This makes usage of transformPoints the same as for
surfaceTransformPoints. Transformations are supplied as a string and are
applied in sequence.
Usage
transformPoints "\<transformations\>" [OPTION]
Supported transformations:
- "translate=<translation vector>"
Translational transformation by given vector
- "rotate=(<n1 vector> <n2 vector>)"
Rotational transformation from unit vector n1 to n2
- "Rx=<angle [deg] about x-axis>"
Rotational transformation by given angle about x-axis
- "Ry=<angle [deg] about y-axis>"
Rotational transformation by given angle about y-axis
- "Rz=<angle [deg] about z-axis>"
Rotational transformation by given angle about z-axis
- "Ra=<axis vector> <angle [deg] about axis>"
Rotational transformation by given angle about given axis
- "scale=<x-y-z scaling vector>"
Anisotropic scaling by the given vector in the x, y, z
coordinate directions
Example usage:
transformPoints \
"translate=(-0.05 -0.05 0), \
Rz=45, \
translate=(0.05 0.05 0)"
Description
Transform (translate, rotate, scale) a surface.
Usage
\b surfaceTransformPoints "\<transformations\>" \<input\> \<output\>
Supported transformations:
- \par translate=<translation vector>
Translational transformation by given vector
- \par rotate=(\<n1 vector\> \<n2 vector\>)
Rotational transformation from unit vector n1 to n2
- \par Rx=\<angle [deg] about x-axis\>
Rotational transformation by given angle about x-axis
- \par Ry=\<angle [deg] about y-axis\>
Rotational transformation by given angle about y-axis
- \par Rz=\<angle [deg] about z-axis\>
Rotational transformation by given angle about z-axis
- \par Ra=\<axis vector\> \<angle [deg] about axis\>
Rotational transformation by given angle about given axis
- \par scale=\<x-y-z scaling vector\>
Anisotropic scaling by the given vector in the x, y, z
coordinate directions
Example usage:
surfaceTransformPoints \
"translate=(-0.586 0 -0.156), \
Ry=3.485, \
translate=(0.586 0 0.156)" \
constant/geometry/w3_orig.stl constant/geometry/w3.stl
The transformation sequence is specified like a substitution string used by
Description
Transform (translate, rotate, scale) a surface.
The rollPitchYaw option takes three angles (degrees):
- roll (rotation about x) followed by
- pitch (rotation about y) followed by
- yaw (rotation about z)
The yawPitchRoll does yaw followed by pitch followed by roll.
Usage
\b surfaceTransformPoints "\<transformations\>" \<input\> \<output\>
Example usage:
surfaceTransformPoints \
"translate=(-0.586 0 -0.156), \
rollPitchYaw=(0 -3.485 0), \
translate=(0.586 0 0.156)" \
constant/geometry/w3_orig.stl constant/geometry/w3.stl
Specifying a plane with which to subset feature edges is now done using
the same dictionary syntax used elsewhere in OpenFOAM. For example, in
system/surfaceFeaturesDict:
subsetFeatures
{
// Include only edges that intersect the plane
plane
{
planeType pointAndNormal;
point (0 0 0);
normal (1 0 0);
}
...
}
Originally the only supported geometry specification were triangulated surfaces,
hence the name of the directory: constant/triSurface, however now that other
surface specifications are supported and provided it is much more logical that
the directory is named accordingly: constant/geometry. All tutorial and
template cases have been updated.
Note that backward compatibility is provided such that if the constant/geometry
directory does not exist but constant/triSurface does then the geometry files
are read from there.
To handle the additional optional specification for the closeness calculation
these settings are now is a sub-dictionary of surfaceFeaturesDict, e.g.
closeness
{
// Output the closeness of surface elements to other surface elements.
faceCloseness no;
// Output the closeness of surface points to other surface elements.
pointCloseness yes;
// Optional maximum angle between opposite points considered close
internalAngleTolerance 80;
externalAngleTolerance 80;
}
For many information and diagnostic messages the absolute path of the object is
not required and the local path relative to the current case is sufficient; the
new localObjectPath() member function of IOobject provides a convenient way of
printing this.
For complex geometries the calculation of surface face and point "closeness" can
be quite time consuming and usually only one or other is required; the new
options allow the user to specify which should be calculated and written.
Replaced all uses of complex Xfer class with C++11 "move" constructors and
assignment operators. Removed the now redundant Xfer class.
This substantial changes improves consistency between OpenFOAM and the C++11 STL
containers and algorithms, reduces memory allocation and copy overhead when
returning containers from functions and simplifies maintenance of the core
libraries significantly.
Tree bound boxes are expanded asymmetrically to reduce the liklihood of
octree faces aliging with mesh faces and edges. The asymmetry is now
generated using hard-coded irrational numbers, rather than using a
random generator.
The asymmetry was effectively already hard coded. The random numbers are
only pseudo random, so the same numbers were being applied to the bound
boxes every time. This change simply removes the overhead of creating
the generator, and also gets rid of some duplicated code.
Surfaces are specified as a list and the controls applied to each, e.g. in the
rhoPimpleFoam/RAS/annularThermalMixer tutorial:
surfaces
(
"AMI.obj"
"shaft.obj"
"wall.obj"
"statorBlades.obj"
"rotorBlades.obj"
);
includedAngle 150; // Identifes a feature when angle
// between faces < includedAngle
trimFeatures
{
minElem 10; // minimum edges within a feature
}
writeObj yes; // writes out _edgeMesh.obj files to view features
If different controls are required for different surfaces multiple
sub-dictionaries can be used:
AMIsurfaces
{
surfaces
(
"AMI.obj"
);
includedAngle 140; // Identifes a feature when angle
// between faces < includedAngle
trimFeatures
{
minElem 8; // minimum edges within a feature
}
writeObj yes; // writes out _edgeMesh.obj files to view features
}
otherSurfaces
{
surfaces
(
"shaft.obj"
"wall.obj"
"statorBlades.obj"
"rotorBlades.obj"
);
includedAngle 150; // Identifes a feature when angle
// between faces < includedAngle
trimFeatures
{
minElem 10; // minimum edges within a feature
}
writeObj yes; // writes out _edgeMesh.obj files to view features
}
Existing feature edge files corresponding to particular surfaces can be specified using
the "files" association list:
surfaces
(
"AMI.obj"
"shaft.obj"
"wall.obj"
"statorBlades.obj"
"rotorBlades.obj"
);
files
(
"AMI.obj" "constant/triSurface/AMI.obj.eMesh";
);
includedAngle 150; // Identifes a feature when angle
// between faces < includedAngle
trimFeatures
{
minElem 10; // minimum edges within a feature
}
writeObj yes; // writes out _edgeMesh.obj files to view features
For compatibility with all the mesh and related classes in OpenFOAM The 'normal'
function of the 'triangle', 'triFace' and 'face' classes now returns the unit
normal vector rather than the vector area which is now provided by the 'area'
function.
In early versions of OpenFOAM the scalar limits were simple macro replacements and the
names were capitalized to indicate this. The scalar limits are now static
constants which is a huge improvement on the use of macros and for consistency
the names have been changed to camel-case to indicate this and improve
readability of the code:
GREAT -> great
ROOTGREAT -> rootGreat
VGREAT -> vGreat
ROOTVGREAT -> rootVGreat
SMALL -> small
ROOTSMALL -> rootSmall
VSMALL -> vSmall
ROOTVSMALL -> rootVSmall
The original capitalized are still currently supported but their use is
deprecated.
First run the surfaceFeatureExtract with the "closeness" option enabled in the
surfaceFeatureExtractDict to extract the surface closeness point field
// Out put the closeness of surface elements to other surface elements.
closeness yes;
Then enable cell sizing based on local surface closeness by specifying the
"internalCloseness" options in the foamyHexMeshDict e.g.
motionControl
{
defaultCellSize 4;
minimumCellSizeCoeff 0.1;
maxSmoothingIterations 100;
maxRefinementIterations 2;
shapeControlFunctions
{
geometry
{
type searchableSurfaceControl;
priority 1;
mode inside;
surfaceCellSizeFunction nonUniformField;
cellSizeCalculationType automatic;
curvature false;
curvatureFile dummy;
featureProximity false;
featureProximityFile dummy;
internalCloseness true;
internalClosenessFile geometry.internalPointCloseness;
internalClosenessCellSizeCoeff 25;
curvatureCellSizeCoeff 0;
maximumCellSizeCoeff 1;
cellSizeFunction uniform;
}
}
}
This generalizes and replaces the previous "noBanner" option provided by argList
and is extended to include the messages printed by Time.
Resolves bug-report https://bugs.openfoam.org/view.php?id=2782
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor. Processor directories are named 'processorN',
where N is the processor number.
This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor. The files are stored in a single
directory named 'processors'.
The new format produces significantly fewer files - one per field, instead of N
per field. For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.
The file writing can be threaded allowing the simulation to continue running
while the data is being written to file. NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".
The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:
OptimisationSwitches
{
...
//- Parallel IO file handler
// uncollated (default), collated or masterUncollated
fileHandler uncollated;
//- collated: thread buffer size for queued file writes.
// If set to 0 or not sufficient for the file size threading is not used.
// Default: 2e9
maxThreadFileBufferSize 2e9;
//- masterUncollated: non-blocking buffer size.
// If the file exceeds this buffer size scheduled transfer is used.
// Default: 2e9
maxMasterFileBufferSize 2e9;
}
When using the collated file handling, memory is allocated for the data in the
thread. maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated. If the data exceeds this size, the write does not use threading.
When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer. If the
data exceeds this size, the system uses scheduled communication.
The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters. Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.
A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated
An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling
The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
