b24 Updated headers 2016-05-09 15:23:36 +01:00
88ec5f9253 applications/solvers/discreteMethods: Added -postProcess option
See also commit 30e2f912e5
2016-05-09 15:23:07 +01:00
0478ebf171 applications/solvers/compressible: Added -postProcess option
See also commit 30e2f912e5
2016-05-09 15:16:22 +01:00
19aefe5a26 applications/solvers/combustion: Added -postProcess option
See also commit 30e2f912e5
2016-05-09 14:51:21 +01:00
15545786b4 applications/solvers: Added -postProcess option
See also commit 30e2f912e5
2016-05-09 14:08:15 +01:00
4c4f68c283 applications/solvers/incompressible: Added -postProcess option
See also commit 30e2f912e5
2016-05-08 22:40:42 +01:00
4cadaeb3cc applications/solvers/multiphase: Added -postProcess option
See also commit 30e2f912e5
2016-05-08 20:57:08 +01:00
ed3af8dfbf interPhaseChangeFoam, multiphaseInterFoam, potentialFreeSurfaceFoam: Added -postProcess option
See also commit 30e2f912e5
2016-05-08 17:23:36 +01:00
51281bdf8e interFoam: Added -postProcess option
See also commit 30e2f912e5
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1301
2016-05-08 14:32:23 +01:00
30e2f912e5 simpleFoam: Added experimental "-postProcess" option
Executes application functionObjects to post-process existing results.

    If the "dict" argument is specified the functionObjectList is constructed
    from that dictionary otherwise the functionObjectList is constructed from
    the "functions" sub-dictionary of "system/controlDict"

    Multiple time-steps may be processed and the standard utility time
    controls are provided.

This functionality is equivalent to execFlowFunctionObjects but in a
more efficient and general manner and will be included in all the
OpenFOAM solvers if it proves effective and maintainable.

The command-line options available with the "-postProcess" option may be
obtained by

simpleFoam -help -postProcess

Usage: simpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

Henry G. Weller
CFD Direct Ltd.
2016-05-08 09:33:46 +01:00
5b30f25b26 foamToVTK: Added Allwmake 2016-05-06 17:42:22 +01:00
9fc0987fbb foamDebugSwitches: Updated for changes in functionObjects 2016-05-06 17:41:56 +01:00
b72b9dcf88 primitives/direction: Changed from "char" to "int8_t" and added IO operators
to avoid problems when writing "nComponents"
2016-05-06 17:40:49 +01:00
28c753f52e foamToVTK: Use UPtrList rather than PtrList 2016-05-06 14:11:38 +01:00
dca3d758cd foamToVTK: Separated into the library libfoamToVTK and the utility foamToVTK 2016-05-04 15:16:33 +01:00
52e79b4703 functionObjects: Updated docs 2016-05-04 08:51:39 +01:00
92c4c12a08 Multiphase solvers: Update p_rgh following density changes 2016-05-03 15:51:15 +01:00