Commit Graph

417 Commits

Author SHA1 Message Date
a1eb8898d6 tutorials: Moved the functions entry from controlDict into a functions file 2024-01-20 23:43:10 +00:00
ddeaa566ef coded: Permit both untyped and typed substitutions
Coded functionality now supports basic un-typed substitutions from the
surrounding dictionary. For example:

    value 1.2345;

    #codeExecute
    {
        scalar s = $value;
        ...
    };

It also now supports the more functional typed substitutions, such as:

    direction (1 0 0);

    #codeExecute
    {
        vector v = $<vector>direction;
        ...
    };

These substitutions are now possible in all code blocks. Blocks with
access to the dictionary (e.g., #codeRead) will do a lookup which will
not require re-compilation if the value is changed. Blocks without
access to the dictionary will have the value directly substituted, and
will require recompilation when the value is changed.
2024-01-10 15:41:57 +00:00
20f5235ecf Renamed ID() -> Index()
Index is a better name to describe a label index than ID which may be an
integer, word or other means of identification.
2023-12-20 18:39:55 +00:00
a99155d0f0 Renamed IDs() -> Indices()
Indices is a better name to describe label indices than IDs which may be an
integers, words or other means of identification.
2023-12-20 14:29:23 +00:00
621740e90b polyBoundaryMesh::findPatchID,findPatchIDs: renamed findIndex,findIndices
Index is a better name to describe a label index than ID which may be an
integer, word or other means of identification.
2023-12-16 13:27:12 +00:00
cad6a99777 Merge branch 'master' of github.com-OpenFOAM:OpenFOAM/OpenFOAM-dev 2023-12-15 22:27:11 +00:00
77f0b172a9 MeshZones: Renamed findZoneID -> findIndex
Index is a better name to describe a label index than ID which may be an
integer, word or other means of identification.
2023-12-15 22:25:02 +00:00
eb8e221f15 functionObjects::layerAverage: Volume averaging, and weight fields
This function has been changed to volume average, making it appropriate
to use on layered meshes in which the cells have non-uniform geometry
within their layers. A 'weightFields' (or 'weightField') control has
also been added, so that mass or phase weighted averages can be
performed within the layers.
2023-12-15 14:51:28 +00:00
5cf2109eff functionObjects::histogram: Corrected data file header
Resolves bug report https://bugs.openfoam.org/view.php?id=4041
2023-12-15 11:28:27 +00:00
2bc91ecff0 phaseScalarTransport: Improved interface and documentation
This function now looks up an alphaPhi field by default and exits with
an error if the field cannot be found. In order to solve for alphaPhi a
new 'solveAlphaPhi' switch has to be set.

The documentation has been updated to reflect the fact that the VoF
solvers now store all the alphaPhi fluxes necessary for a in-phase
equation to be constructed.

The phaseScalarTransport function has been added to the damBreakLaminar
tutorial.
2023-12-06 12:54:33 +00:00
abe43a9532 thermo: Standardise property names and remove molar functions
All property functions in the low-level templated thermo property
implementations and the high-level virtual interfaces have been made
consistent. All energies and enthalpies are lower case to denote that
they are specific quantities. Molar functions have been removed as these
are no longer used anywhere.
2023-12-01 17:11:59 +00:00
06ecc011b3 functionObjects::checkMesh: Added stopAt option
Description
    Executes primitiveMesh::checkMesh(true) every execute time for which the
    mesh changed, i.e. moved or changed topology.

    Useful to check the correctness of changing and morphing meshes.

Usage
    \table
        Property      | Description               | Required     | Default value
        type          | type name: checkMesh      | yes          |
        noTopology    | Skip checking the mesh topology | no     | false
        allTopology   | Check all addressing      | no           | false
        allGeometry   | Check all geometry        | no           | false
        writeSurfaces | Reconstruct and write problem faces | no | false
        surfaceFormat | Format for problem faceSets | no         | vtk
        writeSets     | Reconstruct and write problem points | no | false
        setFormat     | Format used to write the problem pointSets | no | vtk
        nonOrthThreshold | Threshold for non-orthogonality errors | no | 70 deg
        skewThreshold | Threshold for reporting skewness errors | no | 4
        stopAt        | Stops the run if any mesh checks fail   | no | endTime
    \endtable

    The optional \c stopAt option may be set to
    - endTime     : Continue running on error
    - noWriteNow  : Stops the run on error without write
    - writeNow    : Stops the run on error and writes fields
    - nextWrite   : Stops the run at the next write time on error

    Example of checkMesh specification:
    \verbatim
    checkMesh
    {
        type            checkMesh;
        libs            ("libutilityFunctionObjects.so");

        executeControl  timeStep;
        executeInterval 10;

        allGeometry     true;
        allTopology     true;

        writeSurfaces   true;
        surfaceFormat   vtk;

        writeSets       true;
        setFormat       vtk;

        stopAt          writeNow;
    }
    \endverbatim

    or using the standard configuration file:

    \verbatim
    #includeFunc checkMesh(executeInterval=10, allGeometry=true)
    \endverbatim
2023-11-29 18:12:05 +00:00
b6d1d308d6 porosityModel, sampledIsoSurfaceSurface: Removed unused multi cellZone support
This reduces the code complexity and allows for a future plan to make zones
dynamic rather than a static fixed indexed list.
2023-11-08 14:37:29 +00:00
4ab9979305 checkMesh, functionObjects::checkMesh: Updated and made consistent
Now both the checkMesh utility and functionObject operate in the same manner
with the same controls, executing the same checkGeometry and checkTopology
functions from the new meshCheck library.  The controls have been updated and
made more consistent and flexible, in particular by the addition of optional
user specification for the non-orthogonality and skewness error thresholds:

Application
    checkMesh

Description
    Checks validity of a mesh.

Usage
    \b checkMesh [OPTION]

    Options:
      - \par noTopology
        Skip checking the mesh topology

      - \par -allTopology
        Check all (including non finite-volume specific) addressing

      - \par -allGeometry
        Check all (including non finite-volume specific) geometry

      - \par -meshQuality
        Check against user defined (in \a system/meshQualityDict) quality
        settings

      - \par -region \<name\>
        Specify an alternative mesh region.

      - \par -writeSurfaces
        Reconstruct cellSets and faceSets of problem faces and write to
        postProcessing directory.

      - \par -surfaceFormat <format>
        Format used to write the cellSets and faceSets surfaces
        e.g. vtk or ensight.

      - \par -writeSets
        Reconstruct pointSets of problem points nd write to
        postProcessing directory.

      - \par -setFormat <format>
        Format used to write the pointSets
        e.g. vtk or ensight.

      - \par -nonOrthThreshold <threshold value in degrees>
        Threshold in degrees for reporting non-orthogonality errors,
        default: 70"

      - \par -skewThreshold <threshold value>
        Threshold for reporting skewness errors, default: 4.

Class
    Foam::functionObjects::checkMesh

Description
    Executes primitiveMesh::checkMesh(true) every execute time for which the
    mesh changed, i.e. moved or changed topology.

    Useful to check the correctness of changing and morphing meshes.

Usage
    \table
        Property      | Description               | Required     | Default value
        type          | type name: checkMesh      | yes          |
        noTopology    | Skip checking the mesh topology | no     | false
        allTopology   | Check all addressing      | no           | false
        allGeometry   | Check all geometry        | no           | false
        writeSurfaces | Reconstruct and write problem faces | no | false
        surfaceFormat | Format for problem faceSets | no         | vtk
        writeSets     | Reconstruct and write problem points | no | false
        setFormat     | Format used to write the problem pointSets | no | vtk
        nonOrthThreshold | Threshold for non-orthogonality errors | no | 70 deg
        skewThreshold | Threshold for reporting skewness errors | no | 4
    \endtable

    Example of checkMesh specification:
    \verbatim
    checkMesh
    {
        type            checkMesh;
        libs            ("libutilityFunctionObjects.so");

        executeControl  timeStep;
        executeInterval 10;

        allGeometry     true;
        allTopology     true;

        writeSurfaces   true;
        surfaceFormat   vtk;

        writeSets       true;
        setFormat       vtk;
    }
    \endverbatim

    or using the standard configuration file:

    \verbatim
    #includeFunc checkMesh(executeInterval=10, allGeometry=true)
    \endverbatim
2023-10-24 14:36:35 +01:00
6628666770 dynamicMeshCheck merged into meshCheck 2023-10-20 17:46:04 +01:00
096200c6b6 primitiveMeshCheck, polyMeshCheck: Moved to meshCheck library 2023-10-19 18:19:38 +01:00
46f829761a Renamed namespace polyMeshCheck -> meshCheck
This namespace is to be used for both primitiveMesh, polyMesh and fvMesh
checking functions.
2023-10-18 12:39:04 +01:00
76afad69ba functionObjects: Updated remaining outputTime -> writeTime 2023-09-22 11:11:55 +01:00
e5cf0cf4ed Cloud: Accumulate warning messages associated with location failures
Warnings about initialisation of particles with locations outside of the
mesh and about the positional inaccuracy of NCC transfers are now
accumulated and printed once per time-step. This way, the log isn't
obscured by hundreds of such warnings.

Also, the pattern in which warnings are silenced after some arbitrary
number (typically 100) have been issued has been removed. This pattern
means that user viewing the log later in the run may be unaware that a
problem is still present. Accumulated warnings are concise enough that
they do not need to be silenced. They are generated every time-step, and
so remain visible throughout the log.
2023-09-19 10:57:11 +01:00
597121a4a7 multiphaseEuler: Library reorganisation
This change makes multiphaseEuler more consistent with other modules and
makes its sub-libraries less inter-dependent. Some left-over references
to multiphaseEulerFoam have also been removed.
2023-09-15 14:45:26 +01:00
3e7ebe0491 functionObjects::/systemCall: Added optional parallel switch to execute on all processors
When the parallel switch is set false (the default), the system call is executed
only on the master processor, if true it is executed on all processors.

Patch contributed by Stanislau Stasheuski, Aalto University.
2023-09-14 13:44:13 +01:00
3650675a52 fieldsExpression: Added missing documentation 2023-09-06 11:14:55 +01:00
58f82fccbd functionObjects::volFieldValue: Filter processors without zone cells for max/min
Resolves bug-report https://bugs.openfoam.org/view.php?id=4014
2023-09-04 11:57:27 +01:00
dd53598fa2 functionObjects::wallHeatFlux: Improved the diagnostic message 2023-07-24 10:09:14 +01:00
2779442d2a functionObjects::fluidMaxDeltaT: New functionObject to set the maximum Courant number and time-step
at Function1s of time.

Underlying this new functionObject is a generalisation of the handling of the
maximum time-step in the modular solvers to allow complex user-specification of
the maximum time-step used in a simulation, not just the time-dependency
provided by fluidMaxDeltaT but functions of anything in the simulation by
creating a specialised functionObject in which the maxDeltaT function is
defined.

The chemical and combustion time-scale functionObjects adjustTimeStepToChemistry
and adjustTimeStepToCombustion have been updated and simplified using the above
mechanism.
2023-07-20 14:37:18 +01:00
730f7f371a functionObjects::fieldExpression: Read the log and executeAtStart options 2023-07-17 15:12:52 +01:00
2b3b820c90 Corrected duplicate word and it's typos 2023-07-11 11:02:47 +01:00
bcc5169ddc fvMesh: Added meshPhi to the geometricFields set
Also provide fields and curFields functions which return the list of registered
fields not including the geometryFields and current registered fields not
including the geometryFields or old-time fields to simplify mapping code for
NCC, mesh-to-mesh mapping and load-balancing.
2023-06-28 11:53:14 +01:00
e019049bef primitiveMesh,polyMesh: Further refactoring of mesh checking 2023-06-23 13:44:35 +01:00
4c62933e7f surfaceFieldValue: Removed sumDirection and sumDirectionBalance operations
The purpose of these operations was unclear, and there was no
documentation or examples of their usage. The differences between these
operations behaviours for scalar and vector input seemed arbitrary.
These operations have in some cases become the subject of confusion.
They have therefore been removed.

Equivalent functionality could be easily reinstated as and when a clear
need and application becomes apparent.
2023-06-22 15:42:18 +01:00
0927fd47fa stringOps: Rationalisation of expansions
Specific names have been given for expand functions. Unused functions
have been removed, and functions only used locally have been removed
from the namespace. Documentation has been corrected. Default and
alternative value handling has been removed from code template
expansion.
2023-06-22 11:46:23 +01:00
04dd989911 Time: Removed graphFormat
setFormat no longer defaults to the value of graphFormat optionally set in
controlDict and must be set in the functionObject dictionary.

boundaryFoam, financialFoam and pdfPlot still require a graphFormat entry in
controlDict but this is now read directly rather than by Time.
2023-06-16 14:51:30 +01:00
618d9d33b2 controlDict: the optional graphFormat entry is now used as the default for all setFormat entries
Foam::graph superseded by the more general Foam::setWriter reducing code
maintenance overhead, simplifying usage and further development.
2023-06-12 17:14:37 +01:00
36e8344429 functionObjects::checkMesh: New functionObject to check mesh changes
Class
    Foam::functionObjects::checkMesh

Description
    Executes primitiveMesh::checkMesh(true) every execute time for which the
    mesh changed, i.e. moved or changed topology.

    Useful to check the correctness of changing and morphing meshes.

    Example of checkMesh specification:
    \verbatim
    checkMesh
    {
        type            checkMesh;
        libs            ("libutilityFunctionObjects.so");

        executeControl  timeStep;
        executeInterval 10;
    }
    \endverbatim
    or using the standard configuration file:
    \verbatim
    #includeFunc checkMesh(executeInterval=10)
    \endverbatim

Can be used with any solver supporting mesh-motion, in particular the movingMesh
solver module, to check the mesh quality following morphing and/or topology
change.
2023-06-06 18:36:46 +01:00
1d78434bee functionObjects::interfaceHeight: Corrected parallel operation 2023-05-31 11:51:38 +01:00
ca72b0a963 fvPatchFields: Removed all fvPatchFields requiring user specified data from the null-constructor table
This avoids potential hidden run-time errors caused by solvers running with
boundary conditions which are not fully specified.  Note that "null-constructor"
here means the constructor from patch and internal field only, no data is
provided.

Constraint and simple BCs such as 'calculated', 'zeroGradient' and others which
do not require user input to fully specify their operation remain on the
null-constructor table for the construction of fields with for example all
'calculated' or all 'zeroGradient' BCs.

A special version of the 'inletOutlet' fvPatchField named 'zeroInletOutlet' has
been added in which the inlet value is hard-coded to zero which allows this BC
to be included on the null-constructor table.  This is useful for the 'age'
functionObject to avoid the need to provide the 'age' volScalarField at time 0
unless special inlet or outlet BCs are required.  Also for isothermalFilm in
which the 'alpha' field is created automatically from the 'delta' field if it is
not present and can inherit 'zeroInletOutlet' from 'delta' if appropriate.  If a
specific 'inletValue' is require or other more complex BCs then the 'alpha'
field file must be provided to specify these BCs as before.

Following this improvement it will now be possible to remove the
null-constructors from all fvPatchFields not added to the null-constructor
table, which is most of them, thus reducing the amount of code and maintenance
overhead and making easier and more obvious to write new fvPatchField types.
2023-05-27 16:56:10 +01:00
fec6705dc9 OpenFOAM: Updated for gcc-13
gcc-13 has new code checking and warning mechanisms which are useful but not
entirely robust and produce many false positives, particularly with respect to
local references:

    warning: possibly dangling reference to a temporary

This commit resolves many of the new warning messages but the above false
warnings remain.  It is possible to switch off this warning but as it also
provides some useful checks it is currently left on.
2023-05-23 10:47:56 +01:00
4974cc2e1d functionObjects::stopAtTimeStep: New functionObject to stop the run if the time-step becomes too small
This is useful to write results before a case fails due to uncontrollable
automatic time-step reduction, usually caused by unstable pressure-velocity
coupling.

Class
    Foam::functionObjects::stopAtTimeStep

Description
    Stops the run if the time-step drops below the specified value in seconds
    and optionally write results before stopping.

    The following actions are supported:
    - noWriteNow
    - writeNow (default)
    - nextWrite

    Examples of function object specification:
    \verbatim
    stop
    {
        type            stopAtTimeStep;

        libs            ("libutilityFunctionObjects.so");

        minDeltaT       1e-8;
        action          writeNow;
    }
    \endverbatim
    will write the fields and stop if the time-step drops below 1e-8s.

Usage
    \table
        Property  | Description               | Required | Default value
        type      | type name: stopAtTimeStep | yes      |
        minDeltaT | Minimum time-step [s]     | yes      |
        action    | Action executed           | no       | writeNow
    \endtable
2023-04-13 13:01:42 +01:00
496850ebb2 functionObjects::fieldValues::volFieldValue: Added support for VolInternalField
It is now possible to calculate field values of VolInternalFields, e.g. the
cached kEpsilon:G field in the
tutorials/modules/incompressibleFluid/pitzDailySteady case:

    #includeFunc cellMax(kEpsilon:G)
2023-03-15 13:59:29 +00:00
a535ff7c9a codedFunctionObject: Read executeAtStart control 2023-02-22 12:03:02 +00:00
e6b517a1e3 functionObjects: uniform, fieldsExpression: Support for dimensioned fields 2023-02-21 12:55:16 +00:00
c8f177e453 streamlines: Protected operation agaist no streamlines being generated 2023-02-16 11:12:36 +00:00
69dbca58fb Moved src/functionObjects/lagrangian -> src/lagrangian/functionObjects
to localise Lagrangian functionality
2023-02-04 10:50:39 +00:00
e2c160462e functionObjects::volRegion: Replaced with fvCellSet
Replacing volRegion removes unnecessary functionality duplication and ensures
cell set selection is consistent between functionObjects, fvModels and
fvConstraints for user convenience and reducing the code maintenance overhead.

Description
    General cell set selection class for models that apply to sub-sets
    of the mesh.

    Currently supports cell selection from a set of points, a specified cellSet
    or cellZone or all of the cells.  The selection method can either be
    specified explicitly using the \c select entry or inferred from the
    presence of either a \c cellSet, \c cellZone or \c points entry.  The \c
    select entry is required to select \c all cells.

Usage
    Examples:
    \verbatim
        // Apply everywhere
        select   all;

        // Apply within a given cellSet
        select   cellSet; // Optional
        cellSet         rotor;

        // Apply within a given cellZone
        select   cellZone; // Optional
        cellZone        rotor;

        // Apply in cells containing a list of points
        select   points; // Optional
        points
        (
            (2.25 0.5 0)
            (2.75 0.5 0)
        );
    \endverbatim
2023-02-03 19:16:32 +00:00
4dbc23c141 ListOps::identity -> identityMap
to avoid confusion with the tensor identity.
2023-02-03 17:12:31 +00:00
295223624b Rationalised and standardised cell, face and point set selection controls
The keyword 'select' is now used to specify the cell, face or point set
selection method consistently across all classes requiring this functionality.

'select' replaces the inconsistently named 'regionType' and 'selectionMode'
keywords used previously but backwards-compatibility is provided for user
convenience.  All configuration files and tutorials have been updated.

Examples of 'select' from the tutorial cases:

functionObjects:

    cellZoneAverage
    {
        type            volFieldValue;
        libs            ("libfieldFunctionObjects.so");

        writeControl    writeTime;
        writeInterval   1;

        fields          (p);
        select          cellZone;
        cellZone        injection;

        operation       volAverage;
        writeFields     false;
    }

    #includeFunc populationBalanceSizeDistribution
    (
        name=numberDensity,
        populationBalance=aggregates,
        select=cellZone,
        cellZone=outlet,
        functionType=numberDensity,
        coordinateType=projectedAreaDiameter,
        allCoordinates=yes,
        normalise=yes,
        logTransform=yes
    )

fvModel:

    cylinderHeat
    {
        type            heatSource;

        select          all;

        q               5e7;
    }

fvConstraint:

    momentumForce
    {
        type            meanVelocityForce;

        select          all;

        Ubar            (0.1335 0 0);
    }
2023-02-01 16:17:16 +00:00
574165dc13 functionObjects: Replaced 'name' with 'patch', 'faceZone' or 'cellZone' as appropriate
for consistency with the rest of OpenFOAM and to allow 'name' to be used as the
keyword to name the functionObject.
2023-02-01 11:54:36 +00:00
5d55e0483d functionObjects::phaseScalarTransport: Corrected member data documentation 2023-01-28 10:15:15 +00:00
2da6c4cc62 functionObjects::scalarTransport: diffusion -> diffusivity
It in more logical to name the diffusivity entry, types and variables
"diffusivity" rather than "diffusion".
2023-01-27 14:49:01 +00:00
8de6cd744e solvers::functions: New solver module to execute functionObjects in a time-loop
Description
    Solver module to execute the \c functionObjects for a specified solver

    The solver specified by either the \c subSolver or if not present the \c
    solver entry in the \c controlDict is instantiated to provide the physical
    fields needed by the \c functionObjects.  The \c functionObjects are then
    instantiated from the specifications are read from the \c functions entry in
    the \c controlDict and executed in a time-loop also controlled by entries in
    \c controlDict and the \c maxDeltaT() returned by the sub-solver.

    The fields and other objects registered by the sub-solver are set to
    NO_WRITE as they are not changed by the execution of the functionObjects and
    should not be written out each write-time.  Fields and other objects created
    and changed by the execution of the functionObjects are written out.

solvers::functions in conjunction with the scalarTransport functionObject
replaces scalarTransportFoam and provide more general handling of the scalar
diffusivity.
2023-01-27 14:31:58 +00:00