used to check the existence of and open an object file, read and check the
header without constructing the object.
'typeIOobject' operates in an equivalent and consistent manner to 'regIOobject'
but the type information is provided by the template argument rather than via
virtual functions for which the derived object would need to be constructed,
which is the case for 'regIOobject'.
'typeIOobject' replaces the previous separate functions 'typeHeaderOk' and
'typeFilePath' with a single consistent interface.
setTimeStep is now compatible with a 'writeControl adjustableRunTime;'
setting in the systemControlDict. If 'adjustableRunTime' is selected
then the time-step values set by this function object will not be
exactly as specified, but write intervals will be matched exactly.
All function object time adjustment is now done during the execute
methods, so the specific setTimeStep hooks have been removed.
All function objects now re-read as a result of run-time modifications
to the system/controlDict.
Function objects that write log files (via the logFiles class) will now
generate a new postProcessing/<funcName>/<time> directory as a result of
either restart or run-time modification. Log files will therefore never
be overwritten by restart or run-time modification, except for when a
case is restarted at the same time as a previous execution (e.g.,
repeated runs at the start time).
Description
Updates the writeInterval as a Function1 of time.
Examples of function object specification:
\verbatim
setWriteInterval
{
type setWriteInterval;
libs ("libutilityFunctionObjects.so");
writeInterval table
(
(0 0.005)
(0.1 0.005)
(0.1001 0.01)
(0.2 0.01)
(0.2001 0.02)
);
}
\endverbatim
will cause results to be written every 0.005s between 0 and 0.1s, every
0.01s between 0.1 and 0.2s and every 0.02s thereafter.
This avoids attempting to write temporary fields before they have been created.
The executeAtStart can be set to 'yes' in the writeObjects dictionary or the
functions
{
#includeFunc writeObjects(executeAtStart = yes, <field1>, <field2>...)
}
This is a slight modification of the previous commit. All cached
temporary fields are now written to disk with the name enclosed by
"tmp<...>". This still allows for automatically constructed
field names to be read by paraFoam and other post-processing tools. It
also creates a consistent convention for naming all cached temporary
fields that are written to disk.
for example
cacheTemporaryObjects
(
"((1|((1|(1|A(U)))-H(1)))-(1|A(U)))"
);
functions
{
#includeFunc writeObjects(regExp=off, "((1|((1|(1|A(U)))-H(1)))-(1|A(U)))")
}
writes the temporary field with the name
"expr((1|((1|(1|A(U)))-H(1)))-(1|A(U)))" so that it can be read by paraFoam and
other post-processing tools.
Description
Stops the run when the specified clock time in second has been reached
and optionally write results before stopping.
The following actions are supported:
- noWriteNow
- writeNow
- nextWrite (default)
Examples of function object specification:
\verbatim
stop
{
type stopAtClockTime;
libs ("libutilityFunctionObjects.so");
stopTime 10;
action writeNow;
}
\endverbatim
will stop the run at the next write after the file "stop" is created in the
case directory.
Usage
\table
Property | Description | Required | Default value
type | type name: stopAtClockTime | yes |
stopTime | Maximum elapsed time [s] | yes |
action | Action executed | no | nextWrite
\endtable
By default the case stops following the next write but stopping immediately with
or without writing are also options.
The stopAtFile functionObject derived from stopAt stops the run when a file
predefined file is created in the case directory:
Description
Stops the run when the specified file is created in the case directory.
The default name of the trigger file is \c $FOAM_CASE/<name> where \c
<name> is the name of the functionObject entry and the default action is \c
nextWrite.
Currently the following action types are supported:
- noWriteNow
- writeNow
- nextWrite
Examples of function object specification:
\verbatim
stop
{
type stopAtFile;
libs ("libutilityFunctionObjects.so");
}
\endverbatim
will stop the run at the next write after the file "stop" is created in the
case directory.
\verbatim
stop
{
type stopAtFile;
libs ("libutilityFunctionObjects.so");
file "$FOAM_CASE/stop";
action writeNow;
}
\endverbatim
will write the fields and stop the run when the file "stop" is created in
the case directory.
Usage
\table
Property | Description | Required | Default value
type | type name: stopAtFile | yes |
file | Trigger file path name | no | $FOAM_CASE/<name>
action | Action executed | no | nextWrite
\endtable
For example in the new tutorial case:
tutorials/incompressible/pimpleFoam/laminar/pitzDailyPulse
a cosine bell velocity pulse is specified at the inlet by directly defining the
code for it:
inlet
{
type uniformFixedValue;
uniformValue coded;
name pulse;
codeInclude
#{
#include "mathematicalConstants.H"
#};
code
#{
return vector
(
0.5*(1 - cos(constant::mathematical::twoPi*min(x/0.3, 1))),
0,
0
);
#};
}
which is then compiled automatically and linked into the running pimpleFoam
dynamically and executed to set the inlet velocity.
Rather than being tied to the Time class the dlLibraryTable libs is now a global
variable in the Foam namespace which is accessable by any class needing to load
dynamic libraries, in particular argList, Time and codeStream.
When selecting fields with complex automatically generated names it is
cumbersome to escape all the regular expression meta characters and more
convenient to specify the name as a literal string, the new regExp option
provides the ability to switch the regular expression support and defaults to
true for backward compatibility.
For example to cache and write out an intermediate temporary field generated by
the kOmegaSST model:
cacheTemporaryObjects
(
"((interpolate(((1|((1|(1|A(U)))-H(1)))-(1|A(U))))*snGrad(p))*magSf)"
);
functions
{
#includeFunc writeObjects(regExp=off, "((interpolate(((1|((1|(1|A(U)))-H(1)))-(1|A(U))))*snGrad(p))*magSf)")
}
The regExp option can also be specified in a writeObjects dict as
regExp off;
Additionally regular expression support has been added to the includeFunc
argument parsing.
Function1 has been generalised in order to provide functionality
previously provided by some near-duplicate pieces of code.
The interpolationTable and tableReader classes have been removed and
their usage cases replaced by Function1. The interfaces to Function1,
Table and TableFile has been improved for the purpose of using it
internally; i.e., without user input.
Some boundary conditions, fvOptions and function objects which
previously used interpolationTable or other low-level interpolation
classes directly have been changed to use Function1 instead. These
changes may not be backwards compatible. See header documentation for
details.
In addition, the timeVaryingUniformFixedValue boundary condition has
been removed as its functionality is duplicated entirely by
uniformFixedValuePointPatchField.
Currently these deleted function declarations are still in the private section
of the class declarations but will be moved by hand to the public section over
time as this is too complex to automate reliably.
The dynamic code functionality has been generalised so that the names of
the code entries in the specifying dictionary can be set by the caller.
This means that functions which utilise dynamic code but use different
entry names (e.g., codedFunctionObject uses codeExecute, codeEnd,
etc..., instead of code) now function correctly. The differently named
entries now form part of the library hash, and re-building triggers
appropriately as they are modified.
The logic governing function objects' ability to change the time-step
has been modified so that it is compatible with the time-step adjustment
done in the Time class. The behaviour has been split into a method which
sets the step directly, and another which moidifies the time until the
next write operation (i.e., the time that the solver "aims" for).
This fixes an issue where the adjustments in Time and the function
objects interfere and cause the time step to decrease exponentially down
to machine precision. It also means that the set-time-step function
object now does not break the adjustable run-time setting.
This resolves bug report https://bugs.openfoam.org/view.php?id=2820
and optionally the CPU and clock times per time step.
Example of function object specification:
time
{
type time;
libs ("libutilityFunctionObjects.so");
writeControl timeStep;
writeInterval 1;
perTimeStep no;
}
Adding
#includeFunc time
to the functions list in the controlDict of the motorBike tutorial generates
0 1.190000e+00 1
1 1.640000e+00 1
2 1.940000e+00 2
Enabling the optional writing of the CPU and clock time per time step is
straight forward:
#includeFunc time(perTimeStep=yes)
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor. Processor directories are named 'processorN',
where N is the processor number.
This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor. The files are stored in a single
directory named 'processors'.
The new format produces significantly fewer files - one per field, instead of N
per field. For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.
The file writing can be threaded allowing the simulation to continue running
while the data is being written to file. NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".
The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:
OptimisationSwitches
{
...
//- Parallel IO file handler
// uncollated (default), collated or masterUncollated
fileHandler uncollated;
//- collated: thread buffer size for queued file writes.
// If set to 0 or not sufficient for the file size threading is not used.
// Default: 2e9
maxThreadFileBufferSize 2e9;
//- masterUncollated: non-blocking buffer size.
// If the file exceeds this buffer size scheduled transfer is used.
// Default: 2e9
maxMasterFileBufferSize 2e9;
}
When using the collated file handling, memory is allocated for the data in the
thread. maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated. If the data exceeds this size, the write does not use threading.
When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer. If the
data exceeds this size, the system uses scheduled communication.
The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters. Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.
A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated
An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling
The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
e.g. in tutorials/heatTransfer/buoyantSimpleFoam/externalCoupledCavity/0/T
hot
{
type externalCoupledTemperature;
commsDir "${FOAM_CASE}/comms";
file "data";
initByExternal yes;
log true;
value uniform 307.75; // 34.6 degC
}
Previously both 'file' and 'fileName' were used inconsistently in different
classes and given that there is no confusion or ambiguity introduced by using
the simpler 'file' rather than 'fileName' this change simplifies the use and
maintenance of OpenFOAM.
