Added sets for sampling the cell-centres and face-centres of a cellSet
or faceSet. Example usage:
sets
(
c0
{
type cellSet;
set c0;
axis xyz;
}
f0
{
type faceSet;
set f0;
axis xyz;
}
);
Currently these deleted function declarations are still in the private section
of the class declarations but will be moved by hand to the public section over
time as this is too complex to automate reliably.
Sometimes the initial point and boundary intersection searches can
generate duplicate information which can lead to line-type sampled sets
having duplicated points. This change explicitly filters these
additional points out, so that the resulting set is optimal.
Resolves bug report https://bugs.openfoam.org/view.php?id=3161
This fix changes how the intersections loop ignores previously
intersected faces. It now marks them by their index so that subsequent
iterations ignore them.
Before this change, after an intersection was found the start point was
advanced by a small amount to move the past the intersection. The
problem with this was if multiple boundary faces or the end point were
in close proximity to the intersection then the move forward might span
them. This could lead to intersections being missed or counted multiple
times, in some cases indefinitely.
Based on a patch contributed by Mattijs Janssens
Resolves bug report https://bugs.openfoam.org/view.php?id=1147
The sampled sets have been renamed in a more explicit and consistent
manner, and two new ones have also been added. The available sets are as
follows:
arcUniform: Uniform samples along an arc. Replaces "circle", and
adds the ability to sample along only a part of the circle's
circumference. Example:
{
type arcUniform;
centre (0.95 0 0.25);
normal (1 0 0);
radial (0 0 0.25);
startAngle -1.57079633;
endAngle 0.52359878;
nPoints 200;
axis x;
}
boundaryPoints: Specified point samples associated with a subset of
the boundary. Replaces "patchCloud". Example:
{
type boundaryPoints;
patches (inlet1 inlet2);
points ((0 -0.05 0.05) (0 -0.05 0.1) (0 -0.05 0.15));
maxDistance 0.01;
axis x;
}
boundaryRandom: Random samples within a subset of the boundary.
Replaces "patchSeed", but changes the behaviour to be entirely
random. It does not seed the boundary face centres first. Example:
{
type boundaryRandom;
patches (inlet1 inlet2);
nPoints 1000;
axis x;
}
boxUniform: Uniform grid of samples within a axis-aligned box.
Replaces "array". Example:
{
type boxUniform;
box (0.95 0 0.25) (1.2 0.25 0.5);
nPoints (2 4 6);
axis x;
}
circleRandom: Random samples within a circle. New. Example:
{
type circleRandom;
centre (0.95 0 0.25);
normal (1 0 0);
radius 0.25;
nPoints 200;
axis x;
}
lineFace: Face-intersections along a line. Replaces "face". Example:
{
type lineFace;
start (0.6 0.6 0.5);
end (0.6 -0.3 -0.1);
axis x;
}
lineCell: Cell-samples along a line at the mid-points in-between
face-intersections. Replaces "midPoint". Example:
{
type lineCell;
start (0.5 0.6 0.5);
end (0.5 -0.3 -0.1);
axis x;
}
lineCellFace: Combination of "lineFace" and "lineCell". Replaces
"midPointAndFace". Example:
{
type lineCellFace;
start (0.55 0.6 0.5);
end (0.55 -0.3 -0.1);
axis x;
}
lineUniform: Uniform samples along a line. Replaces "uniform".
Example:
{
type lineUniform;
start (0.65 0.3 0.3);
end (0.65 -0.3 -0.1);
nPoints 200;
axis x;
}
points: Specified points. Replaces "cloud" when the ordered flag is
false, and "polyLine" when the ordered flag is true. Example:
{
type points;
points ((0 -0.05 0.05) (0 -0.05 0.1) (0 -0.05 0.15));
ordered yes;
axis x;
}
sphereRandom: Random samples within a sphere. New. Example:
{
type sphereRandom;
centre (0.95 0 0.25);
radius 0.25;
nPoints 200;
axis x;
}
triSurfaceMesh: Samples from all the points of a triSurfaceMesh.
Replaces "triSurfaceMeshPointSet". Example:
{
type triSurfaceMesh;
surface "surface.stl";
axis x;
}
The headers have also had documentation added. Example usage and a
description of the control parameters now exists for all sets.
In addition, a number of the algorithms which generate the sets have
been refactored or rewritten. This was done either to take advantage of
the recent changes to random number generation, or to remove ad-hoc
fixes that were made unnecessary by the barycentric tracking algorithm.
This is faster than the library functionality that it replaces, as it
allows the compiler to do inlining. It also does not utilise any static
state so generators do not interfere with each other. It is also faster
than the the array lookup in cachedRandom. The cachedRandom class
therefore offers no advantage over Random and has been removed.
Tree bound boxes are expanded asymmetrically to reduce the liklihood of
octree faces aliging with mesh faces and edges. The asymmetry is now
generated using hard-coded irrational numbers, rather than using a
random generator.
The asymmetry was effectively already hard coded. The random numbers are
only pseudo random, so the same numbers were being applied to the bound
boxes every time. This change simply removes the overhead of creating
the generator, and also gets rid of some duplicated code.
In early versions of OpenFOAM the scalar limits were simple macro replacements and the
names were capitalized to indicate this. The scalar limits are now static
constants which is a huge improvement on the use of macros and for consistency
the names have been changed to camel-case to indicate this and improve
readability of the code:
GREAT -> great
ROOTGREAT -> rootGreat
VGREAT -> vGreat
ROOTVGREAT -> rootVGreat
SMALL -> small
ROOTSMALL -> rootSmall
VSMALL -> vSmall
ROOTVSMALL -> rootVSmall
The original capitalized are still currently supported but their use is
deprecated.
Tracking data classes are no longer templated on the derived cloud type.
The advantage of this is that they can now be passed to sub models. This
should allow continuous phase data to be removed from the parcel
classes. The disadvantage is that every function which once took a
templated TrackData argument now needs an additional TrackCloudType
argument in order to perform the necessary down-casting.
Particle collisions with ACMI patches are now handled. The hit detects
whether the location is within the overlap or the coupled region and
recurses, calling the hit routine appropriate for the region.
The low level tracking methods are now more consistently named. There is
now a distinction between tracking to a face and hitting it. Function
object side effects have been moved out of the base layer and into the
parcels on which they are meaningful.
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor. Processor directories are named 'processorN',
where N is the processor number.
This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor. The files are stored in a single
directory named 'processors'.
The new format produces significantly fewer files - one per field, instead of N
per field. For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.
The file writing can be threaded allowing the simulation to continue running
while the data is being written to file. NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".
The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:
OptimisationSwitches
{
...
//- Parallel IO file handler
// uncollated (default), collated or masterUncollated
fileHandler uncollated;
//- collated: thread buffer size for queued file writes.
// If set to 0 or not sufficient for the file size threading is not used.
// Default: 2e9
maxThreadFileBufferSize 2e9;
//- masterUncollated: non-blocking buffer size.
// If the file exceeds this buffer size scheduled transfer is used.
// Default: 2e9
maxMasterFileBufferSize 2e9;
}
When using the collated file handling, memory is allocated for the data in the
thread. maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated. If the data exceeds this size, the write does not use threading.
When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer. If the
data exceeds this size, the system uses scheduled communication.
The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters. Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.
A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated
An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling
The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
terms of the local barycentric coordinates of the current tetrahedron,
rather than the global coordinate system.
Barycentric tracking works on any mesh, irrespective of mesh quality.
Particles do not get "lost", and tracking does not require ad-hoc
"corrections" or "rescues" to function robustly, because the calculation
of particle-face intersections is unambiguous and reproducible, even at
small angles of incidence.
Each particle position is defined by topology (i.e. the decomposed tet
cell it is in) and geometry (i.e. where it is in the cell). No search
operations are needed on restart or reconstruct, unlike when particle
positions are stored in the global coordinate system.
The particle positions file now contains particles' local coordinates
and topology, rather than the global coordinates and cell. This change
to the output format is not backwards compatible. Existing cases with
Lagrangian data will not restart, but they will still run from time
zero without any modification. This change was necessary in order to
guarantee that the loaded particle is valid, and therefore
fundamentally prevent "loss" and "search-failure" type bugs (e.g.,
2517, 2442, 2286, 1836, 1461, 1341, 1097).
The tracking functions have also been converted to function in terms
of displacement, rather than end position. This helps remove floating
point error issues, particularly towards the end of a tracking step.
Wall bounded streamlines have been removed. The implementation proved
incompatible with the new tracking algorithm. ParaView has a surface
LIC plugin which provides equivalent, or better, functionality.
Additionally, bug report <https://bugs.openfoam.org/view.php?id=2517>
is resolved by this change.
except turbulence and lagrangian which will also be updated shortly.
For example in the nonNewtonianIcoFoam offsetCylinder tutorial the viscosity
model coefficients may be specified in the corresponding "<type>Coeffs"
sub-dictionary:
transportModel CrossPowerLaw;
CrossPowerLawCoeffs
{
nu0 [0 2 -1 0 0 0 0] 0.01;
nuInf [0 2 -1 0 0 0 0] 10;
m [0 0 1 0 0 0 0] 0.4;
n [0 0 0 0 0 0 0] 3;
}
BirdCarreauCoeffs
{
nu0 [0 2 -1 0 0 0 0] 1e-06;
nuInf [0 2 -1 0 0 0 0] 1e-06;
k [0 0 1 0 0 0 0] 0;
n [0 0 0 0 0 0 0] 1;
}
which allows a quick change between models, or using the simpler
transportModel CrossPowerLaw;
nu0 [0 2 -1 0 0 0 0] 0.01;
nuInf [0 2 -1 0 0 0 0] 10;
m [0 0 1 0 0 0 0] 0.4;
n [0 0 0 0 0 0 0] 3;
if quick switching between models is not required.
To support this more convenient parameter specification the inconsistent
specification of seedSampleSet in the streamLine and wallBoundedStreamLine
functionObjects had to be corrected from
// Seeding method.
seedSampleSet uniform; //cloud; //triSurfaceMeshPointSet;
uniformCoeffs
{
type uniform;
axis x; //distance;
// Note: tracks slightly offset so as not to be on a face
start (-1.001 -0.05 0.0011);
end (-1.001 -0.05 1.0011);
nPoints 20;
}
to the simpler
// Seeding method.
seedSampleSet
{
type uniform;
axis x; //distance;
// Note: tracks slightly offset so as not to be on a face
start (-1.001 -0.05 0.0011);
end (-1.001 -0.05 1.0011);
nPoints 20;
}
which also support the "<type>Coeffs" form
// Seeding method.
seedSampleSet
{
type uniform;
uniformCoeffs
{
axis x; //distance;
// Note: tracks slightly offset so as not to be on a face
start (-1.001 -0.05 0.0011);
end (-1.001 -0.05 1.0011);
nPoints 20;
}
}
Replaced the 'postProcess' argument to the 'write' and 'execute'
functions with the single static member 'postProcess' in the
functionObject base-class.
- Avoids the need for the 'OutputFilterFunctionObject' wrapper
- Time-control for execution and writing is now provided by the
'timeControlFunctionObject' which instantiates the processing
'functionObject' and controls its operation.
- Alternative time-control functionObjects can now be written and
selected at run-time without the need to compile wrapped version of
EVERY existing functionObject which would have been required in the
old structure.
- The separation of 'execute' and 'write' functions is now formalized in the
'functionObject' base-class and all derived classes implement the
two functions.
- Unnecessary implementations of functions with appropriate defaults
in the 'functionObject' base-class have been removed reducing
clutter and simplifying implementation of new functionObjects.
- The 'coded' 'functionObject' has also been updated, simplified and tested.
- Further simplification is now possible by creating some general
intermediate classes derived from 'functionObject'.
to have the prefix 'write' rather than 'output'
So outputTime() -> writeTime()
but 'outputTime()' is still supported for backward-compatibility.
Also removed the redundant secondary-writing functionality from Time
which has been superseded by the 'writeRegisteredObject' functionObject.
for consistency with the time controls in controlDict and to avoid
unnecessary confusion. All code and tutorials have been updated.
The old names 'outputControl' and 'outputInterval' are but supported for
backward compatibility but deprecated.
Rather than requiring each functionObject to handle failed construction
internally (using the active_ flag) the static member function "viable"
is provided which returns true if construction of the functionObject is
likely to be successful. Failed construction is then handled by the
wrapper-class which constructs the functionObject,
e.g. "OutputFilterFunctionObject".
