A set of routines for cutting polyhedra have been added. These can cut
polyhedral cells based on the adjacent point values and an iso-value
which defines the surface. The method operates directly on the
polyhedral cells; it does not decompose them into tetrahedra at any
point. The routines can compute the cut topology as well as integrals of
properties above and below the cut surface.
An iso-surface algorithm has been added based on these polyhedral
cutting routines. It is significantly more robust than the previous
algorithm, and produces compact surfaces equivalent to the previous
algorithm's maximum filtering level. It is also approximately 3 times
faster than the previous algorithm, and 10 times faster when run
repeatedly on the same set of cells (this is because some addressing is
cached and reused).
This algorithm is used by the 'isoSurface', 'distanceSurface' and
'cutPlane' sampled surfaces.
The 'cutPlane' sampled surface is a renaming of 'cuttingPlane' to make
it consistent with the corresponding packaged function. The name
'cuttingPlane' has been retained for backwards compatibility and can
still be used to select a 'cutPlane' surface. The legacy 'plane' surface
has been removed.
The 'average' keyword has been removed from specification of these
sampled surfaces as cell-centred values are no longer used in the
generation of or interpolation to an iso-surface. The 'filtering'
keyword has also been removed as it relates to options within the
previous algorithm. Zone support has been reinstated into the
'isoSurface' sampled surface. Interpolation to all these sampled
surfaces has been corrected to exactly match the user-selected
interpolation scheme, and the interpolation procedure no longer
unnecessarily re-generates data that is already available.
Lagrangian is now compatible with the meshToMesh topology changer. If a
cloud is being simulated and this topology changer is active, then the
cloud data will be automatically mapped between the specified sequence
of meshes in the same way as the finite volume data. This works both for
serial and parallel simulations.
In addition, mapFieldsPar now also supports mapping of Lagrangian data
when run in parallel.
Sampled sets and streamlines now write all their fields to the same
file. This prevents excessive duplication of the geometry and makes
post-processing tasks more convenient.
"axis" entries are now optional in sampled sets and streamlines. When
omitted, a default entry will be used, which is chosen appropriately for
the coordinate set and the write format. Some combinations are not
supported. For example, a scalar ("x", "y", "z" or "distance") axis
cannot be used to write in the vtk format, as vtk requires 3D locations
with which to associate data. Similarly, a point ("xyz") axis cannot be
used with the gnuplot format, as gnuplot needs a single scalar to
associate with the x-axis.
Streamlines can now write out fields of any type, not just scalars and
vectors, and there is no longer a strict requirement for velocity to be
one of the fields.
Streamlines now output to postProcessing/<functionName>/time/<file> in
the same way as other functions. The additional "sets" subdirectory has
been removed.
The raw set writer now aligns columns correctly.
The handling of segments in coordSet and sampledSet has been
fixed/completed. Segments mean that a coordinate set can represent a
number of contiguous lines, disconnected points, or some combination
thereof. This works in parallel; segments remain contiguous across
processor boundaries. Set writers now only need one write method, as the
previous "writeTracks" functionality is now handled by streamlines
providing the writer with the appropriate segment structure.
Coordinate sets and set writers now have a convenient programmatic
interface. To write a graph of A and B against some coordinate X, in
gnuplot format, we can call the following:
setWriter::New("gnuplot")->write
(
directoryName,
graphName,
coordSet(true, "X", X), // <-- "true" indicates a contiguous
"A", // line, "false" would mean
A, // disconnected points
"B",
B
);
This write function is variadic. It supports any number of
field-name-field pairs, and they can be of any primitive type.
Support for Jplot and Xmgrace formats has been removed. Raw, CSV,
Gnuplot, VTK and Ensight formats are all still available.
The old "graph" functionality has been removed from the code, with the
exception of the randomProcesses library and associated applications
(noise, DNSFoam and boxTurb). The intention is that these should also
eventually be converted to use the setWriters. For now, so that it is
clear that the "graph" functionality is not to be used elsewhere, it has
been moved into a subdirectory of the randomProcesses library.
This prevents excessive duplication of surface geometry and makes
post-processing tasks in paraview more convenient.
The Nastran and Star-CD surface formats were found not to work, so
support for these output types has been removed. Raw, VTK, Foam and
Ensight formats are all still available.
The writer class has been renamed setWriter in order to clarify its
usage. The coordSet and setWriter classes have been moved into the
sampling library, as this fits their usage.
Added sets for sampling the cell-centres and face-centres of a cellSet
or faceSet. Example usage:
sets
(
c0
{
type cellSet;
set c0;
axis xyz;
}
f0
{
type faceSet;
set f0;
axis xyz;
}
);
The sampled sets have been renamed in a more explicit and consistent
manner, and two new ones have also been added. The available sets are as
follows:
arcUniform: Uniform samples along an arc. Replaces "circle", and
adds the ability to sample along only a part of the circle's
circumference. Example:
{
type arcUniform;
centre (0.95 0 0.25);
normal (1 0 0);
radial (0 0 0.25);
startAngle -1.57079633;
endAngle 0.52359878;
nPoints 200;
axis x;
}
boundaryPoints: Specified point samples associated with a subset of
the boundary. Replaces "patchCloud". Example:
{
type boundaryPoints;
patches (inlet1 inlet2);
points ((0 -0.05 0.05) (0 -0.05 0.1) (0 -0.05 0.15));
maxDistance 0.01;
axis x;
}
boundaryRandom: Random samples within a subset of the boundary.
Replaces "patchSeed", but changes the behaviour to be entirely
random. It does not seed the boundary face centres first. Example:
{
type boundaryRandom;
patches (inlet1 inlet2);
nPoints 1000;
axis x;
}
boxUniform: Uniform grid of samples within a axis-aligned box.
Replaces "array". Example:
{
type boxUniform;
box (0.95 0 0.25) (1.2 0.25 0.5);
nPoints (2 4 6);
axis x;
}
circleRandom: Random samples within a circle. New. Example:
{
type circleRandom;
centre (0.95 0 0.25);
normal (1 0 0);
radius 0.25;
nPoints 200;
axis x;
}
lineFace: Face-intersections along a line. Replaces "face". Example:
{
type lineFace;
start (0.6 0.6 0.5);
end (0.6 -0.3 -0.1);
axis x;
}
lineCell: Cell-samples along a line at the mid-points in-between
face-intersections. Replaces "midPoint". Example:
{
type lineCell;
start (0.5 0.6 0.5);
end (0.5 -0.3 -0.1);
axis x;
}
lineCellFace: Combination of "lineFace" and "lineCell". Replaces
"midPointAndFace". Example:
{
type lineCellFace;
start (0.55 0.6 0.5);
end (0.55 -0.3 -0.1);
axis x;
}
lineUniform: Uniform samples along a line. Replaces "uniform".
Example:
{
type lineUniform;
start (0.65 0.3 0.3);
end (0.65 -0.3 -0.1);
nPoints 200;
axis x;
}
points: Specified points. Replaces "cloud" when the ordered flag is
false, and "polyLine" when the ordered flag is true. Example:
{
type points;
points ((0 -0.05 0.05) (0 -0.05 0.1) (0 -0.05 0.15));
ordered yes;
axis x;
}
sphereRandom: Random samples within a sphere. New. Example:
{
type sphereRandom;
centre (0.95 0 0.25);
radius 0.25;
nPoints 200;
axis x;
}
triSurfaceMesh: Samples from all the points of a triSurfaceMesh.
Replaces "triSurfaceMeshPointSet". Example:
{
type triSurfaceMesh;
surface "surface.stl";
axis x;
}
The headers have also had documentation added. Example usage and a
description of the control parameters now exists for all sets.
In addition, a number of the algorithms which generate the sets have
been refactored or rewritten. This was done either to take advantage of
the recent changes to random number generation, or to remove ad-hoc
fixes that were made unnecessary by the barycentric tracking algorithm.
For compatibility with all the mesh and related classes in OpenFOAM The 'normal'
function of the 'triangle', 'triFace' and 'face' classes now returns the unit
normal vector rather than the vector area which is now provided by the 'area'
function.
- Avoids the need for the 'OutputFilterFunctionObject' wrapper
- Time-control for execution and writing is now provided by the
'timeControlFunctionObject' which instantiates the processing
'functionObject' and controls its operation.
- Alternative time-control functionObjects can now be written and
selected at run-time without the need to compile wrapped version of
EVERY existing functionObject which would have been required in the
old structure.
- The separation of 'execute' and 'write' functions is now formalized in the
'functionObject' base-class and all derived classes implement the
two functions.
- Unnecessary implementations of functions with appropriate defaults
in the 'functionObject' base-class have been removed reducing
clutter and simplifying implementation of new functionObjects.
- The 'coded' 'functionObject' has also been updated, simplified and tested.
- Further simplification is now possible by creating some general
intermediate classes derived from 'functionObject'.
The deprecated non-const tmp functionality is now on the compiler switch
NON_CONST_TMP which can be enabled by adding -DNON_CONST_TMP to EXE_INC
in the Make/options file. However, it is recommended to upgrade all
code to the new safer tmp by using the '.ref()' member function rather
than the non-const '()' dereference operator when non-const access to
the temporary object is required.
Please report any problems on Mantis.
Henry G. Weller
CFD Direct.
