The majority of input parameters now support automatic unit conversion.
Units are specified within square brackets, either before or after the
value. Primitive parameters (e.g., scalars, vectors, tensors, ...),
dimensioned types, fields, Function1-s and Function2-s all support unit
conversion in this way.
Unit conversion occurs on input only. OpenFOAM writes out all fields and
parameters in standard units. It is recommended to use '.orig' files in
the 0 directory to preserve user-readable input if those files are being
modified by pre-processing applications (e.g., setFields).
For example, to specify a volumetric flow rate inlet boundary in litres
per second [l/s], rather than metres-cubed per second [m^3/s], in 0/U:
boundaryField
{
inlet
{
type flowRateInletVelocity;
volumetricFlowRate 0.1 [l/s];
value $internalField;
}
...
}
Or, to specify the pressure field in bar, in 0/p:
internalField uniform 1 [bar];
Or, to convert the parameters of an Arrhenius reaction rate from a
cm-mol-kcal unit system, in constant/chemistryProperties:
reactions
{
methaneReaction
{
type irreversibleArrhenius;
reaction "CH4^0.2 + 2O2^1.3 = CO2 + 2H2O";
A 6.7e12 [(mol/cm^3)^-0.5/s];
beta 0;
Ea 48.4 [kcal/mol];
}
}
Or, to define a time-varying outlet pressure using a CSV file in which
the pressure column is in mega-pascals [MPa], in 0/p:
boundaryField
{
outlet
{
type uniformFixedValue;
value
{
type table;
format csv;
nHeaderLine 1;
units ([s] [MPa]); // <-- new units entry
columns (0 1);
mergeSeparators no;
file "data/pressure.csv";
outOfBounds clamp;
interpolationScheme linear;
}
}
...
}
(Note also that a new 'columns' entry replaces the old 'refColumn' and
'componentColumns'. This is is considered to be more intuitive, and has
a consistent syntax with the new 'units' entry. 'columns' and
'componentColumns' have been retained for backwards compatibility and
will continue to work for the time being.)
Unit definitions can be added in the global or case controlDict files.
See UnitConversions in $WM_PROJECT_DIR/etc/controlDict for examples.
Currently available units include:
Standard: kg m s K kmol A Cd
Derived: Hz N Pa J W g um mm cm km l ml us ms min hr mol
rpm bar atm kPa MPa cal kcal cSt cP % rad rot deg
A user-time unit is also provided if user-time is in operation. This
allows it to be specified locally whether a parameter relates to
real-time or to user-time. For example, to define a mass source that
ramps up from a given engine-time (in crank-angle-degrees [CAD]) over a
duration in real-time, in constant/fvModels:
massSource1
{
type massSource;
points ((1 2 3));
massFlowRate
{
type scale;
scale linearRamp;
start 20 [CAD];
duration 50 [ms];
value 0.1 [g/s];
}
}
Specified units will be checked against the parameter's dimensions where
possible, and an error generated if they are not consistent. For the
dimensions to be available for this check, the code requires
modification, and work propagating this change across OpenFOAM is
ongoing. Unit conversions are still possible without these changes, but
the validity of such conversions will not be checked.
Units are no longer permitted in 'dimensions' entries in field files.
These 'dimensions' entries can now, instead, take the names of
dimensions. The names of the available dimensions are:
Standard: mass length time temperature
moles current luminousIntensity
Derived: area volume rate velocity momentum acceleration density
force energy power pressure kinematicPressure
compressibility gasConstant specificHeatCapacity
kinematicViscosity dynamicViscosity thermalConductivity
volumetricFlux massFlux
So, for example, a 0/epsilon file might specify the dimensions as
follows:
dimensions [energy/mass/time];
And a 0/alphat file might have:
dimensions [thermalConductivity/specificHeatCapacity];
*** Development Notes ***
A unit conversion can construct trivially from a dimension set,
resulting in a "standard" unit with a conversion factor of one. This
means the functions which perform unit conversion on read can be
provided dimension sets or unit conversion objects interchangeably.
A basic `dict.lookup<vector>("Umean")` call will do unit conversion, but
it does not know the parameter's dimensions, so it cannot check the
validity of the supplied units. A corresponding lookup function has been
added in which the dimensions or units can be provided; in this case the
corresponding call would be `dict.lookup<vector>("Umean", dimVelocity)`.
This function enables additional checking and should be used wherever
possible.
Function1-s and Function2-s have had their constructors and selectors
changed so that dimensions/units must be specified by calling code. In
the case of Function1, two unit arguments must be given; one for the
x-axis and one for the value-axis. For Function2-s, three must be
provided.
In some cases, it is desirable (or at least established practice), that
a given non-standard unit be used in the absence of specific
user-defined units. Commonly this includes reading angles in degrees
(rather than radians) and reading times in user-time (rather than
real-time). The primitive lookup functions and Function1 and Function2
selectors both support specifying a non-standard default unit. For
example, `theta_ = dict.lookup<scalar>("theta", unitDegrees)` will read
an angle in degrees by default. If this is done within a model which
also supports writing then the write call must be modified accordingly
so that the data is also written out in degrees. Overloads of writeEntry
have been created for this purpose. In this case, the angle theta should
be written out with `writeEntry(os, "theta", unitDegrees, theta_)`.
Function1-s and Function2-s behave similarly, but with greater numbers
of dimensions/units arguments as before.
The non-standard user-time unit can be accessed by a `userUnits()`
method that has been added to Time. Use of this user-time unit in the
construction of Function1-s should prevent the need for explicit
user-time conversion in boundary conditions and sub-models and similar.
Some models might contain non-typed stream-based lookups of the form
`dict.lookup("p0") >> p0_` (e.g., in a re-read method), or
`Umean_(dict.lookup("Umean"))` (e.g., in an initialiser list). These
calls cannot facilitate unit conversion and are therefore discouraged.
They should be replaced with
`p0_ = dict.lookup<scalar>("p0", dimPressure)` and
`Umean_(dict.lookup<vector>("Umean", dimVelocity))` and similar whenever
they are found.
Now both the checkMesh utility and functionObject operate in the same manner
with the same controls, executing the same checkGeometry and checkTopology
functions from the new meshCheck library. The controls have been updated and
made more consistent and flexible, in particular by the addition of optional
user specification for the non-orthogonality and skewness error thresholds:
Application
checkMesh
Description
Checks validity of a mesh.
Usage
\b checkMesh [OPTION]
Options:
- \par noTopology
Skip checking the mesh topology
- \par -allTopology
Check all (including non finite-volume specific) addressing
- \par -allGeometry
Check all (including non finite-volume specific) geometry
- \par -meshQuality
Check against user defined (in \a system/meshQualityDict) quality
settings
- \par -region \<name\>
Specify an alternative mesh region.
- \par -writeSurfaces
Reconstruct cellSets and faceSets of problem faces and write to
postProcessing directory.
- \par -surfaceFormat <format>
Format used to write the cellSets and faceSets surfaces
e.g. vtk or ensight.
- \par -writeSets
Reconstruct pointSets of problem points nd write to
postProcessing directory.
- \par -setFormat <format>
Format used to write the pointSets
e.g. vtk or ensight.
- \par -nonOrthThreshold <threshold value in degrees>
Threshold in degrees for reporting non-orthogonality errors,
default: 70"
- \par -skewThreshold <threshold value>
Threshold for reporting skewness errors, default: 4.
Class
Foam::functionObjects::checkMesh
Description
Executes primitiveMesh::checkMesh(true) every execute time for which the
mesh changed, i.e. moved or changed topology.
Useful to check the correctness of changing and morphing meshes.
Usage
\table
Property | Description | Required | Default value
type | type name: checkMesh | yes |
noTopology | Skip checking the mesh topology | no | false
allTopology | Check all addressing | no | false
allGeometry | Check all geometry | no | false
writeSurfaces | Reconstruct and write problem faces | no | false
surfaceFormat | Format for problem faceSets | no | vtk
writeSets | Reconstruct and write problem points | no | false
setFormat | Format used to write the problem pointSets | no | vtk
nonOrthThreshold | Threshold for non-orthogonality errors | no | 70 deg
skewThreshold | Threshold for reporting skewness errors | no | 4
\endtable
Example of checkMesh specification:
\verbatim
checkMesh
{
type checkMesh;
libs ("libutilityFunctionObjects.so");
executeControl timeStep;
executeInterval 10;
allGeometry true;
allTopology true;
writeSurfaces true;
surfaceFormat vtk;
writeSets true;
setFormat vtk;
}
\endverbatim
or using the standard configuration file:
\verbatim
#includeFunc checkMesh(executeInterval=10, allGeometry=true)
\endverbatim
Sampled sets and streamlines now write all their fields to the same
file. This prevents excessive duplication of the geometry and makes
post-processing tasks more convenient.
"axis" entries are now optional in sampled sets and streamlines. When
omitted, a default entry will be used, which is chosen appropriately for
the coordinate set and the write format. Some combinations are not
supported. For example, a scalar ("x", "y", "z" or "distance") axis
cannot be used to write in the vtk format, as vtk requires 3D locations
with which to associate data. Similarly, a point ("xyz") axis cannot be
used with the gnuplot format, as gnuplot needs a single scalar to
associate with the x-axis.
Streamlines can now write out fields of any type, not just scalars and
vectors, and there is no longer a strict requirement for velocity to be
one of the fields.
Streamlines now output to postProcessing/<functionName>/time/<file> in
the same way as other functions. The additional "sets" subdirectory has
been removed.
The raw set writer now aligns columns correctly.
The handling of segments in coordSet and sampledSet has been
fixed/completed. Segments mean that a coordinate set can represent a
number of contiguous lines, disconnected points, or some combination
thereof. This works in parallel; segments remain contiguous across
processor boundaries. Set writers now only need one write method, as the
previous "writeTracks" functionality is now handled by streamlines
providing the writer with the appropriate segment structure.
Coordinate sets and set writers now have a convenient programmatic
interface. To write a graph of A and B against some coordinate X, in
gnuplot format, we can call the following:
setWriter::New("gnuplot")->write
(
directoryName,
graphName,
coordSet(true, "X", X), // <-- "true" indicates a contiguous
"A", // line, "false" would mean
A, // disconnected points
"B",
B
);
This write function is variadic. It supports any number of
field-name-field pairs, and they can be of any primitive type.
Support for Jplot and Xmgrace formats has been removed. Raw, CSV,
Gnuplot, VTK and Ensight formats are all still available.
The old "graph" functionality has been removed from the code, with the
exception of the randomProcesses library and associated applications
(noise, DNSFoam and boxTurb). The intention is that these should also
eventually be converted to use the setWriters. For now, so that it is
clear that the "graph" functionality is not to be used elsewhere, it has
been moved into a subdirectory of the randomProcesses library.
replacing the virtual functions overridden in engineTime.
Now the userTime conversion function in Time is specified in system/controlDict
such that the solver as well as all pre- and post-processing tools also operate
correctly with the chosen user-time.
For example the user-time and rpm in the tutorials/combustion/XiEngineFoam/kivaTest case are
now specified in system/controlDict:
userTime
{
type engine;
rpm 1500;
}
The default specification is real-time:
userTime
{
type real;
}
but this entry can be omitted as the real-time class is instantiated
automatically if the userTime entry is not present in system/controlDict.
The writer class has been renamed setWriter in order to clarify its
usage. The coordSet and setWriter classes have been moved into the
sampling library, as this fits their usage.
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor. Processor directories are named 'processorN',
where N is the processor number.
This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor. The files are stored in a single
directory named 'processors'.
The new format produces significantly fewer files - one per field, instead of N
per field. For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.
The file writing can be threaded allowing the simulation to continue running
while the data is being written to file. NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".
The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:
OptimisationSwitches
{
...
//- Parallel IO file handler
// uncollated (default), collated or masterUncollated
fileHandler uncollated;
//- collated: thread buffer size for queued file writes.
// If set to 0 or not sufficient for the file size threading is not used.
// Default: 2e9
maxThreadFileBufferSize 2e9;
//- masterUncollated: non-blocking buffer size.
// If the file exceeds this buffer size scheduled transfer is used.
// Default: 2e9
maxMasterFileBufferSize 2e9;
}
When using the collated file handling, memory is allocated for the data in the
thread. maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated. If the data exceeds this size, the write does not use threading.
When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer. If the
data exceeds this size, the system uses scheduled communication.
The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters. Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.
A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated
An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling
The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
- the checking for point-connected multiple-regions now also writes the
conflicting points to a pointSet
- with the -writeSets option it now also reconstructs & writes pointSets
In parallel the sets are reconstructed. e.g.
mpirun -np 6 checkMesh -parallel -allGeometry -allTopology -writeSets vtk
will create a postProcessing/ folder with the vtk files of the
(reconstructed) faceSets and cellSets.
Also improved analysis of disconnected regions now also checks for point
connectivity with is useful for detecting if AMI regions have duplicate
points.
Patch contributed by Mattijs Janssens
