This improves paraview's handling of VTK files which only contain
points. It means the points are visible without glyph-ing, and provides
the necessary input for some filters to operate correctly.
providing the shear-stress term in the momentum equation for incompressible and
compressible Newtonian, non-Newtonian and visco-elastic laminar flow as well as
Reynolds averaged and large-eddy simulation of turbulent flow.
The general deviatoric shear-stress term provided by the MomentumTransportModels
library is named divDevTau for compressible flow and divDevSigma (sigma =
tau/rho) for incompressible flow, the spherical part of the shear-stress is
assumed to be either included in the pressure or handled separately. The
corresponding stress function sigma is also provided which in the case of
Reynolds stress closure returns the effective Reynolds stress (including the
laminar contribution) or for other Reynolds averaged or large-eddy turbulence
closures returns the modelled Reynolds stress or sub-grid stress respectively.
For visco-elastic flow the sigma function returns the effective total stress
including the visco-elastic and Newtonian contributions.
For thermal flow the heat-flux generated by thermal diffusion is now handled by
the separate ThermophysicalTransportModels library allowing independent run-time
selection of the heat-flux model.
During the development of the MomentumTransportModels library significant effort
has been put into rationalising the components and supporting libraries,
removing redundant code, updating names to provide a more logical, consistent
and extensible interface and aid further development and maintenance. All
solvers and tutorials have been updated correspondingly and backward
compatibility of the input dictionaries provided.
Henry G. Weller
CFD Direct Ltd.
For many information and diagnostic messages the absolute path of the object is
not required and the local path relative to the current case is sufficient; the
new localObjectPath() member function of IOobject provides a convenient way of
printing this.
Currently these deleted function declarations are still in the private section
of the class declarations but will be moved by hand to the public section over
time as this is too complex to automate reliably.
for
db/functionObjects/timeControl/timeControl.H: timeControls
primitives/bools/Switch/Switch.H: class switchType
primitives/strings/fileName/fileName.H: fileType
primitives/strings/wordRe/wordRe.H: compOption
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor. Processor directories are named 'processorN',
where N is the processor number.
This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor. The files are stored in a single
directory named 'processors'.
The new format produces significantly fewer files - one per field, instead of N
per field. For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.
The file writing can be threaded allowing the simulation to continue running
while the data is being written to file. NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".
The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:
OptimisationSwitches
{
...
//- Parallel IO file handler
// uncollated (default), collated or masterUncollated
fileHandler uncollated;
//- collated: thread buffer size for queued file writes.
// If set to 0 or not sufficient for the file size threading is not used.
// Default: 2e9
maxThreadFileBufferSize 2e9;
//- masterUncollated: non-blocking buffer size.
// If the file exceeds this buffer size scheduled transfer is used.
// Default: 2e9
maxMasterFileBufferSize 2e9;
}
When using the collated file handling, memory is allocated for the data in the
thread. maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated. If the data exceeds this size, the write does not use threading.
When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer. If the
data exceeds this size, the system uses scheduled communication.
The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters. Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.
A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated
An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling
The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
- There will be triangles rendered inside the mesh (when
surface-rendering), because one of the cell's triangles is defined
as a quadrangle in VTK_WEDGE.
- Therefore, this VTK_WEDGE representation is only used when
decomposing the mesh, otherwise the correct representation is done
by VTK_POLYHEDRON.
- Furthermore, using VTK_PYRAMID gave worse result, because it renders
2 triangles inside the mesh for the collapsed quadrangle, likely due
to mismatch with the adjacent cell's face.
- Using VTK_HEXAHEDRON was not tested in this iteration, given that it
should give even worse results, when compared to using VTK_PYRAMID.
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2099
Replaced the 'postProcess' argument to the 'write' and 'execute'
functions with the single static member 'postProcess' in the
functionObject base-class.
Generally fields and objects are selected using the 'field[s]' and
'object[s]' keywords but this was not consistent between all
functionObject, fvOptions etc. and now fixed by applying the following
renaming:
fieldName -> field
fieldNames -> fields
objectName -> object
objectNames -> objects
the equivalent functionality is provided by the writeRegisteredObject
functionObject in a MUCH simpler, easier and extensible manner.
functionObject: Removed the now redundant 'timeSet' function.
This changes simplifies the specification of functionObjects in
controlDict and is consistent with the 'libs' option in controlDict to
load special solver libraries.
Support for the old 'functionObjectLibs' name is supported for backward compatibility.
- Avoids the need for the 'OutputFilterFunctionObject' wrapper
- Time-control for execution and writing is now provided by the
'timeControlFunctionObject' which instantiates the processing
'functionObject' and controls its operation.
- Alternative time-control functionObjects can now be written and
selected at run-time without the need to compile wrapped version of
EVERY existing functionObject which would have been required in the
old structure.
- The separation of 'execute' and 'write' functions is now formalized in the
'functionObject' base-class and all derived classes implement the
two functions.
- Unnecessary implementations of functions with appropriate defaults
in the 'functionObject' base-class have been removed reducing
clutter and simplifying implementation of new functionObjects.
- The 'coded' 'functionObject' has also been updated, simplified and tested.
- Further simplification is now possible by creating some general
intermediate classes derived from 'functionObject'.
splitMeshRegions: handle flipping of faces for surface fields
subsetMesh: subset dimensionedFields
decomposePar: use run-time selection of decomposition constraints. Used to
keep cells on particular processors. See the decomposeParDict in
$FOAM_UTILITIES/parallel/decomposePar:
- preserveBaffles: keep baffle faces on same processor
- preserveFaceZones: keep faceZones owner and neighbour on same processor
- preservePatches: keep owner and neighbour on same processor. Note: not
suitable for cyclicAMI since these are not coupled on the patch level
- singleProcessorFaceSets: keep complete faceSet on a single processor
- refinementHistory: keep cells originating from a single cell on the
same processor.
decomposePar: clean up decomposition of refinement data from snappyHexMesh
reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)
reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)
redistributePar:
- corrected mapping surfaceFields
- adding processor patches in order consistent with decomposePar
argList: check that slaves are running same version as master
fvMeshSubset: move to dynamicMesh library
fvMeshDistribute:
- support for mapping dimensionedFields
- corrected mapping of surfaceFields
parallel routines: allow parallel running on single processor
Field: support for
- distributed mapping
- mapping with flipping
mapDistribute: support for flipping
AMIInterpolation: avoid constructing localPoints
