A new constraint patch has been added which permits AMI coupling in
cyclic geometries. The coupling is repeated with different multiples of
the cyclic transformation in order to achieve a full correspondence.
This allows, for example, a cylindrical AMI interface to be used in a
sector of a rotational geometry.
The patch is used in a similar manner to cyclicAMI, except that it has
an additional entry, "transformPatch". This entry must name a coupled
patch. The transformation used to repeat the AMI coupling is taken from
this patch. For example, in system/blockMeshDict:
boundary
(
cyclic1
{
type cyclic;
neighbourPatch cyclic2;
faces ( ... );
}
cyclic2
{
type cyclic;
neighbourPatch cyclic1;
faces ( ... );
}
cyclicRepeatAMI1
{
type cyclicRepeatAMI;
neighbourPatch cyclicRepeatAM2;
transformPatch cyclic1;
faces ( ... );
}
cyclicRepeatAMI2
{
type cyclicRepeatAMI;
neighbourPatch cyclicRepeatAMI1;
transformPatch cyclic1;
faces ( ... );
}
// other patches ...
);
In this example, the transformation between cyclic1 and cyclic2 is used
to define the repetition used by the two cyclicRepeatAMI patches.
Whether cyclic1 or cyclic2 is listed as the transform patch is not
important.
A tutorial, incompressible/pimpleFoam/RAS/impeller, has been added to
demonstrate the functionality. This contains two repeating AMI pairs;
one cylindrical and one planar.
A significant amount of maintenance has been carried out on the AMI and
ACMI patches as part of this work. The AMI methods now return
dimensionless weights by default, which prevents ambiguity over the
units of the weight field during construction. Large amounts of
duplicate code have also been removed by deriving ACMI classes from
their AMI equivalents. The reporting and writing of AMI weights has also
been unified.
This work was supported by Dr Victoria Suponitsky, at General Fusion
In early versions of OpenFOAM the scalar limits were simple macro replacements and the
names were capitalized to indicate this. The scalar limits are now static
constants which is a huge improvement on the use of macros and for consistency
the names have been changed to camel-case to indicate this and improve
readability of the code:
GREAT -> great
ROOTGREAT -> rootGreat
VGREAT -> vGreat
ROOTVGREAT -> rootVGreat
SMALL -> small
ROOTSMALL -> rootSmall
VSMALL -> vSmall
ROOTVSMALL -> rootVSmall
The original capitalized are still currently supported but their use is
deprecated.
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor. Processor directories are named 'processorN',
where N is the processor number.
This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor. The files are stored in a single
directory named 'processors'.
The new format produces significantly fewer files - one per field, instead of N
per field. For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.
The file writing can be threaded allowing the simulation to continue running
while the data is being written to file. NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".
The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:
OptimisationSwitches
{
...
//- Parallel IO file handler
// uncollated (default), collated or masterUncollated
fileHandler uncollated;
//- collated: thread buffer size for queued file writes.
// If set to 0 or not sufficient for the file size threading is not used.
// Default: 2e9
maxThreadFileBufferSize 2e9;
//- masterUncollated: non-blocking buffer size.
// If the file exceeds this buffer size scheduled transfer is used.
// Default: 2e9
maxMasterFileBufferSize 2e9;
}
When using the collated file handling, memory is allocated for the data in the
thread. maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated. If the data exceeds this size, the write does not use threading.
When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer. If the
data exceeds this size, the system uses scheduled communication.
The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters. Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.
A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated
An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling
The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
- the checking for point-connected multiple-regions now also writes the
conflicting points to a pointSet
- with the -writeSets option it now also reconstructs & writes pointSets
In parallel the sets are reconstructed. e.g.
mpirun -np 6 checkMesh -parallel -allGeometry -allTopology -writeSets vtk
will create a postProcessing/ folder with the vtk files of the
(reconstructed) faceSets and cellSets.
Also improved analysis of disconnected regions now also checks for point
connectivity with is useful for detecting if AMI regions have duplicate
points.
Patch contributed by Mattijs Janssens
